Generated Code
The following is c code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
/*
There are a total of 49 entries in the algebraic variable array.
There are a total of 7 entries in each of the rate and state variable arrays.
There are a total of 60 entries in the constant variable array.
*/
/*
* VOI is t in component params_BG (second).
* CONSTANTS[0] is R in component params_BG (J_per_K_mol).
* CONSTANTS[1] is T in component params_BG (kelvin).
* CONSTANTS[2] is F in component params_BG (C_per_mol).
* CONSTANTS[3] is K_Hi in component params_BG (per_fmol).
* CONSTANTS[55] is q_Hi in component params_BG (fmol).
* CONSTANTS[4] is K_Ho in component params_BG (per_fmol).
* CONSTANTS[57] is q_Ho in component params_BG (fmol).
* CONSTANTS[5] is K_Cai in component params_BG (per_fmol).
* CONSTANTS[45] is q_Cai in component params_BG (fmol).
* CONSTANTS[6] is K_Cao in component params_BG (per_fmol).
* CONSTANTS[47] is q_Cao in component params_BG (fmol).
* CONSTANTS[7] is K_Pi in component params_BG (per_fmol).
* CONSTANTS[49] is q_Pi in component params_BG (fmol).
* CONSTANTS[8] is K_ATPi in component params_BG (per_fmol).
* CONSTANTS[51] is q_ATPi in component params_BG (fmol).
* CONSTANTS[9] is K_ADPi in component params_BG (per_fmol).
* CONSTANTS[53] is q_ADPi in component params_BG (fmol).
* CONSTANTS[10] is K_1 in component params_BG (per_fmol).
* CONSTANTS[11] is q_init_1 in component params_BG (fmol).
* CONSTANTS[12] is K_2 in component params_BG (per_fmol).
* CONSTANTS[13] is q_init_2 in component params_BG (fmol).
* CONSTANTS[14] is K_3 in component params_BG (per_fmol).
* CONSTANTS[15] is q_init_3 in component params_BG (fmol).
* CONSTANTS[16] is K_4 in component params_BG (per_fmol).
* CONSTANTS[17] is q_init_4 in component params_BG (fmol).
* CONSTANTS[18] is K_5 in component params_BG (per_fmol).
* CONSTANTS[19] is q_init_5 in component params_BG (fmol).
* CONSTANTS[20] is K_6 in component params_BG (per_fmol).
* CONSTANTS[21] is q_init_6 in component params_BG (fmol).
* CONSTANTS[22] is kappa_r1 in component params_BG (fmol_per_s).
* CONSTANTS[23] is kappa_r2 in component params_BG (fmol_per_s).
* CONSTANTS[24] is kappa_r3 in component params_BG (fmol_per_s).
* CONSTANTS[25] is kappa_r4 in component params_BG (fmol_per_s).
* CONSTANTS[26] is kappa_r5 in component params_BG (fmol_per_s).
* CONSTANTS[27] is kappa_r6 in component params_BG (fmol_per_s).
* CONSTANTS[56] is mu_Hi in component BG_SERCA (J_per_mol).
* CONSTANTS[58] is mu_Ho in component BG_SERCA (J_per_mol).
* CONSTANTS[46] is mu_Cai in component BG_SERCA (J_per_mol).
* CONSTANTS[48] is mu_Cao in component BG_SERCA (J_per_mol).
* CONSTANTS[50] is mu_Pi in component BG_SERCA (J_per_mol).
* CONSTANTS[52] is mu_ATPi in component BG_SERCA (J_per_mol).
* CONSTANTS[54] is mu_ADPi in component BG_SERCA (J_per_mol).
* ALGEBRAIC[0] is mu_1 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[21] is v_1 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[1] is mu_2 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[42] is v_2 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[2] is mu_3 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[43] is v_3 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[3] is mu_4 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[32] is v_4 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[4] is mu_5 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[33] is v_5 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[5] is mu_6 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[22] is v_6 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[23] is V_Vm in component BG_SERCA (volt).
