Generated Code
The following is matlab code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
function [VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction()
% This is the "main function". In Matlab, things work best if you rename this function to match the filename.
[VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel();
end
function [algebraicVariableCount] = getAlgebraicVariableCount()
% Used later when setting a global variable with the number of algebraic variables.
% Note: This is not the "main method".
algebraicVariableCount =35;
end
% There are a total of 29 entries in each of the rate and state variable arrays.
% There are a total of 45 entries in the constant variable array.
%
function [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel()
% Create ALGEBRAIC of correct size
global algebraicVariableCount; algebraicVariableCount = getAlgebraicVariableCount();
% Initialise constants and state variables
[INIT_STATES, CONSTANTS] = initConsts;
% Set timespan to solve over
tspan = [0, 10];
% Set numerical accuracy options for ODE solver
options = odeset('RelTol', 1e-06, 'AbsTol', 1e-06, 'MaxStep', 1);
% Solve model with ODE solver
[VOI, STATES] = ode15s(@(VOI, STATES)computeRates(VOI, STATES, CONSTANTS), tspan, INIT_STATES, options);
% Compute algebraic variables
[RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS);
ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI);
% Plot state variables against variable of integration
[LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends();
figure();
plot(VOI, STATES);
xlabel(LEGEND_VOI);
l = legend(LEGEND_STATES);
set(l,'Interpreter','none');
end
function [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends()
LEGEND_STATES = ''; LEGEND_ALGEBRAIC = ''; LEGEND_VOI = ''; LEGEND_CONSTANTS = '';
LEGEND_VOI = strpad('time in component environment (minute)');
LEGEND_STATES(:,1) = strpad('BMK1 in component BMK1 (micromolar)');
LEGEND_ALGEBRAIC(:,10) = strpad('v10a in component v10 (flux)');
LEGEND_ALGEBRAIC(:,11) = strpad('v10b in component v10 (flux)');
LEGEND_STATES(:,2) = strpad('MRNA in component MRNA (micromolar)');
LEGEND_ALGEBRAIC(:,29) = strpad('v18 in component v18 (flux)');
LEGEND_ALGEBRAIC(:,31) = strpad('v19 in component v19 (flux)');
LEGEND_STATES(:,3) = strpad('NFATc in component NFATc (micromolar)');
LEGEND_ALGEBRAIC(:,1) = strpad('v1 in component v1 (flux)');
LEGEND_ALGEBRAIC(:,32) = strpad('v14 in component v14 (flux)');
LEGEND_ALGEBRAIC(:,35) = strpad('v15 in component v15 (flux)');
LEGEND_STATES(:,4) = strpad('NFATn in component NFATn (micromolar)');
LEGEND_ALGEBRAIC(:,20) = strpad('v16 in component v16 (flux)');
LEGEND_ALGEBRAIC(:,26) = strpad('v17 in component v17 (flux)');
