Generated Code
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C
C There are a total of 28 entries in the algebraic variable array.
C There are a total of 8 entries in each of the rate and state variable arrays.
C There are a total of 36 entries in the constant variable array.
C
C
C CONSTS(1) is RNA_Device1 in component SpeciesInitialConcentrations (nM).
C CONSTS(2) is TF in component SpeciesInitialConcentrations (nM).
C CONSTS(3) is TFS in component SpeciesInitialConcentrations (nM).
C CONSTS(4) is RNA_Device2 in component SpeciesInitialConcentrations (nM).
C CONSTS(5) is IC in component SpeciesInitialConcentrations (nM).
C CONSTS(6) is PhzS in component SpeciesInitialConcentrations (nM).
C CONSTS(7) is PhzM in component SpeciesInitialConcentrations (nM).
C CONSTS(8) is PYO in component SpeciesInitialConcentrations (nM).
C CONSTS(36) is JRNA in component Template_Promoter_Constitutive (nM_per_s).
C ALGBRC(7) is JGain in component RNA_Device1_interface (nM_per_s).
C ALGBRC(1) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(8) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(26) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(13) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(18) is J in component Template_RxR2P1Rev (nM_per_s).
C ALGBRC(28) is JGain in component TF_interface (nM_per_s).
C CONSTS(9) is concentration in component S (nM).
C ALGBRC(27) is JGain in component TFS_interface (nM_per_s).
C ALGBRC(24) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(3) is JRNA in component Template_Promoter_Inductive (nM_per_s).
C ALGBRC(14) is JGain in component RNA_Device2_interface (nM_per_s).
C ALGBRC(9) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(10) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(19) is JGain in component PhzM_interface (nM_per_s).
C ALGBRC(15) is J in component Template_RxR1P1 (nM_per_s).
C CONSTS(10) is concentration in component PCA (nM).
C ALGBRC(5) is J in component Template_RxR1P1MM (nM_per_s).
C ALGBRC(20) is JGain in component IC_interface (nM_per_s).
C ALGBRC(11) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(16) is J in component Template_RxR1P1MM (nM_per_s).
C ALGBRC(12) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(21) is JGain in component PhzS_interface (nM_per_s).
C ALGBRC(17) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(25) is JGain in component PYO_interface (nM_per_s).
C ALGBRC(22) is J in component Template_RxR1P1 (nM_per_s).
C CONSTS(11) is cellVolume in component Chassis_EColi (femtoliter).
C VOI is time in component Time (second).
C CONSTS(12) is k in component ElectrEcoBluDevice1_Promoter (PoPs).
C STATES(1) is concentration in component Template_Species (nM).
C CONSTS(13) is kDecay in component Bioenvironment_Degradation_ElectrEcoBluDevice1RNA (per_s).
C ALGBRC(2) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(14) is k in component ElectrEcoBluDevice1_RBS (RiPs).
C STATES(2) is concentration in component Template_Species (nM).
C CONSTS(15) is kDecay in component Bioenvironment_Degradation_TF (per_s).
C CONSTS(16) is kf in component Bioenvironment_RxR2P1Rev_TFSFormation (per_nM_per_s).
C CONSTS(17) is kb in component Bioenvironment_RxR2P1Rev_TFSFormation (per_s).
C STATES(3) is concentration in component Template_Species (nM).
C CONSTS(18) is kDecay in component Bioenvironment_Degradation_TFS (per_s).
C CONSTS(19) is k in component ElectrEcoBluDevice2_Promoter (PoPs).
C CONSTS(20) is Km in component ElectrEcoBluDevice2_Promoter (nM).
C CONSTS(21) is n in component ElectrEcoBluDevice2_Promoter (dimensionless).
C STATES(4) is concentration in component Template_Species (nM).
C CONSTS(22) is kDecay in component Bioenvironment_Degradation_ElectrEcoBluDevice2RNA (per_s).
C ALGBRC(4) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(23) is k in component ElectrEcoBluDevice2_RBS_PhzM (RiPs).
C ALGBRC(6) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(24) is k in component ElectrEcoBluDevice2_RBS_PhzS (RiPs).
C ALGBRC(23) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(25) is k in component ElectrEcoBluDevice2_RBS_TF (RiPs).
C STATES(5) is concentration in component Template_Species (nM).
C CONSTS(26) is kDecay in component Bioenvironment_Degradation_PhzM (per_s).
C CONSTS(27) is k in component Bioenvironment_RxR1P1MM_ICFormation (per_s).
C CONSTS(28) is Km in component Bioenvironment_RxR1P1MM_ICFormation (nM).
C STATES(6) is concentration in component Template_Species (nM).