* ALGEBRAIC[20] is V0_Vm in component params_BG (volt).
* CONSTANTS[28] is z_zf1 in component params_BG (dimensionless).
* CONSTANTS[29] is z_zr1 in component params_BG (dimensionless).
* CONSTANTS[30] is z_zf2 in component params_BG (dimensionless).
* CONSTANTS[31] is z_zr2 in component params_BG (dimensionless).
* ALGEBRAIC[24] is Vm_zf1 in component BG_SERCA (volt).
* ALGEBRAIC[35] is I_zf1 in component BG_SERCA (fA).
* ALGEBRAIC[27] is mu_zf1 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[34] is v_zf1 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[26] is Vm_zr1 in component BG_SERCA (volt).
* ALGEBRAIC[37] is I_zr1 in component BG_SERCA (fA).
* ALGEBRAIC[29] is mu_zr1 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[36] is v_zr1 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[25] is Vm_zf2 in component BG_SERCA (volt).
* ALGEBRAIC[45] is I_zf2 in component BG_SERCA (fA).
* ALGEBRAIC[28] is mu_zf2 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[44] is v_zf2 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[38] is Vm_zr2 in component BG_SERCA (volt).
* ALGEBRAIC[47] is I_zr2 in component BG_SERCA (fA).
* ALGEBRAIC[39] is mu_zr2 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[46] is v_zr2 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[6] is A_f_r1 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[16] is v_r1 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[7] is A_r_r1 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[8] is A_f_r2 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[41] is v_r2 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[40] is A_r_r2 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[9] is A_f_r3 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[17] is v_r3 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[10] is A_r_r3 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[11] is A_f_r4 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[31] is v_r4 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[30] is A_r_r4 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[12] is A_f_r5 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[18] is v_r5 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[13] is A_r_r5 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[14] is A_f_r6 in component BG_SERCA (J_per_mol).
* ALGEBRAIC[19] is v_r6 in component BG_SERCA (fmol_per_s).
* ALGEBRAIC[15] is A_r_r6 in component BG_SERCA (J_per_mol).
* STATES[0] is q_1 in component BG_SERCA (fmol).
* STATES[1] is q_2 in component BG_SERCA (fmol).
* STATES[2] is q_3 in component BG_SERCA (fmol).
* STATES[3] is q_4 in component BG_SERCA (fmol).
* STATES[4] is q_5 in component BG_SERCA (fmol).
* STATES[5] is q_6 in component BG_SERCA (fmol).
* ALGEBRAIC[48] is Ii in component BG_SERCA (fA).
* CONSTANTS[32] is nH in component BG_SERCA (dimensionless).
* CONSTANTS[33] is nCa in component BG_SERCA (dimensionless).
* CONSTANTS[34] is kappa_r7 in component params_BG (fmol_per_s).
* CONSTANTS[35] is Cai in component params_BG (mM).
* CONSTANTS[36] is Cao in component params_BG (mM).
* CONSTANTS[37] is Hi in component params_BG (mM).
* CONSTANTS[38] is Ho in component params_BG (mM).
* CONSTANTS[39] is Pi in component params_BG (mM).
* CONSTANTS[40] is ATPi in component params_BG (mM).
* CONSTANTS[41] is ADPi in component params_BG (mM).
* CONSTANTS[42] is V_i in component params_BG (pL).
* CONSTANTS[43] is V_o in component params_BG (pL).
* STATES[6] is V_E in component params_BG (volt).
* CONSTANTS[44] is dt in component params_BG (second).
* RATES[0] is d/dt q_1 in component BG_SERCA (fmol).
* RATES[1] is d/dt q_2 in component BG_SERCA (fmol).
* RATES[2] is d/dt q_3 in component BG_SERCA (fmol).
* RATES[3] is d/dt q_4 in component BG_SERCA (fmol).