LEGEND_STATES(:,5) = strpad('NFATpc in component NFATpc (micromolar)');
LEGEND_ALGEBRAIC(:,2) = strpad('v2 in component v2 (flux)');
LEGEND_ALGEBRAIC(:,9) = strpad('v9 in component v9 (flux)');
LEGEND_STATES(:,6) = strpad('NFATpn in component NFATpn (micromolar)');
LEGEND_STATES(:,7) = strpad('GSK3betac in component GSK3betac (micromolar)');
LEGEND_ALGEBRAIC(:,3) = strpad('v3 in component v3 (flux)');
LEGEND_ALGEBRAIC(:,17) = strpad('v12a in component v12 (flux)');
LEGEND_ALGEBRAIC(:,19) = strpad('v12b in component v12 (flux)');
LEGEND_ALGEBRAIC(:,33) = strpad('v15a in component v15 (flux)');
LEGEND_ALGEBRAIC(:,34) = strpad('v15b in component v15 (flux)');
LEGEND_STATES(:,8) = strpad('GSK3betan in component GSK3betan (micromolar)');
LEGEND_ALGEBRAIC(:,22) = strpad('v17a in component v17 (flux)');
LEGEND_ALGEBRAIC(:,24) = strpad('v17b in component v17 (flux)');
LEGEND_STATES(:,9) = strpad('CaNc in component CaNc (micromolar)');
LEGEND_ALGEBRAIC(:,6) = strpad('v6 in component v6 (flux)');
LEGEND_STATES(:,10) = strpad('CaNc_star in component CaNc_star (micromolar)');
LEGEND_ALGEBRAIC(:,4) = strpad('v4 in component v4 (flux)');
LEGEND_ALGEBRAIC(:,7) = strpad('v7 in component v7 (flux)');
LEGEND_ALGEBRAIC(:,13) = strpad('v11a in component v11 (flux)');
LEGEND_ALGEBRAIC(:,14) = strpad('v11b in component v11 (flux)');
LEGEND_ALGEBRAIC(:,23) = strpad('v13a in component v13 (flux)');
LEGEND_ALGEBRAIC(:,25) = strpad('v13b in component v13 (flux)');
LEGEND_ALGEBRAIC(:,27) = strpad('v14a in component v14 (flux)');
LEGEND_ALGEBRAIC(:,30) = strpad('v14b in component v14 (flux)');
LEGEND_STATES(:,11) = strpad('CaNn_star in component CaNn_star (micromolar)');
LEGEND_ALGEBRAIC(:,16) = strpad('v16a in component v16 (flux)');
LEGEND_ALGEBRAIC(:,18) = strpad('v16b in component v16 (flux)');
LEGEND_STATES(:,12) = strpad('CaNn in component CaNn (micromolar)');
LEGEND_STATES(:,13) = strpad('CaM in component CaM (micromolar)');
LEGEND_ALGEBRAIC(:,5) = strpad('v5 in component v5 (flux)');
LEGEND_STATES(:,14) = strpad('CaMCa in component CaMCa (micromolar)');
LEGEND_STATES(:,15) = strpad('MCIP in component MCIP (micromolar)');
LEGEND_ALGEBRAIC(:,12) = strpad('v10 in component v10 (flux)');
LEGEND_ALGEBRAIC(:,15) = strpad('v11 in component v11 (flux)');
LEGEND_STATES(:,16) = strpad('MCIPp in component MCIPp (micromolar)');
LEGEND_ALGEBRAIC(:,21) = strpad('v12 in component v12 (flux)');
LEGEND_ALGEBRAIC(:,28) = strpad('v13 in component v13 (flux)');
LEGEND_STATES(:,17) = strpad('MCIPpp in component MCIPpp (micromolar)');
LEGEND_ALGEBRAIC(:,8) = strpad('v8 in component v8 (flux)');
LEGEND_STATES(:,18) = strpad('Comp1 in component Comp1 (micromolar)');
