Generated Code
The following is c_ida code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
/*
There are a total of 17 entries in the algebraic variable array.
There are a total of 11 entries in each of the rate and state variable arrays.
There are a total of 20 entries in the constant variable array.
*/
/*
* VOI is time in component environment (second).
* STATES[0] is q_L in component environment (fmol).
* STATES[1] is q_K1 in component environment (fmol).
* STATES[2] is q_K2 in component environment (fmol).
* STATES[3] is q_LK1 in component environment (fmol).
* STATES[4] is q_P in component environment (fmol).
* STATES[5] is q_LK1K2 in component environment (fmol).
* STATES[6] is q_LK1K2P in component environment (fmol).
* STATES[7] is q_Ubiq in component environment (fmol).
* STATES[8] is q_LKKPU in component environment (fmol).
* STATES[9] is q_LKKPUtag in component environment (fmol).
* STATES[10] is q_LPUtag in component environment (fmol).
* ALGEBRAIC[11] is v_Re1 in component RTK (fmol_per_sec).
* ALGEBRAIC[12] is v_Re2 in component RTK (fmol_per_sec).
* ALGEBRAIC[13] is v_Re3 in component RTK (fmol_per_sec).
* ALGEBRAIC[14] is v_Re4 in component RTK (fmol_per_sec).
* ALGEBRAIC[15] is v_Re5 in component RTK (fmol_per_sec).
* ALGEBRAIC[16] is v_Re6 in component RTK (fmol_per_sec).
* CONSTANTS[0] is kappa_Re1 in component RTK_parameters (fmol_per_sec).
* CONSTANTS[1] is kappa_Re2 in component RTK_parameters (fmol_per_sec).
* CONSTANTS[2] is kappa_Re3 in component RTK_parameters (fmol_per_sec).
* CONSTANTS[3] is kappa_Re4 in component RTK_parameters (fmol_per_sec).
* CONSTANTS[4] is kappa_Re5 in component RTK_parameters (fmol_per_sec).
* CONSTANTS[5] is kappa_Re6 in component RTK_parameters (fmol_per_sec).
* CONSTANTS[6] is K_L in component RTK_parameters (per_fmol).
* CONSTANTS[7] is K_K1 in component RTK_parameters (per_fmol).
* CONSTANTS[8] is K_K2 in component RTK_parameters (per_fmol).
* CONSTANTS[9] is K_LK1 in component RTK_parameters (per_fmol).
* CONSTANTS[10] is K_P in component RTK_parameters (per_fmol).
* CONSTANTS[11] is K_LK1K2 in component RTK_parameters (per_fmol).
* CONSTANTS[12] is K_LK1K2P in component RTK_parameters (per_fmol).
* CONSTANTS[13] is K_Ubiq in component RTK_parameters (per_fmol).
* CONSTANTS[14] is K_LKKPU in component RTK_parameters (per_fmol).
* CONSTANTS[15] is K_LKKPUtag in component RTK_parameters (per_fmol).
* CONSTANTS[16] is K_LPUtag in component RTK_parameters (per_fmol).
* CONSTANTS[17] is R in component constants (J_per_K_per_mol).
* CONSTANTS[18] is T in component constants (kelvin).
* ALGEBRAIC[0] is mu_L in component RTK (J_per_mol).
* ALGEBRAIC[1] is mu_K1 in component RTK (J_per_mol).
* ALGEBRAIC[2] is mu_K2 in component RTK (J_per_mol).
* ALGEBRAIC[3] is mu_LK1 in component RTK (J_per_mol).
* ALGEBRAIC[4] is mu_P in component RTK (J_per_mol).
* ALGEBRAIC[5] is mu_LK1K2 in component RTK (J_per_mol).
* ALGEBRAIC[6] is mu_LK1K2P in component RTK (J_per_mol).
* ALGEBRAIC[7] is mu_Ubiq in component RTK (J_per_mol).
* ALGEBRAIC[8] is mu_LKKPU in component RTK (J_per_mol).
* ALGEBRAIC[9] is mu_LKKPUtag in component RTK (J_per_mol).
* ALGEBRAIC[10] is mu_LPUtag in component RTK (J_per_mol).
* CONSTANTS[19] is F in component constants (C_per_mol).
* RATES[0] is d/dt q_L in component environment (fmol).
* RATES[1] is d/dt q_K1 in component environment (fmol).
* RATES[2] is d/dt q_K2 in component environment (fmol).
* RATES[3] is d/dt q_LK1 in component environment (fmol).
* RATES[4] is d/dt q_P in component environment (fmol).
* RATES[5] is d/dt q_LK1K2 in component environment (fmol).
* RATES[6] is d/dt q_LK1K2P in component environment (fmol).
* RATES[7] is d/dt q_Ubiq in component environment (fmol).
