Generated Code
The following is c code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
/*
There are a total of 16 entries in the algebraic variable array.
There are a total of 8 entries in each of the rate and state variable arrays.
There are a total of 37 entries in the constant variable array.
*/
/*
* VOI is Time in component Environmental (second).
* CONSTANTS[0] is S in component Parameters (hertz).
* CONSTANTS[1] is Zeta in component Parameters (dimensionless).
* CONSTANTS[2] is R0 in component Parameters (mm).
* CONSTANTS[3] is Cwall in component Parameters (mm_per_mmHg).
* CONSTANTS[4] is Kne in component Parameters (mmHg_per_mm).
* CONSTANTS[5] is K1 in component Parameters (mmHg_per_mm).
* CONSTANTS[6] is K2 in component Parameters (mmHg_per_mm).
* CONSTANTS[7] is K3 in component Parameters (mmHg_per_mm).
* CONSTANTS[8] is Bwall in component Parameters (mmHg_s_per_sq_mm).
* CONSTANTS[9] is B1 in component Parameters (mmHg_s_per_mm).
* CONSTANTS[10] is B2 in component Parameters (mmHg_s_per_mm).
* CONSTANTS[11] is B3 in component Parameters (mmHg_s_per_mm).
* CONSTANTS[12] is Tsmax in component Parameters (AU).
* CONSTANTS[13] is Tpmax in component Parameters (AU).
* CONSTANTS[14] is Tsmin in component Parameters (AU).
* CONSTANTS[15] is Tpmin in component Parameters (AU).
* CONSTANTS[16] is Gcns in component Parameters (dimensionless).
* CONSTANTS[17] is Gs in component Parameters (per_Hertz).
* CONSTANTS[18] is Gp in component Parameters (per_Hertz).
* CONSTANTS[19] is tau_nor in component Parameters (second).
* CONSTANTS[20] is tau_ach in component Parameters (second).
* CONSTANTS[21] is tau_HR_nor in component Parameters (second).
* CONSTANTS[22] is tau_HR_ach in component Parameters (second).
* CONSTANTS[23] is HRo in component Parameters (Beats_per_min).
* CONSTANTS[24] is HRmax in component Parameters (Beats_per_min).
* CONSTANTS[25] is HRmin in component Parameters (Beats_per_min).
* CONSTANTS[26] is Beta in component Parameters (dimensionless).
* CONSTANTS[27] is delta_th in component Parameters (dimensionless).
* CONSTANTS[28] is q_nor in component Parameters (per_s).
* CONSTANTS[29] is q_ach in component Parameters (per_s).
* CONSTANTS[30] is K_nor in component Parameters (AU).
* CONSTANTS[31] is K_ach in component Parameters (AU).
* CONSTANTS[32] is Gamma in component Parameters (dimensionless).
* ALGEBRAIC[10] is alpha_cns in component Nervous_System (hertz).
* ALGEBRAIC[8] is n in component Nervous_System (hertz).
* ALGEBRAIC[6] is Delta in component Coupling_Dynamics (dimensionless).
* CONSTANTS[33] is alpha_s0 in component Nervous_System (hertz).
* CONSTANTS[34] is alpha_p0 in component Nervous_System (hertz).
* STATES[0] is A in component Aortic_Wall (mm_sq).
* ALGEBRAIC[0] is P in component Aortic_Wall (mmHg).
* ALGEBRAIC[1] is R in component Aortic_Wall (mm).
* STATES[1] is Eps_1 in component Coupling_Dynamics (dimensionless).
* STATES[2] is Eps_2 in component Coupling_Dynamics (dimensionless).
* STATES[3] is Eps_3 in component Coupling_Dynamics (dimensionless).
* ALGEBRAIC[4] is Eps_wall in component Coupling_Dynamics (dimensionless).
* ALGEBRAIC[12] is Ts in component PNS_tones (AU).
* ALGEBRAIC[13] is Tp in component PNS_tones (AU).
* STATES[4] is c_nor in component Norepinephrine (AU).
* STATES[5] is C_ach in component Acetylcholine (AU).
* ALGEBRAIC[2] is delta_HR_ss in component Heart_Response_Nor (Beats_per_min).
* CONSTANTS[35] is delta_HR_smax in component Heart_Response_Nor (Beats_per_min).
* STATES[6] is delta_HR_s in component Heart_Response_Nor (Beats_per_min).
* ALGEBRAIC[3] is delta_HR_ps in component HR_ach (Beats_per_min).
* CONSTANTS[36] is delta_HR_pmax in component HR_ach (Beats_per_min).
* ALGEBRAIC[5] is delta_HR_pfast in component HR_ach (Beats_per_min).
* STATES[7] is delta_HR_pslow in component HR_ach (Beats_per_min).
* ALGEBRAIC[7] is delta_HR_p in component HR_ach (Beats_per_min).