LEGEND_STATES(:,19) = strpad('Comp2 in component Comp2 (micromolar)');
LEGEND_STATES(:,20) = strpad('Comp3 in component Comp3 (micromolar)');
LEGEND_STATES(:,21) = strpad('P1433 in component P1433 (micromolar)');
LEGEND_STATES(:,22) = strpad('MCIP_BMK1 in component MCIP_BMK1 (micromolar)');
LEGEND_STATES(:,23) = strpad('MCIPp_CaNc_star in component MCIPp_CaNc_star (micromolar)');
LEGEND_STATES(:,24) = strpad('MCIPp_GSK3betac in component MCIPp_GSK3betac (micromolar)');
LEGEND_STATES(:,25) = strpad('MCIPpp_CaNc_star in component MCIPpp_CaNc_star (micromolar)');
LEGEND_STATES(:,26) = strpad('NFATpc_CaNc_star in component NFATpc_CaNc_star (micromolar)');
LEGEND_STATES(:,27) = strpad('NFATc_GSK3betac in component NFATc_GSK3betac (micromolar)');
LEGEND_STATES(:,28) = strpad('NFATpn_CaNn_star in component NFATpn_CaNn_star (micromolar)');
LEGEND_STATES(:,29) = strpad('NFATn_GSK3betan in component NFATn_GSK3betan (micromolar)');
LEGEND_CONSTANTS(:,1) = strpad('k29 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,2) = strpad('k30 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,3) = strpad('k31 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,4) = strpad('k32 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,5) = strpad('k33 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,6) = strpad('k34 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,7) = strpad('Ca in component model_parameters (micromolar)');
LEGEND_CONSTANTS(:,8) = strpad('k1 in component model_parameters (fifth_order_rate_constant)');
LEGEND_CONSTANTS(:,9) = strpad('k2 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,10) = strpad('k3 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,11) = strpad('k4 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,12) = strpad('k5 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,13) = strpad('k6 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,14) = strpad('k19 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,15) = strpad('k20 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,16) = strpad('k27 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,17) = strpad('k28 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,18) = strpad('k7 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,19) = strpad('k8 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,20) = strpad('k9 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,21) = strpad('k10 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,22) = strpad('k11 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,23) = strpad('k12 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,24) = strpad('k13 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,25) = strpad('k14 