* RATES[8] is d/dt q_LKKPU in component environment (fmol).
* RATES[9] is d/dt q_LKKPUtag in component environment (fmol).
* RATES[10] is d/dt q_LPUtag in component environment (fmol).
* There are a total of 0 condition variables.
*/
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 1;
STATES[1] = 1e-3;
STATES[2] = 1e-3;
STATES[3] = 1e-6;
STATES[4] = 1;
STATES[5] = 1e-9;
STATES[6] = 1e-9;
STATES[7] = 1;
STATES[8] = 1e-88;
STATES[9] = 1e-88;
STATES[10] = 1e-88;
CONSTANTS[0] = 1.31758e-07;
CONSTANTS[1] = 0.0862846;
CONSTANTS[2] = 0.00038952;
CONSTANTS[3] = 2.66799e-09;
CONSTANTS[4] = 26.6799;
CONSTANTS[5] = 2667.99;
CONSTANTS[6] = 8.32274e+08;
CONSTANTS[7] = 0.000770619;
CONSTANTS[8] = 44390;
CONSTANTS[9] = 0.22063;
CONSTANTS[10] = 6.4394e+12;
CONSTANTS[11] = 3.36906e-07;
CONSTANTS[12] = 7.46298e-05;
CONSTANTS[13] = 4.24411e+13;
CONSTANTS[14] = 10.8958;
CONSTANTS[15] = 1.08958e-11;
CONSTANTS[16] = 2.69163e-14;
CONSTANTS[17] = 8.31;
CONSTANTS[18] = 310;
CONSTANTS[19] = 96485;
RATES[0] = 0.1001;
RATES[1] = 0.1001;
RATES[2] = 0.1001;
RATES[3] = 0.1001;
RATES[4] = 0.1001;
RATES[5] = 0.1001;
RATES[6] = 0.1001;
RATES[7] = 0.1001;
RATES[8] = 0.1001;
RATES[9] = 0.1001;
RATES[10] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - - ALGEBRAIC[11];
resid[1] = RATES[1] - - ALGEBRAIC[11]+ALGEBRAIC[15];
resid[2] = RATES[2] - - ALGEBRAIC[12]+ALGEBRAIC[15];
resid[3] = RATES[3] - ALGEBRAIC[11] - ALGEBRAIC[12];
resid[4] = RATES[4] - - ALGEBRAIC[13];
resid[5] = RATES[5] - ALGEBRAIC[12] - ALGEBRAIC[13];
resid[6] = RATES[6] - ALGEBRAIC[13] - ALGEBRAIC[14];
resid[7] = RATES[7] - - ALGEBRAIC[14];
resid[8] = RATES[8] - (ALGEBRAIC[14] - ALGEBRAIC[15]) - ALGEBRAIC[16];
resid[9] = RATES[9] - ALGEBRAIC[16];
resid[10] = RATES[10] - ALGEBRAIC[15];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[6]*STATES[0]);
ALGEBRAIC[1] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[7]*STATES[1]);
ALGEBRAIC[3] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[9]*STATES[3]);
ALGEBRAIC[11] = CONSTANTS[0]*(exp((ALGEBRAIC[0]+ALGEBRAIC[1])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[3]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[2] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[8]*STATES[2]);
ALGEBRAIC[5] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[11]*STATES[5]);
ALGEBRAIC[12] = CONSTANTS[1]*(exp((ALGEBRAIC[3]+ALGEBRAIC[2])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[5]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[4] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[10]*STATES[4]);
ALGEBRAIC[6] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[12]*STATES[6]);
ALGEBRAIC[13] = CONSTANTS[2]*(exp((ALGEBRAIC[4]+ALGEBRAIC[5])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[6]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[7] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[13]*STATES[7]);
ALGEBRAIC[8] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[14]*STATES[8]);
ALGEBRAIC[14] = CONSTANTS[3]*(exp((ALGEBRAIC[7]+ALGEBRAIC[6])/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[10] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[16]*STATES[10]);
ALGEBRAIC[15] = CONSTANTS[4]*(exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])) - exp((ALGEBRAIC[1]+ALGEBRAIC[2]+ALGEBRAIC[10])/( CONSTANTS[17]*CONSTANTS[18])));
ALGEBRAIC[9] = CONSTANTS[17]*CONSTANTS[18]*log( CONSTANTS[15]*STATES[9]);
ALGEBRAIC[16] = CONSTANTS[5]*(exp(ALGEBRAIC[8]/( CONSTANTS[17]*CONSTANTS[18])) - exp(ALGEBRAIC[9]/( CONSTANTS[17]*CONSTANTS[18])));
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
SI[6] = 1.0;
SI[7] = 1.0;
SI[8] = 1.0;
SI[9] = 1.0;
SI[10] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}