* RATES[4] is d/dt q_5 in component BG_SERCA (fmol).
* RATES[5] is d/dt q_6 in component BG_SERCA (fmol).
* RATES[6] is d/dt V_E in component params_BG (volt).
*/
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
CONSTANTS[0] = 8.31;
CONSTANTS[1] = 293;
CONSTANTS[2] = 96485;
CONSTANTS[3] = 1e-06;
CONSTANTS[4] = 1e-06;
CONSTANTS[5] = 1e-08;
CONSTANTS[6] = 1e-08;
CONSTANTS[7] = 1e-08;
CONSTANTS[8] = 1e-08;
CONSTANTS[9] = 1e-08;
CONSTANTS[10] = 1;
CONSTANTS[11] = 1;
CONSTANTS[12] = 1;
CONSTANTS[13] = 1;
CONSTANTS[14] = 1;
CONSTANTS[15] = 1;
CONSTANTS[16] = 1;
CONSTANTS[17] = 1;
CONSTANTS[18] = 1;
CONSTANTS[19] = 1;
CONSTANTS[20] = 1;
CONSTANTS[21] = 1;
CONSTANTS[22] = 1;
CONSTANTS[23] = 1;
CONSTANTS[24] = 1;
CONSTANTS[25] = 1;
CONSTANTS[26] = 1;
CONSTANTS[27] = 1;
CONSTANTS[28] = 1;
CONSTANTS[29] = 1;
CONSTANTS[30] = 1;
CONSTANTS[31] = 1;
CONSTANTS[32] = 1;
CONSTANTS[33] = 2;
CONSTANTS[34] = 1;
CONSTANTS[35] = 20;
CONSTANTS[36] = 100;
CONSTANTS[37] = 10e-3;
CONSTANTS[38] = 1e-12;
CONSTANTS[39] = 1e-12;
CONSTANTS[40] = 1e-12;
CONSTANTS[41] = 1e-12;
CONSTANTS[42] = 8.5e5;
CONSTANTS[43] = 8.5e5;
STATES[6] = -0.05;
CONSTANTS[44] = 1e-3;
CONSTANTS[45] = CONSTANTS[35]*CONSTANTS[42];
CONSTANTS[59] = 0.00000;
CONSTANTS[46] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[5]*CONSTANTS[45]);
CONSTANTS[47] = CONSTANTS[36]*CONSTANTS[43];
CONSTANTS[48] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[6]*CONSTANTS[47]);
CONSTANTS[49] = CONSTANTS[39]*CONSTANTS[43];
CONSTANTS[50] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[7]*CONSTANTS[49]);
CONSTANTS[51] = CONSTANTS[40]*CONSTANTS[43];
CONSTANTS[52] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[8]*CONSTANTS[51]);
CONSTANTS[53] = CONSTANTS[41]*CONSTANTS[43];
CONSTANTS[54] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[9]*CONSTANTS[53]);
CONSTANTS[55] = CONSTANTS[37]*CONSTANTS[42];
CONSTANTS[56] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[3]*CONSTANTS[55]);
CONSTANTS[57] = CONSTANTS[38]*CONSTANTS[43];
CONSTANTS[58] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[4]*CONSTANTS[57]);
STATES[0] = CONSTANTS[11];
STATES[1] = CONSTANTS[13];
STATES[2] = CONSTANTS[15];
STATES[3] = CONSTANTS[17];
STATES[4] = CONSTANTS[19];
STATES[5] = CONSTANTS[21];
}
void
computeRates(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
RATES[6] = CONSTANTS[59];
ALGEBRAIC[0] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[10]*STATES[0]);
ALGEBRAIC[6] = CONSTANTS[52]+ALGEBRAIC[0];
ALGEBRAIC[1] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[12]*STATES[1]);
ALGEBRAIC[7] = ALGEBRAIC[1];