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,26) = strpad('k15 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,27) = strpad('k16 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,28) = strpad('k17 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,29) = strpad('k18 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,30) = strpad('k21 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,31) = strpad('k22 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,32) = strpad('k23 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,33) = strpad('k24 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,34) = strpad('k25 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,35) = strpad('k26 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,36) = strpad('k35 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,37) = strpad('k36 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,38) = strpad('k37 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,39) = strpad('k38 in component model_parameters (second_order_rate_constant)');
LEGEND_CONSTANTS(:,40) = strpad('k39 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,41) = strpad('k40 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,42) = strpad('k41 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,43) = strpad('k42 in component model_parameters (first_order_rate_constant)');
LEGEND_CONSTANTS(:,44) = strpad('t_half in component model_parameters (minute)');
LEGEND_CONSTANTS(:,45) = strpad('k43 in component model_parameters (first_order_rate_constant)');
LEGEND_RATES(:,1) = strpad('d/dt BMK1 in component BMK1 (micromolar)');
LEGEND_RATES(:,2) = strpad('d/dt MRNA in component MRNA (micromolar)');
LEGEND_RATES(:,3) = strpad('d/dt NFATc in component NFATc (micromolar)');
LEGEND_RATES(:,4) = strpad('d/dt NFATn in component NFATn (micromolar)');
LEGEND_RATES(:,5) = strpad('d/dt NFATpc in component NFATpc (micromolar)');
LEGEND_RATES(:,6) = strpad('d/dt NFATpn in component NFATpn (micromolar)');
LEGEND_RATES(:,7) = strpad('d/dt GSK3betac in component GSK3betac (micromolar)');
LEGEND_RATES(:,8) = strpad('d/dt GSK3betan in component GSK3betan (micromolar)');
LEGEND_RATES(:,9) = strpad('d/dt CaNc in component CaNc (micromolar)');
LEGEND_RATES(:,10) = strpad('d/dt CaNc_star in component CaNc_star (micromolar)');
LEGEND_RATES(:,11) = strpad('d/dt CaNn_star in component CaNn_star (micromolar)');
LEGEND_RATES(:,12) = strpad('d/dt CaNn in component CaNn (micromolar)');
LEGEND_RATES(:,13) = strpad('d/dt CaM in component CaM (micromolar)');
LEGEND_RATES(:,14) = strpad('d/dt CaMCa in component CaMCa (micromolar)');
LEGEND_RATES(:,15) = strpad('d/dt MCIP in component MCIP (micromolar)');
