C
C There are a total of 25 entries in the algebraic variable array.
C There are a total of 7 entries in each of the rate and state variable arrays.
C There are a total of 30 entries in the constant variable array.
C
C
C CONSTS(1) is concentration in component Subtilin (nM).
C CONSTS(2) is RNA1 in component SpeciesInitialConcentrations (nM).
C CONSTS(3) is RNA2 in component SpeciesInitialConcentrations (nM).
C CONSTS(4) is spaK in component SpeciesInitialConcentrations (nM).
C CONSTS(5) is spaR in component SpeciesInitialConcentrations (nM).
C CONSTS(6) is spaKactive in component SpeciesInitialConcentrations (nM).
C CONSTS(7) is spaRactive in component SpeciesInitialConcentrations (nM).
C CONSTS(8) is GFP in component SpeciesInitialConcentrations (nM).
C CONSTS(30) is JRNA in component Template_Promoter_Constitutive (nM_per_s).
C ALGBRC(5) is JGain in component RNA1_interface (nM_per_s).
C ALGBRC(1) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(12) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(19) is J in component Template_RxR2P1 (nM_per_s).
C ALGBRC(16) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(14) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(15) is J in component Template_RxR2P1 (nM_per_s).
C ALGBRC(20) is JGain in component spaK_interface (nM_per_s).
C ALGBRC(17) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(21) is JGain in component spaKactive_interface (nM_per_s).
C ALGBRC(6) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(18) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(22) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(23) is JGain in component spaR_interface (nM_per_s).
C ALGBRC(24) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(25) is JGain in component spaRactive_interface (nM_per_s).
C ALGBRC(3) is JRNA in component Template_Promoter_Inductive (nM_per_s).
C ALGBRC(10) is JGain in component RNA2_interface (nM_per_s).
C ALGBRC(7) is J in component Template_RxR1P1 (nM_per_s).
C ALGBRC(8) is J in component Template_ProteinCDS (nM_per_s).
C ALGBRC(13) is JGain in component GFP_interface (nM_per_s).
C ALGBRC(11) is J in component Template_RxR1P1 (nM_per_s).
C CONSTS(9) is cellVolume in component Chassis_Bacillus (femtoliter).
C VOI is time in component Time (second).
C CONSTS(10) is k in component Bugbuster_Promoter1 (PoPs).
C STATES(1) is concentration in component Template_Species (nM).
C CONSTS(11) is kDecay in component Bioenvironment_Degradation_BugbusterRNA1 (per_s).
C ALGBRC(2) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(12) is k in component Bugbuster_RBS_spaR (RiPs).
C ALGBRC(9) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(13) is k in component Bugbuster_RBS_spaK (RiPs).
C STATES(2) is concentration in component Template_Species (nM).
C CONSTS(14) is kDecay in component Bioenvironment_Degradation_spaK (per_s).
C CONSTS(15) is k in component Bioenvironment_RxR2P1_spaKActivation (per_nM_per_s).
C STATES(3) is concentration in component Template_Species (nM).
C CONSTS(16) is k in component Bioenvironment_Dephosphorylation_spaKactive (per_s).
C CONSTS(17) is kDecay in component Bioenvironment_Degradation_spaKactive (per_s).
C STATES(4) is concentration in component Template_Species (nM).
C CONSTS(18) is kDecay in component Bioenvironment_Degradation_spaR (per_s).
C CONSTS(19) is k in component Bioenvironment_RxR2P1_spaRActivation (per_nM_per_s).
C STATES(5) is concentration in component Template_Species (nM).
C CONSTS(20) is k in component Bioenvironment_Dephosphorylation_spaRactive (per_s).
C CONSTS(21) is kDecay in component Bioenvironment_Degradation_spaRactive (per_s).
C CONSTS(22) is k in component Bugbuster_Promoter2 (PoPs).
C CONSTS(23) is n in component Bugbuster_Promoter2 (dimensionless).
C CONSTS(24) is Km in component Bugbuster_Promoter2 (nM).
C STATES(6) is concentration in component Template_Species (nM).
C CONSTS(25) is kDecay in component Bioenvironment_Degradation_BugbusterRNA2 (per_s).
