/*
   There are a total of 13 entries in the algebraic variable array.
   There are a total of 9 entries in each of the rate and state variable arrays.
   There are a total of 16 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (second).
 * STATES[0] is q_S_i in component environment (fmol).
 * STATES[1] is q_S_o in component environment (fmol).
 * STATES[2] is q_E_ADP in component environment (fmol).
 * STATES[3] is q_E_ATP in component environment (fmol).
 * STATES[4] is q_ATP in component environment (fmol).
 * STATES[5] is q_ADP in component environment (fmol).
 * STATES[6] is q_Pi in component environment (fmol).
 * STATES[7] is q_S_E_ATP in component environment (fmol).
 * STATES[8] is q_S_E_ADP in component environment (fmol).
 * ALGEBRAIC[9] is v_ReABind in component ABC (fmol_per_sec).
 * ALGEBRAIC[10] is v_ReSBind in component ABC (fmol_per_sec).
 * ALGEBRAIC[11] is v_ReHyd in component ABC (fmol_per_sec).
 * ALGEBRAIC[12] is v_ReRel in component ABC (fmol_per_sec).
 * CONSTANTS[0] is kappa_ReABind in component ABC_parameters (fmol_per_sec).
 * CONSTANTS[1] is kappa_ReSBind in component ABC_parameters (fmol_per_sec).
 * CONSTANTS[2] is kappa_ReHyd in component ABC_parameters (fmol_per_sec).
 * CONSTANTS[3] is kappa_ReRel in component ABC_parameters (fmol_per_sec).
 * CONSTANTS[4] is K_S_i in component ABC_parameters (per_fmol).
 * CONSTANTS[5] is K_S_o in component ABC_parameters (per_fmol).
 * CONSTANTS[6] is K_E_ADP in component ABC_parameters (per_fmol).
 * CONSTANTS[7] is K_E_ATP in component ABC_parameters (per_fmol).
 * CONSTANTS[8] is K_ATP in component ABC_parameters (per_fmol).
 * CONSTANTS[9] is K_ADP in component ABC_parameters (per_fmol).
 * CONSTANTS[10] is K_Pi in component ABC_parameters (per_fmol).
 * CONSTANTS[11] is K_S_E_ATP in component ABC_parameters (per_fmol).
 * CONSTANTS[12] is K_S_E_ADP in component ABC_parameters (per_fmol).
 * CONSTANTS[13] is R in component constants (J_per_K_per_mol).
 * CONSTANTS[14] is T in component constants (kelvin).
 * ALGEBRAIC[0] is mu_S_i in component ABC (J_per_mol).
 * ALGEBRAIC[1] is mu_S_o in component ABC (J_per_mol).
 * ALGEBRAIC[2] is mu_E_ADP in component ABC (J_per_mol).
 * ALGEBRAIC[3] is mu_E_ATP in component ABC (J_per_mol).
 * ALGEBRAIC[4] is mu_ATP in component ABC (J_per_mol).
 * ALGEBRAIC[5] is mu_ADP in component ABC (J_per_mol).
 * ALGEBRAIC[6] is mu_Pi in component ABC (J_per_mol).
 * ALGEBRAIC[7] is mu_S_E_ATP in component ABC (J_per_mol).
 * ALGEBRAIC[8] is mu_S_E_ADP in component ABC (J_per_mol).
 * CONSTANTS[15] is F in component constants (C_per_mol).
 * RATES[0] is d/dt q_S_i in component environment (fmol).
 * RATES[1] is d/dt q_S_o in component environment (fmol).
 * RATES[2] is d/dt q_E_ADP in component environment (fmol).
 * RATES[3] is d/dt q_E_ATP in component environment (fmol).
 * RATES[4] is d/dt q_ATP in component environment (fmol).
 * RATES[5] is d/dt q_ADP in component environment (fmol).
 * RATES[6] is d/dt q_Pi in component environment (fmol).
 * RATES[7] is d/dt q_S_E_ATP in component environment (fmol).
 * RATES[8] is d/dt q_S_E_ADP in component environment (fmol).