LEGEND_RATES(:,16) = strpad('d/dt MCIPp in component MCIPp (micromolar)');
LEGEND_RATES(:,17) = strpad('d/dt MCIPpp in component MCIPpp (micromolar)');
LEGEND_RATES(:,18) = strpad('d/dt Comp1 in component Comp1 (micromolar)');
LEGEND_RATES(:,19) = strpad('d/dt Comp2 in component Comp2 (micromolar)');
LEGEND_RATES(:,20) = strpad('d/dt Comp3 in component Comp3 (micromolar)');
LEGEND_RATES(:,21) = strpad('d/dt P1433 in component P1433 (micromolar)');
LEGEND_RATES(:,22) = strpad('d/dt MCIP_BMK1 in component MCIP_BMK1 (micromolar)');
LEGEND_RATES(:,23) = strpad('d/dt MCIPp_CaNc_star in component MCIPp_CaNc_star (micromolar)');
LEGEND_RATES(:,24) = strpad('d/dt MCIPp_GSK3betac in component MCIPp_GSK3betac (micromolar)');
LEGEND_RATES(:,25) = strpad('d/dt MCIPpp_CaNc_star in component MCIPpp_CaNc_star (micromolar)');
LEGEND_RATES(:,26) = strpad('d/dt NFATpc_CaNc_star in component NFATpc_CaNc_star (micromolar)');
LEGEND_RATES(:,27) = strpad('d/dt NFATc_GSK3betac in component NFATc_GSK3betac (micromolar)');
LEGEND_RATES(:,28) = strpad('d/dt NFATpn_CaNn_star in component NFATpn_CaNn_star (micromolar)');
LEGEND_RATES(:,29) = strpad('d/dt NFATn_GSK3betan in component NFATn_GSK3betan (micromolar)');
LEGEND_STATES = LEGEND_STATES';
LEGEND_ALGEBRAIC = LEGEND_ALGEBRAIC';
LEGEND_RATES = LEGEND_RATES';
LEGEND_CONSTANTS = LEGEND_CONSTANTS';
end
function [STATES, CONSTANTS] = initConsts()
VOI = 0; CONSTANTS = []; STATES = []; ALGEBRAIC = [];
STATES(:,1) = 0.012;
STATES(:,2) = 3.33E-4;
STATES(:,3) = 2E-5;
STATES(:,4) = 4.99E-4;
STATES(:,5) = 4.94E-3;
STATES(:,6) = 8.01E-5;
STATES(:,7) = 0.17;
STATES(:,8) = 0.339;
STATES(:,9) = 0.91;
STATES(:,10) = 0.0275;
STATES(:,11) = 0.0568;
STATES(:,12) = 0.0057;
STATES(:,13) = 25.2;
STATES(:,14) = 7.88E-7;
STATES(:,15) = 2.15E-4;
STATES(:,16) = 7.76E-3;
STATES(:,17) = 0.0798;
STATES(:,18) = 5.21E-3;
STATES(:,19) = 0.283;
STATES(:,20) = 0.014;
STATES(:,21) = 0.708;
STATES(:,22) = 2.14E-5;
STATES(:,23) = 1.07E-4;
STATES(:,24) = 1.1E-3;
STATES(:,25) = 1.1E-3;
STATES(:,26) = 8.15E-5;
STATES(:,27) = 1.36E-6;
STATES(:,28) = 2.27E-6;
STATES(:,29) = 8.46E-5;
CONSTANTS(:,1) = 0.4;
CONSTANTS(:,2) = 0.1;
CONSTANTS(:,3) = 0.1;
CONSTANTS(:,4) = 0.05;
CONSTANTS(:,5) = 0.114;
CONSTANTS(:,6) = 0.0552;
CONSTANTS(:,7) = 0.2;
CONSTANTS(:,8) = 5;
CONSTANTS(:,9) = 100;
CONSTANTS(:,10) = 2760;
CONSTANTS(:,11) = 0.072;
CONSTANTS(:,12) = 50;
CONSTANTS(:,13) = 0.0567;
CONSTANTS(:,14) = 0.5;
CONSTANTS(:,15) = 0.1;
CONSTANTS(:,16) = 0.4;
CONSTANTS(:,17) = 0.1;
CONSTANTS(:,18) = 5;
CONSTANTS(:,19) = 0.1;
CONSTANTS(:,20) = 0.5;
CONSTANTS(:,21) = 0.1;
CONSTANTS(:,22) = 0.1;
CONSTANTS(:,23) = 0.1;
CONSTANTS(:,24) = 0.5;
CONSTANTS(:,25) = 0.5;
CONSTANTS(:,26) = 0.1;
CONSTANTS(:,27) = 0.1;
