C
C There are a total of 26 entries in the algebraic variable array.
C There are a total of 8 entries in each of the rate and state variable arrays.
C There are a total of 35 entries in the constant variable array.
C
C
C CONSTS(1) is RNA_Device1 in component SpeciesInitialConcentrations (nM).
C CONSTS(2) is TF in component SpeciesInitialConcentrations (nM).
C CONSTS(3) is TFS in component SpeciesInitialConcentrations (nM).
C CONSTS(4) is RNA_Device2 in component SpeciesInitialConcentrations (nM).
C CONSTS(5) is IC in component SpeciesInitialConcentrations (nM).
C CONSTS(6) is PhzS in component SpeciesInitialConcentrations (nM).
C CONSTS(7) is PhzM in component SpeciesInitialConcentrations (nM).
C CONSTS(8) is PYO in component SpeciesInitialConcentrations (nM).
C CONSTS(35) is JRNA in component Template_Promoter_Constitutive (nM_per_s).
C ALGBRC(7) is JGain in component RNA_Device1_interface (nM_per_s).
C ALGBRC(1) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(8) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(13) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(18) is J in component Template_RxR2P1Rev (nM_per_s).
C ALGBRC(23) is JGain in component TF_interface (nM_per_s).
C CONSTS(9) is concentration in component S (nM).
C ALGBRC(26) is JGain in component TFS_interface (nM_per_s).
C ALGBRC(24) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(3) is JRNA in component Template_Promoter_Inductive (nM_per_s).
C ALGBRC(14) is JGain in component RNA_Device2_interface (nM_per_s).
C ALGBRC(9) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(10) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(19) is JGain in component PhzM_interface (nM_per_s).
C ALGBRC(15) is J in component Template_RxR1P1 (nM_per_s).
C CONSTS(10) is concentration in component PCA (nM).
C ALGBRC(5) is J in component Template_RxR1P1MM (nM_per_s).
C ALGBRC(20) is JGain in component IC_interface (nM_per_s).
C ALGBRC(11) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(16) is J in component Template_RxR1P1MM (nM_per_s).
C ALGBRC(12) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(21) is JGain in component PhzS_interface (nM_per_s).
C ALGBRC(17) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(25) is JGain in component PYO_interface (nM_per_s).
C ALGBRC(22) is J in component Template_RxR1P1 (nM_per_s).
C CONSTS(11) is cellVolume in component Chassis_EColi (femtoliter).
C VOI is time in component Time (second).
C CONSTS(12) is k in component ElectrEcoBluDevice1_Promoter (PoPs).
C STATES(1) is concentration in component Template_Species (nM).
C CONSTS(13) is kDecay in component Bioenvironment_Degradation_ElectrEcoBluDevice1RNA (per_s).
C ALGBRC(2) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(14) is k in component ElectrEcoBluDevice1_RBS (RiPs).
C STATES(2) is concentration in component Template_Species (nM).
C CONSTS(15) is kDecay in component Bioenvironment_Degradation_TF (per_s).
C CONSTS(16) is kf in component Bioenvironment_RxR2P1Rev_TFSFormation (per_nM_per_s).
C CONSTS(17) is kb in component Bioenvironment_RxR2P1Rev_TFSFormation (per_s).
C STATES(3) is concentration in component Template_Species (nM).
C CONSTS(18) is kDecay in component Bioenvironment_Degradation_TFS (per_s).
C CONSTS(19) is k in component ElectrEcoBluDevice2_Promoter (PoPs).
C CONSTS(20) is Km in component ElectrEcoBluDevice2_Promoter (nM).
C CONSTS(21) is n in component ElectrEcoBluDevice2_Promoter (dimensionless).
C STATES(4) is concentration in component Template_Species (nM).
C CONSTS(22) is kDecay in component Bioenvironment_Degradation_ElectrEcoBluDevice2RNA (per_s).
C ALGBRC(4) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(23) is k in component ElectrEcoBluDevice2_RBS_PhzM (RiPs).
C ALGBRC(6) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(24) is k in component ElectrEcoBluDevice2_RBS_PhzS (RiPs).
C STATES(5) is concentration in component Template_Species (nM).
C CONSTS(25) is kDecay in component Bioenvironment_Degradation_PhzM (per_s).
C CONSTS(26) is k in component Bioenvironment_RxR1P1MM_ICFormation (per_s).
C CONSTS(27) is Km in component Bioenvironment_RxR1P1MM_ICFormation (nM).
C STATES(6) is concentration in component Template_Species (nM).