C ALGBRC(4) is RNARiPs in component Template_RBS (RiPsInAttoMoles).
C CONSTS(26) is k in component Bugbuster_RBS_GFP (RiPs).
C STATES(7) is concentration in component Template_Species (nM).
C CONSTS(27) is kDecay in component Bioenvironment_Degradation_GFP (per_s).
C CONSTS(28) is avogadrosConstant in component Template_Promoter_Constitutive (per_mole).
C CONSTS(29) is avogadrosConstant in component Template_Promoter_Inductive (per_mole).
C RATES(1) is d/dt concentration in component Template_Species (nM).
C RATES(2) is d/dt concentration in component Template_Species (nM).
C RATES(3) is d/dt concentration in component Template_Species (nM).
C RATES(4) is d/dt concentration in component Template_Species (nM).
C RATES(5) is d/dt concentration in component Template_Species (nM).
C RATES(6) is d/dt concentration in component Template_Species (nM).
C RATES(7) is d/dt concentration in component Template_Species (nM).
C
      SUBROUTINE initConsts(CONSTS, RATES, STATES)
      REAL CONSTS(*), RATES(*), STATES(*)
      CONSTS(1) = 1000
      CONSTS(2) = 0
      CONSTS(3) = 0
      CONSTS(4) = 0
      CONSTS(5) = 0
      CONSTS(6) = 0
      CONSTS(7) = 0
      CONSTS(8) = 0
      CONSTS(9) = 1
      CONSTS(10) = 0.04
      CONSTS(11) = 0.0058
      CONSTS(12) = 0.1
      CONSTS(13) = 0.1818
      CONSTS(14) = 0.0012
      CONSTS(15) = 1e-4
      CONSTS(16) = 0.1
      CONSTS(17) = 0.0012
      CONSTS(18) = 0.0012
      CONSTS(19) = 1e-4
      CONSTS(20) = 0.1
      CONSTS(21) = 0.0012
      CONSTS(22) = 0.04
      CONSTS(23) = 2
      CONSTS(24) = 320
      CONSTS(25) = 0.0058
      CONSTS(26) = 0.145
      CONSTS(27) = 0.0012
      CONSTS(28) = 6.0221415e23
      CONSTS(29) = 6.0221415e23
      CONSTS(30) =  CONSTS(10)*1.00000e+09/( CONSTS(9)*1.00000e-15*CONSTS(28))
      STATES(1) = CONSTS(2)
      STATES(2) = CONSTS(4)
      STATES(3) = CONSTS(6)
      STATES(4) = CONSTS(5)
      STATES(5) = CONSTS(7)
      STATES(6) = CONSTS(3)
      STATES(7) = CONSTS(8)
      RETURN
      END
      SUBROUTINE computeRates(VOI, CONSTS,  RATES, STATES, ALGBRC)
      REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
      ALGBRC(1) =  CONSTS(11)*STATES(1)
      ALGBRC(5) = CONSTS(30) - ALGBRC(1)
      RATES(1) = ALGBRC(5)
      ALGBRC(3) =   CONSTS(22)*STATES(5) ** CONSTS(23)/(CONSTS(24) ** CONSTS(23)+STATES(5) ** CONSTS(23))*1.00000e+09/( CONSTS(9)*1.00000e-15*CONSTS(29))
      ALGBRC(7) =  CONSTS(25)*STATES(6)
      ALGBRC(10) = ALGBRC(3) - ALGBRC(7)
      RATES(6) = ALGBRC(10)
      ALGBRC(4) =  1.00000e+09*CONSTS(26)*STATES(6)*CONSTS(9)*1.00000e-15
      ALGBRC(8) =  1.00000e+06*ALGBRC(4)/CONSTS(9)