CONSTANTS(:,28) = 0.1;
CONSTANTS(:,29) = 0.1;
CONSTANTS(:,30) = 0.15;
CONSTANTS(:,31) = 0.15;
CONSTANTS(:,32) = 0.15;
CONSTANTS(:,33) = 0.1;
CONSTANTS(:,34) = 0.15;
CONSTANTS(:,35) = 0.1;
CONSTANTS(:,36) = 0.15;
CONSTANTS(:,37) = 0.1;
CONSTANTS(:,38) = 0.2;
CONSTANTS(:,39) = 0.1;
CONSTANTS(:,40) = 0.1;
CONSTANTS(:,41) = 0.1;
CONSTANTS(:,42) = 0.02;
CONSTANTS(:,43) = 0.03;
CONSTANTS(:,44) = 15;
CONSTANTS(:,45) = 0.03;
if (isempty(STATES)), warning('Initial values for states not set');, end
end
function [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS)
global algebraicVariableCount;
statesSize = size(STATES);
statesColumnCount = statesSize(2);
if ( statesColumnCount == 1)
STATES = STATES';
ALGEBRAIC = zeros(1, algebraicVariableCount);
utilOnes = 1;
else
statesRowCount = statesSize(1);
ALGEBRAIC = zeros(statesRowCount, algebraicVariableCount);
RATES = zeros(statesRowCount, statesColumnCount);
utilOnes = ones(statesRowCount, 1);
end
ALGEBRAIC(:,5) = CONSTANTS(:,8).*STATES(:,13).*power(CONSTANTS(:,7), 4.00000) - CONSTANTS(:,9).*STATES(:,14);
RATES(:,13) = - ALGEBRAIC(:,5);
ALGEBRAIC(:,6) = CONSTANTS(:,10).*STATES(:,14).*STATES(:,9) - CONSTANTS(:,11).*STATES(:,10);
RATES(:,9) = - ALGEBRAIC(:,6);
RATES(:,12) = - ALGEBRAIC(:,6);
RATES(:,14) = ALGEBRAIC(:,5) - ALGEBRAIC(:,6);
ALGEBRAIC(:,7) = CONSTANTS(:,12).*STATES(:,10).*STATES(:,15) - CONSTANTS(:,13).*STATES(:,18);
RATES(:,18) = ALGEBRAIC(:,7);
ALGEBRAIC(:,8) = CONSTANTS(:,14).*STATES(:,21).*STATES(:,17) - CONSTANTS(:,15).*STATES(:,19);
RATES(:,19) = ALGEBRAIC(:,8);
ALGEBRAIC(:,9) = CONSTANTS(:,16).*STATES(:,5).*STATES(:,21) - CONSTANTS(:,17).*STATES(:,20);
RATES(:,20) = ALGEBRAIC(:,9);
RATES(:,21) = - (ALGEBRAIC(:,8)+ALGEBRAIC(:,9));
ALGEBRAIC(:,10) = CONSTANTS(:,18).*STATES(:,15).*STATES(:,1) - CONSTANTS(:,19).*STATES(:,22);
ALGEBRAIC(:,11) = CONSTANTS(:,20).*STATES(:,22);
RATES(:,1) = ALGEBRAIC(:,11) - ALGEBRAIC(:,10);
RATES(:,22) = ALGEBRAIC(:,10) - ALGEBRAIC(:,11);
ALGEBRAIC(:,13) = CONSTANTS(:,21).*STATES(:,16).*STATES(:,10) - CONSTANTS(:,22).*STATES(:,23);
ALGEBRAIC(:,14) = CONSTANTS(:,23).*STATES(:,23);
RATES(:,23) = ALGEBRAIC(:,13) - ALGEBRAIC(:,14);
ALGEBRAIC(:,4) = CONSTANTS(:,5).*STATES(:,10) - CONSTANTS(:,6).*STATES(:,11);
ALGEBRAIC(:,16) = CONSTANTS(:,36).*STATES(:,6).*STATES(:,11) - CONSTANTS(:,37).*STATES(:,28);
ALGEBRAIC(:,18) = CONSTANTS(:,38).*STATES(:,28);
RATES(:,11) = (ALGEBRAIC(:,4)+ALGEBRAIC(:,18)) - ALGEBRAIC(:,16);
ALGEBRAIC(:,17) = CONSTANTS(:,24).*STATES(:,16).*STATES(:,7) - CONSTANTS(:,25).*STATES(:,24);
ALGEBRAIC(:,19) = CONSTANTS(:,26).*STATES(:,24);
RATES(:,24) = ALGEBRAIC(:,17) - ALGEBRAIC(:,19);
RATES(:,28) = ALGEBRAIC(:,16) - ALGEBRAIC(:,18);