C CONSTS(29) is kDecay in component Bioenvironment_Degradation_IC (per_s).
C STATES(7) is concentration in component Template_Species (nM).
C CONSTS(30) is kDecay in component Bioenvironment_Degradation_PhzS (per_s).
C CONSTS(31) is k in component Bioenvironment_RxR1P1MM_PYOFormation (per_s).
C CONSTS(32) is Km in component Bioenvironment_RxR1P1MM_PYOFormation (nM).
C STATES(8) is concentration in component Template_Species (nM).
C CONSTS(33) is kDecay in component Bioenvironment_Degradation_PYO (per_s).
C CONSTS(34) is avogadrosConstant in component Template_Promoter_Constitutive (per_mole).
C CONSTS(35) is avogadrosConstant in component Template_Promoter_Inductive (per_mole).
C RATES(1) is d/dt concentration in component Template_Species (nM).
C RATES(2) is d/dt concentration in component Template_Species (nM).
C RATES(3) is d/dt concentration in component Template_Species (nM).
C RATES(4) is d/dt concentration in component Template_Species (nM).
C RATES(5) is d/dt concentration in component Template_Species (nM).
C RATES(6) is d/dt concentration in component Template_Species (nM).
C RATES(7) is d/dt concentration in component Template_Species (nM).
C RATES(8) is d/dt concentration in component Template_Species (nM).
C
SUBROUTINE initConsts(CONSTS, RATES, STATES)
REAL CONSTS(*), RATES(*), STATES(*)
CONSTS(1) = 0
CONSTS(2) = 8621
CONSTS(3) = 0
CONSTS(4) = 0
CONSTS(5) = 0
CONSTS(6) = 0
CONSTS(7) = 0
CONSTS(8) = 0
CONSTS(9) = 5000
CONSTS(10) = 2
CONSTS(11) = 1
CONSTS(12) = 1.085
CONSTS(13) = 0.05
CONSTS(14) = 1.4
CONSTS(15) = 5.8e-3
CONSTS(16) = 1e3
CONSTS(17) = 4e6
CONSTS(18) = 3.851e-4
CONSTS(19) = 89
CONSTS(20) = 15000
CONSTS(21) = 1
CONSTS(22) = 8e-6
CONSTS(23) = 40
CONSTS(24) = 1
CONSTS(25) = 0.0000028
CONSTS(26) = 8e-1
CONSTS(27) = 0.2
CONSTS(28) = 0.1
CONSTS(29) = 5e-5
CONSTS(30) = 8e-1
CONSTS(31) = 1
CONSTS(32) = 0.1
CONSTS(33) = 5e-1
CONSTS(34) = 6.0221415e23
CONSTS(35) = 6.0221415e23
CONSTS(36) = CONSTS(12)*1.00000e+09/( CONSTS(11)*1.00000e-15*CONSTS(34))
STATES(1) = CONSTS(1)
STATES(2) = CONSTS(2)
STATES(3) = CONSTS(3)
STATES(4) = CONSTS(4)
STATES(5) = CONSTS(7)
STATES(6) = CONSTS(5)
STATES(7) = CONSTS(6)
STATES(8) = CONSTS(8)
RETURN
END
SUBROUTINE computeRates(VOI, CONSTS, RATES, STATES, ALGBRC)
REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
ALGBRC(1) = CONSTS(13)*STATES(1)
ALGBRC(7) = CONSTS(36) - ALGBRC(1)
RATES(1) = ALGBRC(7)
ALGBRC(3) = CONSTS(19)*STATES(3) ** CONSTS(21)/(CONSTS(20) ** CONSTS(21)+STATES(3) ** CONSTS(21))*1.00000e+09/( CONSTS(11)*1.00000e-15*CONSTS(35))
ALGBRC(9) = CONSTS(22)*STATES(4)
ALGBRC(14) = ALGBRC(3) - ALGBRC(9)
RATES(4) = ALGBRC(14)
ALGBRC(4) = 1.00000e+09*CONSTS(23)*STATES(4)*CONSTS(11)*1.00000e-15
