Generated Code
The following is c_ida code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
/*
There are a total of 0 entries in the algebraic variable array.
There are a total of 9 entries in each of the rate and state variable arrays.
There are a total of 40 entries in the constant variable array.
*/
/*
* VOI is time in component environment (hour).
* STATES[0] is pRB in component pRB (CONC).
* CONSTANTS[0] is k1 in component model_parameters (dimensionless).
* STATES[1] is E2F1 in component E2F1 (CONC).
* CONSTANTS[1] is km1 in component model_parameters (dimensionless).
* CONSTANTS[2] is j11 in component model_parameters (dimensionless).
* CONSTANTS[3] is j61 in component model_parameters (dimensionless).
* CONSTANTS[4] is k16 in component model_parameters (dimensionless).
* STATES[2] is CycDa in component CycDa (CONC).
* CONSTANTS[5] is k61 in component model_parameters (dimensionless).
* STATES[3] is pRBp in component pRBp (CONC).
* CONSTANTS[6] is phi_pRB in component model_parameters (dimensionless).
* CONSTANTS[7] is kp in component model_parameters (dimensionless).
* CONSTANTS[8] is k2 in component model_parameters (dimensionless).
* CONSTANTS[9] is a in component model_parameters (dimensionless).
* CONSTANTS[10] is km2 in component model_parameters (dimensionless).
* CONSTANTS[11] is j12 in component model_parameters (dimensionless).
* CONSTANTS[12] is j62 in component model_parameters (dimensionless).
* CONSTANTS[13] is phi_E2F1 in component model_parameters (dimensionless).
* CONSTANTS[14] is k34 in component model_parameters (dimensionless).
* STATES[4] is CycDi in component CycDi (CONC).
* CONSTANTS[15] is km4 in component model_parameters (dimensionless).
* CONSTANTS[16] is k43 in component model_parameters (dimensionless).
* CONSTANTS[17] is phi_CycDa in component model_parameters (dimensionless).
* CONSTANTS[18] is k3 in component model_parameters (dimensionless).
* STATES[5] is AP1 in component AP1 (CONC).
* CONSTANTS[19] is k23 in component model_parameters (dimensionless).
* CONSTANTS[20] is j13 in component model_parameters (dimensionless).
* CONSTANTS[21] is j63 in component model_parameters (dimensionless).
* CONSTANTS[22] is phi_CycDi in component model_parameters (dimensionless).
* CONSTANTS[23] is Fm in component model_parameters (dimensionless).
* CONSTANTS[24] is k25 in component model_parameters (dimensionless).
* CONSTANTS[25] is j15 in component model_parameters (dimensionless).
* CONSTANTS[26] is j65 in component model_parameters (dimensionless).
* CONSTANTS[27] is phi_AP1 in component model_parameters (dimensionless).
* CONSTANTS[28] is k67 in component model_parameters (dimensionless).
* STATES[6] is CycEa in component CycEa (CONC).
* CONSTANTS[29] is k76 in component model_parameters (dimensionless).
* STATES[7] is pRBpp in component pRBpp (CONC).
* CONSTANTS[30] is phi_pRBp in component model_parameters (dimensionless).
* CONSTANTS[31] is phi_pRBpp in component model_parameters (dimensionless).
* STATES[8] is CycEi in component CycEi (CONC).
* CONSTANTS[32] is k28 in component model_parameters (dimensionless).
* CONSTANTS[33] is j18 in component model_parameters (dimensionless).
* CONSTANTS[34] is j68 in component model_parameters (dimensionless).
* CONSTANTS[35] is k98 in component model_parameters (dimensionless).
* CONSTANTS[36] is k89 in component model_parameters (dimensionless).
* CONSTANTS[37] is km9 in component model_parameters (dimensionless).
* CONSTANTS[38] is phi_CycEi in component model_parameters (dimensionless).
* CONSTANTS[39] is phi_CycEa in component model_parameters (dimensionless).
* RATES[0] is d/dt pRB in component pRB (CONC).
* RATES[1] is d/dt E2F1 in component E2F1 (CONC).
* RATES[2] is d/dt CycDa in component CycDa (CONC).
* RATES[4] is d/dt CycDi in component CycDi (CONC).
* RATES[5] is d/dt AP1 in component AP1 (CONC).
* RATES[3] is d/dt pRBp in component pRBp (CONC).
* RATES[7] is d/dt pRBpp in component pRBpp (CONC).
* RATES[8] is d/dt CycEi in component CycEi (CONC).
* RATES[6] is d/dt CycEa in component CycEa (CONC).
* There are a total of 0 condition variables.