C CONSTS(28) is kDecay in component Bioenvironment_Degradation_IC (per_s).
C STATES(7) is concentration in component Template_Species (nM).
C CONSTS(29) is kDecay in component Bioenvironment_Degradation_PhzS (per_s).
C CONSTS(30) is k in component Bioenvironment_RxR1P1MM_PYOFormation (per_s).
C CONSTS(31) is Km in component Bioenvironment_RxR1P1MM_PYOFormation (nM).
C STATES(8) is concentration in component Template_Species (nM).
C CONSTS(32) is kDecay in component Bioenvironment_Degradation_PYO (per_s).
C CONSTS(33) is avogadrosConstant in component Template_Promoter_Constitutive (per_mole).
C CONSTS(34) is avogadrosConstant in component Template_Promoter_Inductive (per_mole).
C RATES(1) is d/dt concentration in component Template_Species (nM).
C RATES(2) is d/dt concentration in component Template_Species (nM).
C RATES(3) is d/dt concentration in component Template_Species (nM).
C RATES(4) is d/dt concentration in component Template_Species (nM).
C RATES(5) is d/dt concentration in component Template_Species (nM).
C RATES(6) is d/dt concentration in component Template_Species (nM).
C RATES(7) is d/dt concentration in component Template_Species (nM).
C RATES(8) is d/dt concentration in component Template_Species (nM).
C
      SUBROUTINE initConsts(CONSTS, RATES, STATES)
      REAL CONSTS(*), RATES(*), STATES(*)
      CONSTS(1) = 0
      CONSTS(2) = 8621
      CONSTS(3) = 0
      CONSTS(4) = 0
      CONSTS(5) = 0
      CONSTS(6) = 0
      CONSTS(7) = 0
      CONSTS(8) = 0
      CONSTS(9) = 5000
      CONSTS(10) = 2
      CONSTS(11) = 1
      CONSTS(12) = 1.085
      CONSTS(13) = 0.05
      CONSTS(14) = 1.4
      CONSTS(15) = 5.8e-3
      CONSTS(16) = 1e3
      CONSTS(17) = 4e6
      CONSTS(18) = 3.851e-4
      CONSTS(19) = 89
      CONSTS(20) = 15000
      CONSTS(21) = 1
      CONSTS(22) = 8e-6
      CONSTS(23) = 40
      CONSTS(24) = 1
      CONSTS(25) = 8e-1
      CONSTS(26) = 0.2
      CONSTS(27) = 0.1
      CONSTS(28) = 5e-5
      CONSTS(29) = 8e-1
      CONSTS(30) = 1
      CONSTS(31) = 0.1
      CONSTS(32) = 5e-1
      CONSTS(33) = 6.0221415e23
      CONSTS(34) = 6.0221415e23
      CONSTS(35) =  CONSTS(12)*1.00000e+09/( CONSTS(11)*1.00000e-15*CONSTS(33))
      STATES(1) = CONSTS(1)
      STATES(2) = CONSTS(2)
      STATES(3) = CONSTS(3)
      STATES(4) = CONSTS(4)
      STATES(5) = CONSTS(7)
      STATES(6) = CONSTS(5)
      STATES(7) = CONSTS(6)
      STATES(8) = CONSTS(8)
      RETURN
      END
      SUBROUTINE computeRates(VOI, CONSTS,  RATES, STATES, ALGBRC)
      REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
      ALGBRC(1) =  CONSTS(13)*STATES(1)
      ALGBRC(7) = CONSTS(35) - ALGBRC(1)
      RATES(1) = ALGBRC(7)
      ALGBRC(3) =   CONSTS(19)*STATES(3) ** CONSTS(21)/(CONSTS(20) ** CONSTS(21)+STATES(3) ** CONSTS(21))*1.00000e+09/( CONSTS(11)*1.00000e-15*CONSTS(34))
      ALGBRC(9) =  CONSTS(22)*STATES(4)
      ALGBRC(14) = ALGBRC(3) - ALGBRC(9)
      RATES(4) = ALGBRC(14)