* ALGEBRAIC[14] is HR in component HR_Combined (Beats_per_min).
* ALGEBRAIC[11] is HR_p in component HR_Combined (Beats_per_min).
* ALGEBRAIC[9] is HR_s in component HR_Combined (Beats_per_min).
* ALGEBRAIC[15] is Period in component HR_Combined (Sec_per_Beat).
* RATES[0] is d/dt A in component Aortic_Wall (mm_sq).
* RATES[1] is d/dt Eps_1 in component Coupling_Dynamics (dimensionless).
* RATES[2] is d/dt Eps_2 in component Coupling_Dynamics (dimensionless).
* RATES[3] is d/dt Eps_3 in component Coupling_Dynamics (dimensionless).
* RATES[4] is d/dt c_nor in component Norepinephrine (AU).
* RATES[5] is d/dt C_ach in component Acetylcholine (AU).
* RATES[6] is d/dt delta_HR_s in component Heart_Response_Nor (Beats_per_min).
* RATES[7] is d/dt delta_HR_pslow in component HR_ach (Beats_per_min).
*/
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
CONSTANTS[0] = 480;
CONSTANTS[1] = 1;
CONSTANTS[2] = 1.6;
CONSTANTS[3] = 0.006;
CONSTANTS[4] = 1;
CONSTANTS[5] = 1.5;
CONSTANTS[6] = 3.75;
CONSTANTS[7] = 1.05;
CONSTANTS[8] = 1;
CONSTANTS[9] = 1;
CONSTANTS[10] = 10;
CONSTANTS[11] = 206.973;
CONSTANTS[12] = 4.12;
CONSTANTS[13] = 4.994;
CONSTANTS[14] = 0.5;
CONSTANTS[15] = 1.6;
CONSTANTS[16] = 1;
CONSTANTS[17] = 0.178;
CONSTANTS[18] = 0.492;
CONSTANTS[19] = 9.1;
CONSTANTS[20] = 0.2;
CONSTANTS[21] = 2.1;
CONSTANTS[22] = 2.5;
CONSTANTS[23] = 282.648;
CONSTANTS[24] = 483.218;
CONSTANTS[25] = 226.238;
CONSTANTS[26] = 0.175;
CONSTANTS[27] = 0;
CONSTANTS[28] = 0.1099;
CONSTANTS[29] = 5;
CONSTANTS[30] = 1.12;
CONSTANTS[31] = 0.65;
CONSTANTS[32] = 0.75;
CONSTANTS[33] = 58.6;
CONSTANTS[34] = 76.019;
STATES[0] = 15.20531;
STATES[1] = 0.2042;
STATES[2] = 0.183;
STATES[3] = 0.161;
STATES[4] = 1.441;
STATES[5] = 1.0;
STATES[6] = 0;
STATES[7] = 0;
CONSTANTS[35] = CONSTANTS[24] - CONSTANTS[23];
CONSTANTS[36] = CONSTANTS[23] - CONSTANTS[25];
}
void
computeRates(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] = 100.000+ 10.0000* sin( 5.00000*VOI);
RATES[0] = (- ( pow((STATES[0]/ 3.14159265358979), 1.0 / 2) - CONSTANTS[2])/CONSTANTS[3]+ALGEBRAIC[0])/CONSTANTS[8];
ALGEBRAIC[2] = ( CONSTANTS[35]*pow(STATES[4], 2.00000))/(pow(CONSTANTS[30], 2.00000)+pow(STATES[4], 2.00000));
RATES[6] = (- STATES[6]+ALGEBRAIC[2])/CONSTANTS[21];
ALGEBRAIC[3] = ( CONSTANTS[36]*pow(STATES[5], 2.00000))/(pow(CONSTANTS[31], 2.00000)+pow(STATES[5], 2.00000));
RATES[7] = (- STATES[7]+ (1.00000 - CONSTANTS[32])*ALGEBRAIC[3])/CONSTANTS[22];
ALGEBRAIC[1] = pow(STATES[0]/ 3.14159265358979, 0.500000);
ALGEBRAIC[4] = (ALGEBRAIC[1] - CONSTANTS[2])/CONSTANTS[2];
rootfind_0(VOI, CONSTANTS, RATES, STATES, ALGEBRAIC, pret);
ALGEBRAIC[6] = ALGEBRAIC[4] - STATES[1];
ALGEBRAIC[8] = CONSTANTS[0]*(ALGEBRAIC[6] - CONSTANTS[1]*CONSTANTS[27]);
ALGEBRAIC[10] = CONSTANTS[16]*ALGEBRAIC[8];
ALGEBRAIC[12] = CONSTANTS[14]+(CONSTANTS[12] - CONSTANTS[14])/(exp( CONSTANTS[17]*(ALGEBRAIC[10] - CONSTANTS[33]))+1.00000);