ALGEBRAIC(:,3) = CONSTANTS(:,3).*STATES(:,7) - CONSTANTS(:,4).*STATES(:,8);
ALGEBRAIC(:,22) = CONSTANTS(:,39).*STATES(:,4).*STATES(:,8) - CONSTANTS(:,40).*STATES(:,29);
ALGEBRAIC(:,24) = CONSTANTS(:,41).*STATES(:,29);
RATES(:,8) = (ALGEBRAIC(:,3)+ALGEBRAIC(:,24)) - ALGEBRAIC(:,22);
ALGEBRAIC(:,23) = CONSTANTS(:,27).*STATES(:,17).*STATES(:,10) - CONSTANTS(:,28).*STATES(:,25);
ALGEBRAIC(:,25) = CONSTANTS(:,29).*STATES(:,25);
RATES(:,25) = ALGEBRAIC(:,23) - ALGEBRAIC(:,25);
RATES(:,29) = ALGEBRAIC(:,22) - ALGEBRAIC(:,24);
ALGEBRAIC(:,20) = ALGEBRAIC(:,16)+ALGEBRAIC(:,18);
ALGEBRAIC(:,26) = ALGEBRAIC(:,22)+ALGEBRAIC(:,24);
ALGEBRAIC(:,2) = CONSTANTS(:,2).*STATES(:,6);
RATES(:,6) = ALGEBRAIC(:,26) - (ALGEBRAIC(:,2)+ALGEBRAIC(:,20));
ALGEBRAIC(:,12) = ALGEBRAIC(:,10)+ALGEBRAIC(:,11);
ALGEBRAIC(:,15) = ALGEBRAIC(:,13)+ALGEBRAIC(:,14);
ALGEBRAIC(:,21) = ALGEBRAIC(:,17)+ALGEBRAIC(:,19);
ALGEBRAIC(:,28) = ALGEBRAIC(:,23)+ALGEBRAIC(:,25);
RATES(:,16) = (ALGEBRAIC(:,12)+ALGEBRAIC(:,28)) - (ALGEBRAIC(:,15)+ALGEBRAIC(:,21));
RATES(:,17) = ALGEBRAIC(:,21) - (ALGEBRAIC(:,8)+ALGEBRAIC(:,28));
ALGEBRAIC(:,29) = CONSTANTS(:,42).*STATES(:,4) - CONSTANTS(:,43).*STATES(:,2);
ALGEBRAIC(:,1) = CONSTANTS(:,1).*STATES(:,3);
RATES(:,4) = (ALGEBRAIC(:,1)+ALGEBRAIC(:,20)) - (ALGEBRAIC(:,26)+ALGEBRAIC(:,29));
ALGEBRAIC(:,27) = CONSTANTS(:,30).*STATES(:,5).*STATES(:,10) - CONSTANTS(:,31).*STATES(:,26);
ALGEBRAIC(:,30) = CONSTANTS(:,32).*STATES(:,26);
RATES(:,10) = (ALGEBRAIC(:,6)+ALGEBRAIC(:,14)+ALGEBRAIC(:,25)+ALGEBRAIC(:,30)) - (ALGEBRAIC(:,4)+ALGEBRAIC(:,7)+ALGEBRAIC(:,13)+ALGEBRAIC(:,23)+ALGEBRAIC(:,27));
RATES(:,26) = ALGEBRAIC(:,27) - ALGEBRAIC(:,30);
ALGEBRAIC(:,31) = CONSTANTS(:,45).*STATES(:,2) - (log(2.00000)./CONSTANTS(:,44)).*STATES(:,15);
RATES(:,2) = ALGEBRAIC(:,31) - ALGEBRAIC(:,29);
RATES(:,15) = ALGEBRAIC(:,15) - (ALGEBRAIC(:,7)+ALGEBRAIC(:,12)+ALGEBRAIC(:,31));
ALGEBRAIC(:,33) = CONSTANTS(:,33).*STATES(:,3).*STATES(:,7) - CONSTANTS(:,34).*STATES(:,27);
ALGEBRAIC(:,34) = CONSTANTS(:,35).*STATES(:,27);
RATES(:,7) = (ALGEBRAIC(:,19)+ALGEBRAIC(:,34)) - (ALGEBRAIC(:,3)+ALGEBRAIC(:,17)+ALGEBRAIC(:,33));
RATES(:,27) = ALGEBRAIC(:,33) - ALGEBRAIC(:,34);
ALGEBRAIC(:,32) = ALGEBRAIC(:,27)+ALGEBRAIC(:,30);
ALGEBRAIC(:,35) = ALGEBRAIC(:,33)+ALGEBRAIC(:,34);
RATES(:,3) = ALGEBRAIC(:,32) - (ALGEBRAIC(:,1)+ALGEBRAIC(:,35));
RATES(:,5) = (ALGEBRAIC(:,2)+ALGEBRAIC(:,35)) - (ALGEBRAIC(:,9)+ALGEBRAIC(:,32));
RATES = RATES';
end
% Calculate algebraic variables
function ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI)
statesSize = size(STATES);
statesColumnCount = statesSize(2);
if ( statesColumnCount == 1)
STATES = STATES';
utilOnes = 1;
else
statesRowCount = statesSize(1);
utilOnes = ones(statesRowCount, 1);