ALGEBRAIC[16] = CONSTANTS[22]*(exp(ALGEBRAIC[6]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[7]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[5] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[20]*STATES[5]);
ALGEBRAIC[14] = ALGEBRAIC[5];
ALGEBRAIC[15] = ALGEBRAIC[0]+CONSTANTS[50];
ALGEBRAIC[19] = CONSTANTS[27]*(exp(ALGEBRAIC[14]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[15]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[21] = ALGEBRAIC[19] - ALGEBRAIC[16];
RATES[0] = ALGEBRAIC[21];
ALGEBRAIC[4] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[18]*STATES[4]);
ALGEBRAIC[12] = ALGEBRAIC[4];
ALGEBRAIC[13] = ALGEBRAIC[5]+ CONSTANTS[32]*CONSTANTS[58];
ALGEBRAIC[18] = CONSTANTS[26]*(exp(ALGEBRAIC[12]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[13]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[22] = ALGEBRAIC[18] - ALGEBRAIC[19];
RATES[5] = ALGEBRAIC[22];
ALGEBRAIC[2] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[14]*STATES[2]);
ALGEBRAIC[9] = ALGEBRAIC[2];
ALGEBRAIC[3] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[16]*STATES[3]);
ALGEBRAIC[10] = ALGEBRAIC[3]+CONSTANTS[54];
ALGEBRAIC[17] = CONSTANTS[24]*(exp(ALGEBRAIC[9]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[10]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[11] = ALGEBRAIC[3];
ALGEBRAIC[20] = STATES[6];
ALGEBRAIC[23] = ALGEBRAIC[20];
ALGEBRAIC[26] = ALGEBRAIC[23];
ALGEBRAIC[29] = CONSTANTS[29]*CONSTANTS[2]*ALGEBRAIC[26];
ALGEBRAIC[30] = ALGEBRAIC[4]+ CONSTANTS[33]*CONSTANTS[48]+ALGEBRAIC[29];
ALGEBRAIC[31] = CONSTANTS[25]*(exp(ALGEBRAIC[11]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[30]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[32] = ALGEBRAIC[17] - ALGEBRAIC[31];
RATES[3] = ALGEBRAIC[32];
ALGEBRAIC[33] = ALGEBRAIC[31] - ALGEBRAIC[18];
RATES[4] = ALGEBRAIC[33];
ALGEBRAIC[8] = ALGEBRAIC[1]+ CONSTANTS[33]*CONSTANTS[46];
ALGEBRAIC[38] = ALGEBRAIC[23];
ALGEBRAIC[39] = CONSTANTS[31]*CONSTANTS[2]*ALGEBRAIC[38];
ALGEBRAIC[40] = ALGEBRAIC[2]+ CONSTANTS[32]*CONSTANTS[56]+ALGEBRAIC[39];
ALGEBRAIC[41] = CONSTANTS[23]*(exp(ALGEBRAIC[8]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[40]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[42] = ALGEBRAIC[16] - ALGEBRAIC[41];
RATES[1] = ALGEBRAIC[42];
ALGEBRAIC[43] = ALGEBRAIC[41] - ALGEBRAIC[17];
RATES[2] = ALGEBRAIC[43];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[10]*STATES[0]);
ALGEBRAIC[6] = CONSTANTS[52]+ALGEBRAIC[0];
ALGEBRAIC[1] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[12]*STATES[1]);
ALGEBRAIC[7] = ALGEBRAIC[1];
ALGEBRAIC[16] = CONSTANTS[22]*(exp(ALGEBRAIC[6]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[7]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[5] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[20]*STATES[5]);