      ALGBRC(11) =  CONSTS(27)*STATES(7)
      ALGBRC(13) = ALGBRC(8) - ALGBRC(11)
      RATES(7) = ALGBRC(13)
      ALGBRC(9) =  1.00000e+09*CONSTS(13)*STATES(1)*CONSTS(9)*1.00000e-15
      ALGBRC(12) =  1.00000e+06*ALGBRC(9)/CONSTS(9)
      ALGBRC(19) =  STATES(3)*STATES(4)*CONSTS(19)
      ALGBRC(16) =  CONSTS(16)*STATES(3)
      ALGBRC(14) =  CONSTS(14)*STATES(2)
      ALGBRC(15) =  CONSTS(1)*STATES(2)*CONSTS(15)
      ALGBRC(20) = ALGBRC(12)+ALGBRC(19)+ALGBRC(16) - (ALGBRC(15)+ALGBRC(14))
      RATES(2) = ALGBRC(20)
      ALGBRC(17) =  CONSTS(17)*STATES(3)
      ALGBRC(21) = ALGBRC(15) - ALGBRC(17)+ALGBRC(16)+ALGBRC(19)
      RATES(3) = ALGBRC(21)
      ALGBRC(2) =  1.00000e+09*CONSTS(12)*STATES(1)*CONSTS(9)*1.00000e-15
      ALGBRC(6) =  1.00000e+06*ALGBRC(2)/CONSTS(9)
      ALGBRC(18) =  CONSTS(18)*STATES(4)
      ALGBRC(22) =  CONSTS(20)*STATES(5)
      ALGBRC(23) = ALGBRC(6)+ALGBRC(22) - (ALGBRC(18)+ALGBRC(19))
      RATES(4) = ALGBRC(23)
      ALGBRC(24) =  CONSTS(21)*STATES(5)
      ALGBRC(25) = ALGBRC(19) - ALGBRC(24)+ALGBRC(22)
      RATES(5) = ALGBRC(25)
      RETURN
      END
      SUBROUTINE computeVariables(VOI, CONSTS, RATES, STATES, ALGBRC)
      REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
      ALGBRC(1) =  CONSTS(11)*STATES(1)
      ALGBRC(5) = CONSTS(30) - ALGBRC(1)
      ALGBRC(3) =   CONSTS(22)*STATES(5) ** CONSTS(23)/(CONSTS(24) ** CONSTS(23)+STATES(5) ** CONSTS(23))*1.00000e+09/( CONSTS(9)*1.00000e-15*CONSTS(29))
      ALGBRC(7) =  CONSTS(25)*STATES(6)
      ALGBRC(10) = ALGBRC(3) - ALGBRC(7)
      ALGBRC(4) =  1.00000e+09*CONSTS(26)*STATES(6)*CONSTS(9)*1.00000e-15
      ALGBRC(8) =  1.00000e+06*ALGBRC(4)/CONSTS(9)
      ALGBRC(11) =  CONSTS(27)*STATES(7)
      ALGBRC(13) = ALGBRC(8) - ALGBRC(11)
      ALGBRC(9) =  1.00000e+09*CONSTS(13)*STATES(1)*CONSTS(9)*1.00000e-15
      ALGBRC(12) =  1.00000e+06*ALGBRC(9)/CONSTS(9)
      ALGBRC(19) =  STATES(3)*STATES(4)*CONSTS(19)
      ALGBRC(16) =  CONSTS(16)*STATES(3)
      ALGBRC(14) =  CONSTS(14)*STATES(2)
      ALGBRC(15) =  CONSTS(1)*STATES(2)*CONSTS(15)
      ALGBRC(20) = ALGBRC(12)+ALGBRC(19)+ALGBRC(16) - (ALGBRC(15)+ALGBRC(14))
      ALGBRC(17) =  CONSTS(17)*STATES(3)
      ALGBRC(21) = ALGBRC(15) - ALGBRC(17)+ALGBRC(16)+ALGBRC(19)
      ALGBRC(2) =  1.00000e+09*CONSTS(12)*STATES(1)*CONSTS(9)*1.00000e-15
      ALGBRC(6) =  1.00000e+06*ALGBRC(2)/CONSTS(9)
      ALGBRC(18) =  CONSTS(18)*STATES(4)
      ALGBRC(22) =  CONSTS(20)*STATES(5)
      ALGBRC(23) = ALGBRC(6)+ALGBRC(22) - (ALGBRC(18)+ALGBRC(19))
      ALGBRC(24) =  CONSTS(21)*STATES(5)
      ALGBRC(25) = ALGBRC(19) - ALGBRC(24)+ALGBRC(22)
      RETURN
      END