RATES[4] = - (STATES[4]/CONSTANTS[19])+ CONSTANTS[28]*ALGEBRAIC[12];
ALGEBRAIC[13] = CONSTANTS[15]+(CONSTANTS[13] - CONSTANTS[15])/(exp( - CONSTANTS[18]*(ALGEBRAIC[10] - CONSTANTS[34]))+1.00000);
RATES[5] = - (STATES[5]/CONSTANTS[20])+ CONSTANTS[29]*ALGEBRAIC[13];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] = 100.000+ 10.0000* sin( 5.00000*VOI);
ALGEBRAIC[2] = ( CONSTANTS[35]*pow(STATES[4], 2.00000))/(pow(CONSTANTS[30], 2.00000)+pow(STATES[4], 2.00000));
ALGEBRAIC[3] = ( CONSTANTS[36]*pow(STATES[5], 2.00000))/(pow(CONSTANTS[31], 2.00000)+pow(STATES[5], 2.00000));
ALGEBRAIC[1] = pow(STATES[0]/ 3.14159265358979, 0.500000);
ALGEBRAIC[4] = (ALGEBRAIC[1] - CONSTANTS[2])/CONSTANTS[2];
ALGEBRAIC[6] = ALGEBRAIC[4] - STATES[1];
ALGEBRAIC[8] = CONSTANTS[0]*(ALGEBRAIC[6] - CONSTANTS[1]*CONSTANTS[27]);
ALGEBRAIC[10] = CONSTANTS[16]*ALGEBRAIC[8];
ALGEBRAIC[12] = CONSTANTS[14]+(CONSTANTS[12] - CONSTANTS[14])/(exp( CONSTANTS[17]*(ALGEBRAIC[10] - CONSTANTS[33]))+1.00000);
ALGEBRAIC[13] = CONSTANTS[15]+(CONSTANTS[13] - CONSTANTS[15])/(exp( - CONSTANTS[18]*(ALGEBRAIC[10] - CONSTANTS[34]))+1.00000);
ALGEBRAIC[5] = CONSTANTS[32]*ALGEBRAIC[3];
ALGEBRAIC[7] = ALGEBRAIC[5]+STATES[7];
ALGEBRAIC[9] = CONSTANTS[23]+STATES[6];
ALGEBRAIC[11] = CONSTANTS[23] - ALGEBRAIC[7];
ALGEBRAIC[14] = ALGEBRAIC[11]+( (ALGEBRAIC[9] - CONSTANTS[23])*(ALGEBRAIC[11] - CONSTANTS[26]*CONSTANTS[25]))/(CONSTANTS[23] - CONSTANTS[26]*CONSTANTS[25]);
ALGEBRAIC[15] = 60.0000/ALGEBRAIC[14];
}
void objfunc_0(double *p, double *hx, int m, int n, void *adata)
{
struct rootfind_info* rfi = (struct rootfind_info*)adata;
#define VOI rfi->aVOI
#define CONSTANTS rfi->aCONSTANTS
#define RATES rfi->aRATES
#define STATES rfi->aSTATES
#define ALGEBRAIC rfi->aALGEBRAIC
#define pret rfi->aPRET
RATES[1] = p[0];
RATES[2] = p[1];
RATES[3] = p[2];
hx[0] = RATES[1] - (( CONSTANTS[4]*(ALGEBRAIC[4] - STATES[1]) - CONSTANTS[5]*(STATES[1] - STATES[2]))/CONSTANTS[9]+RATES[2]);
hx[1] = RATES[2] - (( CONSTANTS[5]*(STATES[1] - STATES[2]) - CONSTANTS[6]*(STATES[2] - STATES[3]))+ CONSTANTS[9]*RATES[1]+ CONSTANTS[10]*RATES[3])/(CONSTANTS[9]+CONSTANTS[10]);
hx[2] = RATES[3] - (( CONSTANTS[6]*(STATES[2] - STATES[3]) - CONSTANTS[7]*STATES[3])+ CONSTANTS[10]*RATES[2])/(CONSTANTS[10]+CONSTANTS[11]);
#undef VOI
#undef CONSTANTS
#undef RATES
#undef STATES
#undef ALGEBRAIC
#undef pret
}
void rootfind_0(double VOI, double* CONSTANTS, double* RATES,
double* STATES, double* ALGEBRAIC, int* pret)
{
static double p[3] = {0.1,0.1,0.1};
double bp[3], work[LM_DIF_WORKSZ(3, 3)];
struct rootfind_info rfi;
rfi.aVOI = VOI;
rfi.aCONSTANTS = CONSTANTS;
rfi.aRATES = RATES;
rfi.aSTATES = STATES;
rfi.aALGEBRAIC = ALGEBRAIC;
rfi.aPRET = pret;
do_levmar(objfunc_0, p, bp, work, pret, 3, &rfi);
RATES[1] = p[0];
RATES[2] = p[1];
RATES[3] = p[2];
}