ALGBRC(10) = 1.00000e+06*ALGBRC(4)/CONSTS(11)
ALGBRC(15) = CONSTS(26)*STATES(5)
ALGBRC(19) = ALGBRC(10) - ALGBRC(15)
RATES(5) = ALGBRC(19)
ALGBRC(5) = CONSTS(27)*STATES(5)*CONSTS(10)/(CONSTS(10)+CONSTS(28))
ALGBRC(11) = CONSTS(29)*STATES(6)
ALGBRC(16) = CONSTS(31)*STATES(7)*STATES(6)/(STATES(6)+CONSTS(32))
ALGBRC(20) = ALGBRC(5) - ALGBRC(11) - ALGBRC(16)
RATES(6) = ALGBRC(20)
ALGBRC(6) = 1.00000e+09*CONSTS(24)*STATES(4)*CONSTS(11)*1.00000e-15
ALGBRC(12) = 1.00000e+06*ALGBRC(6)/CONSTS(11)
ALGBRC(17) = CONSTS(30)*STATES(7)
ALGBRC(21) = ALGBRC(12) - ALGBRC(17)
RATES(7) = ALGBRC(21)
ALGBRC(22) = CONSTS(33)*STATES(8)
ALGBRC(25) = ALGBRC(16) - ALGBRC(22)
RATES(8) = ALGBRC(25)
ALGBRC(18) = STATES(2)*CONSTS(9)*CONSTS(16) - CONSTS(17)*STATES(3)
ALGBRC(24) = CONSTS(18)*STATES(3)
ALGBRC(27) = ALGBRC(18) - ALGBRC(24)
RATES(3) = ALGBRC(27)
ALGBRC(2) = 1.00000e+09*CONSTS(14)*STATES(1)*CONSTS(11)*1.00000e-15
ALGBRC(8) = 1.00000e+06*ALGBRC(2)/CONSTS(11)
ALGBRC(23) = 1.00000e+09*CONSTS(25)*STATES(4)*CONSTS(11)*1.00000e-15
ALGBRC(26) = 1.00000e+06*ALGBRC(23)/CONSTS(11)
ALGBRC(13) = CONSTS(15)*STATES(2)
ALGBRC(28) = ALGBRC(8)+ALGBRC(26) - ALGBRC(13) - ALGBRC(18)
RATES(2) = ALGBRC(28)
RETURN
END
SUBROUTINE computeVariables(VOI, CONSTS, RATES, STATES, ALGBRC)
REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
ALGBRC(1) = CONSTS(13)*STATES(1)
ALGBRC(7) = CONSTS(36) - ALGBRC(1)
ALGBRC(3) = CONSTS(19)*STATES(3) ** CONSTS(21)/(CONSTS(20) ** CONSTS(21)+STATES(3) ** CONSTS(21))*1.00000e+09/( CONSTS(11)*1.00000e-15*CONSTS(35))
ALGBRC(9) = CONSTS(22)*STATES(4)
ALGBRC(14) = ALGBRC(3) - ALGBRC(9)
ALGBRC(4) = 1.00000e+09*CONSTS(23)*STATES(4)*CONSTS(11)*1.00000e-15
ALGBRC(10) = 1.00000e+06*ALGBRC(4)/CONSTS(11)
ALGBRC(15) = CONSTS(26)*STATES(5)
ALGBRC(19) = ALGBRC(10) - ALGBRC(15)
ALGBRC(5) = CONSTS(27)*STATES(5)*CONSTS(10)/(CONSTS(10)+CONSTS(28))
ALGBRC(11) = CONSTS(29)*STATES(6)
ALGBRC(16) = CONSTS(31)*STATES(7)*STATES(6)/(STATES(6)+CONSTS(32))
ALGBRC(20) = ALGBRC(5) - ALGBRC(11) - ALGBRC(16)
ALGBRC(6) = 1.00000e+09*CONSTS(24)*STATES(4)*CONSTS(11)*1.00000e-15
ALGBRC(12) = 1.00000e+06*ALGBRC(6)/CONSTS(11)
ALGBRC(17) = CONSTS(30)*STATES(7)
ALGBRC(21) = ALGBRC(12) - ALGBRC(17)
ALGBRC(22) = CONSTS(33)*STATES(8)
ALGBRC(25) = ALGBRC(16) - ALGBRC(22)
ALGBRC(18) = STATES(2)*CONSTS(9)*CONSTS(16) - CONSTS(17)*STATES(3)
ALGBRC(24) = CONSTS(18)*STATES(3)
ALGBRC(27) = ALGBRC(18) - ALGBRC(24)
ALGBRC(2) = 1.00000e+09*CONSTS(14)*STATES(1)*CONSTS(11)*1.00000e-15
ALGBRC(8) = 1.00000e+06*ALGBRC(2)/CONSTS(11)
ALGBRC(23) = 1.00000e+09*CONSTS(25)*STATES(4)*CONSTS(11)*1.00000e-15
ALGBRC(26) = 1.00000e+06*ALGBRC(23)/CONSTS(11)
ALGBRC(13) = CONSTS(15)*STATES(2)
ALGBRC(28) = ALGBRC(8)+ALGBRC(26) - ALGBRC(13) - ALGBRC(18)
RETURN
END