end
ALGEBRAIC(:,5) = CONSTANTS(:,8).*STATES(:,13).*power(CONSTANTS(:,7), 4.00000) - CONSTANTS(:,9).*STATES(:,14);
ALGEBRAIC(:,6) = CONSTANTS(:,10).*STATES(:,14).*STATES(:,9) - CONSTANTS(:,11).*STATES(:,10);
ALGEBRAIC(:,7) = CONSTANTS(:,12).*STATES(:,10).*STATES(:,15) - CONSTANTS(:,13).*STATES(:,18);
ALGEBRAIC(:,8) = CONSTANTS(:,14).*STATES(:,21).*STATES(:,17) - CONSTANTS(:,15).*STATES(:,19);
ALGEBRAIC(:,9) = CONSTANTS(:,16).*STATES(:,5).*STATES(:,21) - CONSTANTS(:,17).*STATES(:,20);
ALGEBRAIC(:,10) = CONSTANTS(:,18).*STATES(:,15).*STATES(:,1) - CONSTANTS(:,19).*STATES(:,22);
ALGEBRAIC(:,11) = CONSTANTS(:,20).*STATES(:,22);
ALGEBRAIC(:,13) = CONSTANTS(:,21).*STATES(:,16).*STATES(:,10) - CONSTANTS(:,22).*STATES(:,23);
ALGEBRAIC(:,14) = CONSTANTS(:,23).*STATES(:,23);
ALGEBRAIC(:,4) = CONSTANTS(:,5).*STATES(:,10) - CONSTANTS(:,6).*STATES(:,11);
ALGEBRAIC(:,16) = CONSTANTS(:,36).*STATES(:,6).*STATES(:,11) - CONSTANTS(:,37).*STATES(:,28);
ALGEBRAIC(:,18) = CONSTANTS(:,38).*STATES(:,28);
ALGEBRAIC(:,17) = CONSTANTS(:,24).*STATES(:,16).*STATES(:,7) - CONSTANTS(:,25).*STATES(:,24);
ALGEBRAIC(:,19) = CONSTANTS(:,26).*STATES(:,24);
ALGEBRAIC(:,3) = CONSTANTS(:,3).*STATES(:,7) - CONSTANTS(:,4).*STATES(:,8);
ALGEBRAIC(:,22) = CONSTANTS(:,39).*STATES(:,4).*STATES(:,8) - CONSTANTS(:,40).*STATES(:,29);
ALGEBRAIC(:,24) = CONSTANTS(:,41).*STATES(:,29);
ALGEBRAIC(:,23) = CONSTANTS(:,27).*STATES(:,17).*STATES(:,10) - CONSTANTS(:,28).*STATES(:,25);
ALGEBRAIC(:,25) = CONSTANTS(:,29).*STATES(:,25);
ALGEBRAIC(:,20) = ALGEBRAIC(:,16)+ALGEBRAIC(:,18);
ALGEBRAIC(:,26) = ALGEBRAIC(:,22)+ALGEBRAIC(:,24);
ALGEBRAIC(:,2) = CONSTANTS(:,2).*STATES(:,6);
ALGEBRAIC(:,12) = ALGEBRAIC(:,10)+ALGEBRAIC(:,11);
ALGEBRAIC(:,15) = ALGEBRAIC(:,13)+ALGEBRAIC(:,14);
ALGEBRAIC(:,21) = ALGEBRAIC(:,17)+ALGEBRAIC(:,19);
ALGEBRAIC(:,28) = ALGEBRAIC(:,23)+ALGEBRAIC(:,25);
ALGEBRAIC(:,29) = CONSTANTS(:,42).*STATES(:,4) - CONSTANTS(:,43).*STATES(:,2);
ALGEBRAIC(:,1) = CONSTANTS(:,1).*STATES(:,3);
ALGEBRAIC(:,27) = CONSTANTS(:,30).*STATES(:,5).*STATES(:,10) - CONSTANTS(:,31).*STATES(:,26);
ALGEBRAIC(:,30) = CONSTANTS(:,32).*STATES(:,26);
ALGEBRAIC(:,31) = CONSTANTS(:,45).*STATES(:,2) - (log(2.00000)./CONSTANTS(:,44)).*STATES(:,15);
ALGEBRAIC(:,33) = CONSTANTS(:,33).*STATES(:,3).*STATES(:,7) - CONSTANTS(:,34).*STATES(:,27);
ALGEBRAIC(:,34) = CONSTANTS(:,35).*STATES(:,27);
ALGEBRAIC(:,32) = ALGEBRAIC(:,27)+ALGEBRAIC(:,30);
ALGEBRAIC(:,35) = ALGEBRAIC(:,33)+ALGEBRAIC(:,34);
end
% Pad out or shorten strings to a set length
function strout = strpad(strin)
req_length = 160;
insize = size(strin,2);
if insize > req_length
strout = strin(1:req_length);
else
strout = [strin, blanks(req_length - insize)];
end
end