*/
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 0;
CONSTANTS[0] = 1;
STATES[1] = 0;
CONSTANTS[1] = 0.5;
CONSTANTS[2] = 0.5;
CONSTANTS[3] = 5;
CONSTANTS[4] = 0.4;
STATES[2] = 0;
CONSTANTS[5] = 0.3;
STATES[3] = 0;
CONSTANTS[6] = 0.005;
CONSTANTS[7] = 0.05;
CONSTANTS[8] = 1.6;
CONSTANTS[9] = 0.04;
CONSTANTS[10] = 4;
CONSTANTS[11] = 5;
CONSTANTS[12] = 8;
CONSTANTS[13] = 0.1;
CONSTANTS[14] = 0.04;
STATES[4] = 0;
CONSTANTS[15] = 0.3;
CONSTANTS[16] = 0.01;
CONSTANTS[17] = 0.03;
CONSTANTS[18] = 0.05;
STATES[5] = 0;
CONSTANTS[19] = 0.3;
CONSTANTS[20] = 0.002;
CONSTANTS[21] = 2;
CONSTANTS[22] = 0.023;
CONSTANTS[23] = 0;
CONSTANTS[24] = 0.9;
CONSTANTS[25] = 0.001;
CONSTANTS[26] = 6;
CONSTANTS[27] = 0.01;
CONSTANTS[28] = 0.7;
STATES[6] = 0;
CONSTANTS[29] = 0.1;
STATES[7] = 0;
CONSTANTS[30] = 0.06;
CONSTANTS[31] = 0.04;
STATES[8] = 0;
CONSTANTS[32] = 0.06;
CONSTANTS[33] = 0.6;
CONSTANTS[34] = 7;
CONSTANTS[35] = 0.01;
CONSTANTS[36] = 0.07;
CONSTANTS[37] = 0.005;
CONSTANTS[38] = 0.06;
CONSTANTS[39] = 0.05;
RATES[0] = 0.1001;
RATES[1] = 0.1001;
RATES[2] = 0.1001;
RATES[4] = 0.1001;
RATES[5] = 0.1001;
RATES[3] = 0.1001;
RATES[7] = 0.1001;
RATES[8] = 0.1001;
RATES[6] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - (( CONSTANTS[0]*(STATES[1]/(CONSTANTS[1]+STATES[1]))*(CONSTANTS[2]/( CONSTANTS[2]*STATES[0]))*(CONSTANTS[3]/( CONSTANTS[3]*STATES[3])) - CONSTANTS[4]*STATES[0]*STATES[2])+ CONSTANTS[5]*STATES[3]) - CONSTANTS[6]*STATES[0];
resid[1] = RATES[1] - (CONSTANTS[7]+ CONSTANTS[8]*((pow(CONSTANTS[9], 2.00000)+pow(STATES[1], 2.00000))/(pow(CONSTANTS[10], 2.00000)+pow(STATES[1], 2.00000)))*(CONSTANTS[11]/(CONSTANTS[11]+STATES[3]))*(CONSTANTS[12]/(CONSTANTS[12]+STATES[3]))) - CONSTANTS[13]*STATES[1];
resid[2] = RATES[2] - (( CONSTANTS[14]*STATES[4]*STATES[2])/(CONSTANTS[15]+STATES[2]) - CONSTANTS[14]*STATES[2]) - CONSTANTS[17]*STATES[2];
resid[3] = RATES[4] - (( CONSTANTS[18]*STATES[5]+ CONSTANTS[19]*STATES[1]*(CONSTANTS[20]/(CONSTANTS[20]+STATES[0]))*(CONSTANTS[21]/(CONSTANTS[21]+STATES[3]))+ CONSTANTS[16]*STATES[2]) - CONSTANTS[14]*STATES[4]*(STATES[2]/(CONSTANTS[15]+STATES[2]))) - CONSTANTS[22]*STATES[4];
resid[4] = RATES[5] - (CONSTANTS[23]+ CONSTANTS[24]*STATES[1]*(CONSTANTS[25]/(CONSTANTS[25]+STATES[0]))*(CONSTANTS[26]/(CONSTANTS[26]+STATES[3]))) - CONSTANTS[27]*STATES[5];
resid[5] = RATES[3] - ((( CONSTANTS[4]*STATES[0]*STATES[2] - CONSTANTS[5]*STATES[3]) - CONSTANTS[28]*STATES[3]*STATES[6])+ CONSTANTS[29]*STATES[7]) - CONSTANTS[30]*STATES[3];
resid[6] = RATES[7] - ( CONSTANTS[28]*STATES[3]*STATES[6] - CONSTANTS[29]*STATES[7]) - CONSTANTS[31]*STATES[7];
resid[7] = RATES[8] - (( CONSTANTS[32]*STATES[1]*(CONSTANTS[33]/(CONSTANTS[33]+STATES[0]))*(CONSTANTS[34]/(CONSTANTS[34]+STATES[3]))+ CONSTANTS[35]*STATES[6]) - CONSTANTS[36]*STATES[8]*(STATES[6]/(CONSTANTS[37]+STATES[6]))) - CONSTANTS[38]*STATES[8];
resid[8] = RATES[6] - ( CONSTANTS[36]*STATES[8]*(STATES[6]/(CONSTANTS[37]+STATES[6])) - CONSTANTS[35]*STATES[6]) - CONSTANTS[39]*STATES[6];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
SI[6] = 1.0;
SI[7] = 1.0;
SI[8] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}