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/*
   There are a total of 17 entries in the algebraic variable array.
   There are a total of 11 entries in each of the rate and state variable arrays.
   There are a total of 20 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (second).
 * STATES[0] is q_L in component environment (fmol).
 * STATES[1] is q_K1 in component environment (fmol).
 * STATES[2] is q_K2 in component environment (fmol).
 * STATES[3] is q_LK1 in component environment (fmol).
 * STATES[4] is q_P in component environment (fmol).
 * STATES[5] is q_LK1K2 in component environment (fmol).
 * STATES[6] is q_LK1K2P in component environment (fmol).
 * STATES[7] is q_Ubiq in component environment (fmol).
 * STATES[8] is q_LKKPU in component environment (fmol).
 * STATES[9] is q_LKKPUtag in component environment (fmol).
 * STATES[10] is q_LPUtag in component environment (fmol).
 * ALGEBRAIC[11] is v_Re1 in component RTK (fmol_per_sec).
 * ALGEBRAIC[12] is v_Re2 in component RTK (fmol_per_sec).
 * ALGEBRAIC[13] is v_Re3 in component RTK (fmol_per_sec).
 * ALGEBRAIC[14] is v_Re4 in component RTK (fmol_per_sec).
 * ALGEBRAIC[15] is v_Re5 in component RTK (fmol_per_sec).
 * ALGEBRAIC[16] is v_Re6 in component RTK (fmol_per_sec).
 * CONSTANTS[0] is kappa_Re1 in component RTK_parameters (fmol_per_sec).
 * CONSTANTS[1] is kappa_Re2 in component RTK_parameters (fmol_per_sec).
 * CONSTANTS[2] is kappa_Re3 in component RTK_parameters (fmol_per_sec).
 * CONSTANTS[3] is kappa_Re4 in component RTK_parameters (fmol_per_sec).
 * CONSTANTS[4] is kappa_Re5 in component RTK_parameters (fmol_per_sec).
 * CONSTANTS[5] is kappa_Re6 in component RTK_parameters (fmol_per_sec).
 * CONSTANTS[6] is K_L in component RTK_parameters (per_fmol).
 * CONSTANTS[7] is K_K1 in component RTK_parameters (per_fmol).
 * CONSTANTS[8] is K_K2 in component RTK_parameters (per_fmol).
 * CONSTANTS[9] is K_LK1 in component RTK_parameters (per_fmol).
 * CONSTANTS[10] is K_P in component RTK_parameters (per_fmol).
 * CONSTANTS[11] is K_LK1K2 in component RTK_parameters (per_fmol).
 * CONSTANTS[12] is K_LK1K2P in component RTK_parameters (per_fmol).
 * CONSTANTS[13] is K_Ubiq in component RTK_parameters (per_fmol).
 * CONSTANTS[14] is K_LKKPU in component RTK_parameters (per_fmol).
 * CONSTANTS[15] is K_LKKPUtag in component RTK_parameters (per_fmol).
 * CONSTANTS[16] is K_LPUtag in component RTK_parameters (per_fmol).
 * CONSTANTS[17] is R in component constants (J_per_K_per_mol).
 * CONSTANTS[18] is T in component constants (kelvin).
 * ALGEBRAIC[0] is mu_L in component RTK (J_per_mol).
 * ALGEBRAIC[1] is mu_K1 in component RTK (J_per_mol).
 * ALGEBRAIC[2] is mu_K2 in component RTK (J_per_mol).
 * ALGEBRAIC[3] is mu_LK1 in component RTK (J_per_mol).
 * ALGEBRAIC[4] is mu_P in component RTK (J_per_mol).
 * ALGEBRAIC[5] is mu_LK1K2 in component RTK (J_per_mol).
 * ALGEBRAIC[6] is mu_LK1K2P in component RTK (J_per_mol).
 * ALGEBRAIC[7] is mu_Ubiq in component RTK (J_per_mol).
 * ALGEBRAIC[8] is mu_LKKPU in component RTK (J_per_mol).
 * ALGEBRAIC[9] is mu_LKKPUtag in component RTK (J_per_mol).
 * ALGEBRAIC[10] is mu_LPUtag in component RTK (J_per_mol).
 * CONSTANTS[19] is F in component constants (C_per_mol).
 * RATES[0] is d/dt q_L in component environment (fmol).
 * RATES[1] is d/dt q_K1 in component environment (fmol).
 * RATES[2] is d/dt q_K2 in component environment (fmol).
 * RATES[3] is d/dt q_LK1 in component environment (fmol).
 * RATES[4] is d/dt q_P in component environment (fmol).
 * RATES[5] is d/dt q_LK1K2 in component environment (fmol).
 * RATES[6] is d/dt q_LK1K2P in component environment (fmol).
 * RATES[7] is d/dt q_Ubiq in component environment (fmol).
 * RATES[8] is d/dt q_LKKPU in component environment (fmol).
 * RATES[9] is d/dt q_LKKPUtag in component environment (fmol).
 * RATES[10] is d/dt q_LPUtag in component environment (fmol).