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 1e-6;
STATES[1] = 1e-3;
STATES[2] = 1e-6;
STATES[3] = 1e-6;
STATES[4] = 1e-4;
STATES[5] = 1e-6;
STATES[6] = 1e-6;
STATES[7] = 1e-6;
STATES[8] = 1e-6;
CONSTANTS[0] = 0.509703;
CONSTANTS[1] = 1.85478e-07;
CONSTANTS[2] = 185478;
CONSTANTS[3] = 48186.7;
CONSTANTS[4] = 1.58747e-11;
CONSTANTS[5] = 6.46339e+08;
CONSTANTS[6] = 0.000905319;
CONSTANTS[7] = 5.7767;
CONSTANTS[8] = 1.50077e+06;
CONSTANTS[9] = 2.35199e-10;
CONSTANTS[10] = 6.83676e-15;
CONSTANTS[11] = 0.141881;
CONSTANTS[12] = 0.546122;
CONSTANTS[13] = 8.31;
CONSTANTS[14] = 310;
CONSTANTS[15] = 96485;
}
void
computeRates(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[2] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[6]*STATES[2]);
ALGEBRAIC[3] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[7]*STATES[3]);
ALGEBRAIC[4] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[8]*STATES[4]);
ALGEBRAIC[5] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[9]*STATES[5]);
ALGEBRAIC[9] =  CONSTANTS[0]*(exp((ALGEBRAIC[2]+ALGEBRAIC[4])/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[3]+ALGEBRAIC[5])/( CONSTANTS[13]*CONSTANTS[14])));
RATES[4] = - ALGEBRAIC[9];
RATES[5] = ALGEBRAIC[9];
ALGEBRAIC[1] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[5]*STATES[1]);
ALGEBRAIC[7] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[11]*STATES[7]);
ALGEBRAIC[10] =  CONSTANTS[1]*(exp((ALGEBRAIC[1]+ALGEBRAIC[3])/( CONSTANTS[13]*CONSTANTS[14])) - exp(ALGEBRAIC[7]/( CONSTANTS[13]*CONSTANTS[14])));
RATES[1] = - ALGEBRAIC[10];
RATES[3] = ALGEBRAIC[9] - ALGEBRAIC[10];
ALGEBRAIC[6] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[10]*STATES[6]);
ALGEBRAIC[8] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[12]*STATES[8]);
ALGEBRAIC[11] =  CONSTANTS[2]*(exp(ALGEBRAIC[7]/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[8]+ALGEBRAIC[6])/( CONSTANTS[13]*CONSTANTS[14])));
RATES[0] = ALGEBRAIC[11];
RATES[6] = ALGEBRAIC[11];
RATES[7] = ALGEBRAIC[10] - ALGEBRAIC[11];
ALGEBRAIC[0] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[4]*STATES[0]);
ALGEBRAIC[12] =  CONSTANTS[3]*(exp(ALGEBRAIC[8]/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[0]+ALGEBRAIC[2])/( CONSTANTS[13]*CONSTANTS[14])));
RATES[2] = - ALGEBRAIC[10]+ALGEBRAIC[12];
RATES[8] = ALGEBRAIC[11] - ALGEBRAIC[12];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[2] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[6]*STATES[2]);
ALGEBRAIC[3] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[7]*STATES[3]);
ALGEBRAIC[4] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[8]*STATES[4]);
ALGEBRAIC[5] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[9]*STATES[5]);
ALGEBRAIC[9] =  CONSTANTS[0]*(exp((ALGEBRAIC[2]+ALGEBRAIC[4])/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[3]+ALGEBRAIC[5])/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[1] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[5]*STATES[1]);
ALGEBRAIC[7] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[11]*STATES[7]);
ALGEBRAIC[10] =  CONSTANTS[1]*(exp((ALGEBRAIC[1]+ALGEBRAIC[3])/( CONSTANTS[13]*CONSTANTS[14])) - exp(ALGEBRAIC[7]/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[6] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[10]*STATES[6]);
ALGEBRAIC[8] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[12]*STATES[8]);
ALGEBRAIC[11] =  CONSTANTS[2]*(exp(ALGEBRAIC[7]/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[8]+ALGEBRAIC[6])/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[0] =  CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[4]*STATES[0]);
ALGEBRAIC[12] =  CONSTANTS[3]*(exp(ALGEBRAIC[8]/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[0]+ALGEBRAIC[2])/( CONSTANTS[13]*CONSTANTS[14])));
}