      ALGBRC(4) =  1.00000e+09*CONSTS(23)*STATES(4)*CONSTS(11)*1.00000e-15
      ALGBRC(10) =  1.00000e+06*ALGBRC(4)/CONSTS(11)
      ALGBRC(15) =  CONSTS(25)*STATES(5)
      ALGBRC(19) = ALGBRC(10) - ALGBRC(15)
      RATES(5) = ALGBRC(19)
      ALGBRC(5) =  CONSTS(26)*STATES(5)*CONSTS(10)/(CONSTS(10)+CONSTS(27))
      ALGBRC(11) =  CONSTS(28)*STATES(6)
      ALGBRC(16) =  CONSTS(30)*STATES(7)*STATES(6)/(STATES(6)+CONSTS(31))
      ALGBRC(20) = ALGBRC(5) - ALGBRC(11) - ALGBRC(16)
      RATES(6) = ALGBRC(20)
      ALGBRC(6) =  1.00000e+09*CONSTS(24)*STATES(4)*CONSTS(11)*1.00000e-15
      ALGBRC(12) =  1.00000e+06*ALGBRC(6)/CONSTS(11)
      ALGBRC(17) =  CONSTS(29)*STATES(7)
      ALGBRC(21) = ALGBRC(12) - ALGBRC(17)
      RATES(7) = ALGBRC(21)
      ALGBRC(2) =  1.00000e+09*CONSTS(14)*STATES(1)*CONSTS(11)*1.00000e-15
      ALGBRC(8) =  1.00000e+06*ALGBRC(2)/CONSTS(11)
      ALGBRC(13) =  CONSTS(15)*STATES(2)
      ALGBRC(18) =  STATES(2)*CONSTS(9)*CONSTS(16) -  CONSTS(17)*STATES(3)
      ALGBRC(23) = ALGBRC(8) - ALGBRC(13) - ALGBRC(18)
      RATES(2) = ALGBRC(23)
      ALGBRC(22) =  CONSTS(32)*STATES(8)
      ALGBRC(25) = ALGBRC(16) - ALGBRC(22)
      RATES(8) = ALGBRC(25)
      ALGBRC(24) =  CONSTS(18)*STATES(3)
      ALGBRC(26) = ALGBRC(18) - ALGBRC(24)
      RATES(3) = ALGBRC(26)
      RETURN
      END
      SUBROUTINE computeVariables(VOI, CONSTS, RATES, STATES, ALGBRC)
      REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
      ALGBRC(1) =  CONSTS(13)*STATES(1)
      ALGBRC(7) = CONSTS(35) - ALGBRC(1)
      ALGBRC(3) =   CONSTS(19)*STATES(3) ** CONSTS(21)/(CONSTS(20) ** CONSTS(21)+STATES(3) ** CONSTS(21))*1.00000e+09/( CONSTS(11)*1.00000e-15*CONSTS(34))
      ALGBRC(9) =  CONSTS(22)*STATES(4)
      ALGBRC(14) = ALGBRC(3) - ALGBRC(9)
      ALGBRC(4) =  1.00000e+09*CONSTS(23)*STATES(4)*CONSTS(11)*1.00000e-15
      ALGBRC(10) =  1.00000e+06*ALGBRC(4)/CONSTS(11)
      ALGBRC(15) =  CONSTS(25)*STATES(5)
      ALGBRC(19) = ALGBRC(10) - ALGBRC(15)
      ALGBRC(5) =  CONSTS(26)*STATES(5)*CONSTS(10)/(CONSTS(10)+CONSTS(27))
      ALGBRC(11) =  CONSTS(28)*STATES(6)
      ALGBRC(16) =  CONSTS(30)*STATES(7)*STATES(6)/(STATES(6)+CONSTS(31))
      ALGBRC(20) = ALGBRC(5) - ALGBRC(11) - ALGBRC(16)
      ALGBRC(6) =  1.00000e+09*CONSTS(24)*STATES(4)*CONSTS(11)*1.00000e-15
      ALGBRC(12) =  1.00000e+06*ALGBRC(6)/CONSTS(11)
      ALGBRC(17) =  CONSTS(29)*STATES(7)
      ALGBRC(21) = ALGBRC(12) - ALGBRC(17)
      ALGBRC(2) =  1.00000e+09*CONSTS(14)*STATES(1)*CONSTS(11)*1.00000e-15
      ALGBRC(8) =  1.00000e+06*ALGBRC(2)/CONSTS(11)
      ALGBRC(13) =  CONSTS(15)*STATES(2)
      ALGBRC(18) =  STATES(2)*CONSTS(9)*CONSTS(16) -  CONSTS(17)*STATES(3)
      ALGBRC(23) = ALGBRC(8) - ALGBRC(13) - ALGBRC(18)
      ALGBRC(22) =  CONSTS(32)*STATES(8)
      ALGBRC(25) = ALGBRC(16) - ALGBRC(22)
      ALGBRC(24) =  CONSTS(18)*STATES(3)
      ALGBRC(26) = ALGBRC(18) - ALGBRC(24)
      RETURN
      END