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 1;
STATES[1] = 1e-3;
STATES[2] = 1e-3;
STATES[3] = 1e-6;
STATES[4] = 1;
STATES[5] = 1e-9;
STATES[6] = 1e-9;
STATES[7] = 1;
STATES[8] = 1e-88;
STATES[9] = 1e-88;
STATES[10] = 1e-88;
CONSTANTS[0] = 1.31758e-07;
CONSTANTS[1] = 0.0862846;
CONSTANTS[2] = 0.00038952;
CONSTANTS[3] = 2.66799e-09;
CONSTANTS[4] = 26.6799;
CONSTANTS[5] = 2667.99;
CONSTANTS[6] = 8.32274e+08;
CONSTANTS[7] = 0.000770619;
CONSTANTS[8] = 44390;
CONSTANTS[9] = 0.22063;
CONSTANTS[10] = 6.4394e+12;
CONSTANTS[11] = 3.36906e-07;
CONSTANTS[12] = 7.46298e-05;
CONSTANTS[13] = 4.24411e+13;
CONSTANTS[14] = 10.8958;
CONSTANTS[15] = 1.08958e-11;
CONSTANTS[16] = 2.69163e-14;
CONSTANTS[17] = 8.31;
CONSTANTS[18] = 310;
CONSTANTS[19] = 96485;
}
void
computeRates(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[6]*STATES[0]);
ALGEBRAIC[1] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[7]*STATES[1]);
ALGEBRAIC[3] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[9]*STATES[3]);
ALGEBRAIC[11] =  CONSTANTS[0]*(exp((ALGEBRAIC[0]+ALGEBRAIC[1])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[3]/( CONSTANTS[17]*CONSTANTS[18])));
RATES[0] = - ALGEBRAIC[11];
ALGEBRAIC[2] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[8]*STATES[2]);
ALGEBRAIC[5] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[11]*STATES[5]);
ALGEBRAIC[12] =  CONSTANTS[1]*(exp((ALGEBRAIC[3]+ALGEBRAIC[2])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[5]/( CONSTANTS[17]*CONSTANTS[18])));
RATES[3] = ALGEBRAIC[11] - ALGEBRAIC[12];
ALGEBRAIC[4] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[10]*STATES[4]);
ALGEBRAIC[6] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[12]*STATES[6]);
ALGEBRAIC[13] =  CONSTANTS[2]*(exp((ALGEBRAIC[4]+ALGEBRAIC[5])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[6]/( CONSTANTS[17]*CONSTANTS[18])));
RATES[4] = - ALGEBRAIC[13];
RATES[5] = ALGEBRAIC[12] - ALGEBRAIC[13];
ALGEBRAIC[7] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[13]*STATES[7]);
ALGEBRAIC[8] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[14]*STATES[8]);
ALGEBRAIC[14] =  CONSTANTS[3]*(exp((ALGEBRAIC[7]+ALGEBRAIC[6])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])));
RATES[6] = ALGEBRAIC[13] - ALGEBRAIC[14];
RATES[7] = - ALGEBRAIC[14];
ALGEBRAIC[10] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[16]*STATES[10]);
ALGEBRAIC[15] =  CONSTANTS[4]*(exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])) - exp((ALGEBRAIC[1]+ALGEBRAIC[2]+ALGEBRAIC[10])/( CONSTANTS[17]*CONSTANTS[18])));
RATES[1] = - ALGEBRAIC[11]+ALGEBRAIC[15];
RATES[2] = - ALGEBRAIC[12]+ALGEBRAIC[15];
RATES[10] = ALGEBRAIC[15];
ALGEBRAIC[9] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[15]*STATES[9]);
ALGEBRAIC[16] =  CONSTANTS[5]*(exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[9]/( CONSTANTS[17]*CONSTANTS[18])));
RATES[8] = (ALGEBRAIC[14] - ALGEBRAIC[15]) - ALGEBRAIC[16];
RATES[9] = ALGEBRAIC[16];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[6]*STATES[0]);
ALGEBRAIC[1] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[7]*STATES[1]);
ALGEBRAIC[3] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[9]*STATES[3]);
ALGEBRAIC[11] =  CONSTANTS[0]*(exp((ALGEBRAIC[0]+ALGEBRAIC[1])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[3]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[2] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[8]*STATES[2]);
ALGEBRAIC[5] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[11]*STATES[5]);
ALGEBRAIC[12] =  CONSTANTS[1]*(exp((ALGEBRAIC[3]+ALGEBRAIC[2])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[5]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[4] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[10]*STATES[4]);
ALGEBRAIC[6] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[12]*STATES[6]);
ALGEBRAIC[13] =  CONSTANTS[2]*(exp((ALGEBRAIC[4]+ALGEBRAIC[5])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[6]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[7] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[13]*STATES[7]);
ALGEBRAIC[8] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[14]*STATES[8]);
ALGEBRAIC[14] =  CONSTANTS[3]*(exp((ALGEBRAIC[7]+ALGEBRAIC[6])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[10] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[16]*STATES[10]);
ALGEBRAIC[15] =  CONSTANTS[4]*(exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])) - exp((ALGEBRAIC[1]+ALGEBRAIC[2]+ALGEBRAIC[10])/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[9] =  CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[15]*STATES[9]);
ALGEBRAIC[16] =  CONSTANTS[5]*(exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[9]/( CONSTANTS[17]*CONSTANTS[18])));
}