ALGEBRAIC[14] = ALGEBRAIC[5];
ALGEBRAIC[15] = ALGEBRAIC[0]+CONSTANTS[50];
ALGEBRAIC[19] = CONSTANTS[27]*(exp(ALGEBRAIC[14]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[15]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[21] = ALGEBRAIC[19] - ALGEBRAIC[16];
ALGEBRAIC[4] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[18]*STATES[4]);
ALGEBRAIC[12] = ALGEBRAIC[4];
ALGEBRAIC[13] = ALGEBRAIC[5]+ CONSTANTS[32]*CONSTANTS[58];
ALGEBRAIC[18] = CONSTANTS[26]*(exp(ALGEBRAIC[12]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[13]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[22] = ALGEBRAIC[18] - ALGEBRAIC[19];
ALGEBRAIC[2] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[14]*STATES[2]);
ALGEBRAIC[9] = ALGEBRAIC[2];
ALGEBRAIC[3] = CONSTANTS[0]*CONSTANTS[1]*log( CONSTANTS[16]*STATES[3]);
ALGEBRAIC[10] = ALGEBRAIC[3]+CONSTANTS[54];
ALGEBRAIC[17] = CONSTANTS[24]*(exp(ALGEBRAIC[9]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[10]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[11] = ALGEBRAIC[3];
ALGEBRAIC[20] = STATES[6];
ALGEBRAIC[23] = ALGEBRAIC[20];
ALGEBRAIC[26] = ALGEBRAIC[23];
ALGEBRAIC[29] = CONSTANTS[29]*CONSTANTS[2]*ALGEBRAIC[26];
ALGEBRAIC[30] = ALGEBRAIC[4]+ CONSTANTS[33]*CONSTANTS[48]+ALGEBRAIC[29];
ALGEBRAIC[31] = CONSTANTS[25]*(exp(ALGEBRAIC[11]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[30]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[32] = ALGEBRAIC[17] - ALGEBRAIC[31];
ALGEBRAIC[33] = ALGEBRAIC[31] - ALGEBRAIC[18];
ALGEBRAIC[8] = ALGEBRAIC[1]+ CONSTANTS[33]*CONSTANTS[46];
ALGEBRAIC[38] = ALGEBRAIC[23];
ALGEBRAIC[39] = CONSTANTS[31]*CONSTANTS[2]*ALGEBRAIC[38];
ALGEBRAIC[40] = ALGEBRAIC[2]+ CONSTANTS[32]*CONSTANTS[56]+ALGEBRAIC[39];
ALGEBRAIC[41] = CONSTANTS[23]*(exp(ALGEBRAIC[8]/( CONSTANTS[0]*CONSTANTS[1])) - exp(ALGEBRAIC[40]/( CONSTANTS[0]*CONSTANTS[1])));
ALGEBRAIC[42] = ALGEBRAIC[16] - ALGEBRAIC[41];
ALGEBRAIC[43] = ALGEBRAIC[41] - ALGEBRAIC[17];
ALGEBRAIC[24] = ALGEBRAIC[23];
ALGEBRAIC[25] = ALGEBRAIC[23];
ALGEBRAIC[27] = CONSTANTS[28]*CONSTANTS[2]*ALGEBRAIC[24];
ALGEBRAIC[28] = CONSTANTS[30]*CONSTANTS[2]*ALGEBRAIC[25];
ALGEBRAIC[34] = ALGEBRAIC[31];
ALGEBRAIC[35] = CONSTANTS[28]*CONSTANTS[2]*ALGEBRAIC[34];
ALGEBRAIC[36] = ALGEBRAIC[31];
ALGEBRAIC[37] = CONSTANTS[29]*CONSTANTS[2]*ALGEBRAIC[36];
ALGEBRAIC[44] = ALGEBRAIC[41];
ALGEBRAIC[45] = CONSTANTS[30]*CONSTANTS[2]*ALGEBRAIC[44];
ALGEBRAIC[46] = ALGEBRAIC[41];
ALGEBRAIC[47] = CONSTANTS[31]*CONSTANTS[2]*ALGEBRAIC[46];
ALGEBRAIC[48] = ALGEBRAIC[35]+ALGEBRAIC[37]+ALGEBRAIC[45]+ALGEBRAIC[47];
}
