Generated Code
The following is python code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
# Size of variable arrays:
sizeAlgebraic = 108
sizeStates = 26
sizeConstants = 80
from math import *
from numpy import *
def createLegends():
legend_states = [""] * sizeStates
legend_rates = [""] * sizeStates
legend_algebraic = [""] * sizeAlgebraic
legend_voi = ""
legend_constants = [""] * sizeConstants
legend_voi = "time in component Environment (ms)"
legend_constants[0] = "R in component Environment (J_per_moleK)"
legend_constants[1] = "T in component Environment (kelvin)"
legend_constants[2] = "F in component Environment (coulomb_per_mmole)"
legend_constants[3] = "K_o in component Environment (mM)"
legend_constants[4] = "Ca_o in component Environment (mM)"
legend_constants[5] = "Na_o in component Environment (mM)"
legend_constants[75] = "FonRT in component Environment (per_mV)"
legend_states[0] = "V in component cell (mV)"
legend_algebraic[49] = "xik1 in component IK1 (nA_per_nF)"
legend_algebraic[60] = "xito in component Ito (nA_per_nF)"
legend_algebraic[65] = "xiNaK in component INaK (nA_per_nF)"
legend_constants[6] = "wca in component cell (mV_per_uM)"
legend_algebraic[102] = "xiNaCa in component INaCa (nA_per_nF)"
legend_algebraic[93] = "xica in component ICaL (nA_per_nF)"
legend_algebraic[107] = "Itotal in component cell (nA_per_nF)"
legend_algebraic[106] = "xina in component INa (nA_per_nF)"
legend_algebraic[51] = "xikr in component IKr (nA_per_nF)"
legend_algebraic[104] = "xiks in component IKs (nA_per_nF)"
legend_algebraic[10] = "i_Stim in component cell (nA_per_nF)"
legend_constants[7] = "stim_offset in component cell (ms)"
legend_constants[8] = "stim_period in component cell (ms)"
legend_constants[9] = "stim_duration in component cell (ms)"
legend_constants[10] = "stim_amplitude in component cell (nA_per_nF)"
legend_algebraic[3] = "past in component cell (ms)"
legend_algebraic[105] = "ena in component reversal_potentials (mV)"
legend_states[1] = "xm in component INa (dimensionless)"
legend_states[2] = "xh in component INa (dimensionless)"
legend_states[3] = "xj in component INa (dimensionless)"
legend_constants[11] = "gna in component INa (uS_per_nF)"
legend_algebraic[0] = "am in component INa (per_ms)"
legend_algebraic[7] = "bm in component INa (per_ms)"
legend_algebraic[1] = "ah in component INa (per_ms)"
legend_algebraic[8] = "bh in component INa (per_ms)"
legend_algebraic[2] = "aj in component INa (per_ms)"
legend_algebraic[9] = "bj in component INa (per_ms)"
legend_states[4] = "Ca_dyad in component Ca (uM)"
legend_algebraic[88] = "csm in component Ca (mM)"
legend_states[5] = "c1 in component ICaL (dimensionless)"
legend_states[6] = "c2 in component ICaL (dimensionless)"
legend_states[7] = "xi1ca in component ICaL (dimensionless)"
legend_states[8] = "xi1ba in component ICaL (dimensionless)"
legend_states[9] = "xi2ca in component ICaL (dimensionless)"
legend_states[10] = "xi2ba in component ICaL (dimensionless)"
legend_constants[12] = "gca in component ICaL (mmole_per_coulomb_cm)"
legend_constants[13] = "pca in component ICaL (cm_per_s)"
legend_algebraic[14] = "za in component ICaL (dimensionless)"
legend_algebraic[18] = "poinf in component ICaL (dimensionless)"
legend_algebraic[26] = "fca in component ICaL (dimensionless)"
legend_constants[14] = "vth in component ICaL (mV)"
legend_constants[15] = "s6 in component ICaL (mV)"
legend_constants[16] = "vx in component ICaL (mV)"
legend_constants[17] = "sx in component ICaL (mV)"
legend_constants[18] = "vy in component ICaL (mV)"
legend_constants[19] = "sy in component ICaL (mV)"
legend_constants[20] = "vyr in component ICaL (mV)"
legend_constants[21] = "syr in component ICaL (mV)"
legend_constants[22] = "cat in component ICaL (uM)"
legend_constants[23] = "cpt in component ICaL (uM)"
legend_algebraic[23] = "alpha in component ICaL (per_ms)"
legend_algebraic[25] = "beta in component ICaL (per_ms)"
legend_algebraic[28] = "k1 in component ICaL (per_ms)"
legend_constants[24] = "k2 in component ICaL (per_ms)"
legend_constants[25] = "k1t in component ICaL (per_ms)"
legend_constants[26] = "k2t in component ICaL (per_ms)"
legend_algebraic[31] = "k3 in component ICaL (per_ms)"
legend_algebraic[32] = "k3t in component ICaL (per_ms)"
legend_algebraic[39] = "k6 in component ICaL (per_ms)"
legend_algebraic[40] = "k5 in component ICaL (per_ms)"
legend_algebraic[41] = "k6t in component ICaL (per_ms)"
legend_algebraic[42] = "k5t in component ICaL (per_ms)"
legend_algebraic[43] = "k4 in component ICaL (per_ms)"
legend_algebraic[44] = "k4t in component ICaL (per_ms)"
legend_constants[27] = "r1 in component ICaL (per_ms)"
legend_constants[28] = "r2 in component ICaL (per_ms)"
legend_algebraic[27] = "s1 in component ICaL (per_ms)"
legend_constants[29] = "s1t in component ICaL (per_ms)"
legend_algebraic[29] = "s2 in component ICaL (per_ms)"
legend_constants[76] = "s2t in component ICaL (per_ms)"
legend_algebraic[34] = "recov in component ICaL (ms)"
legend_constants[30] = "tca in component ICaL (ms)"
legend_algebraic[35] = "tau_ca in component ICaL (ms)"
legend_algebraic[36] = "tauca in component ICaL (ms)"
legend_algebraic[37] = "tauba in component ICaL (ms)"
legend_constants[31] = "taupo in component ICaL (ms)"
legend_constants[32] = "tau3 in component ICaL (ms)"
legend_algebraic[33] = "Pr in component ICaL (dimensionless)"
legend_algebraic[38] = "Ps in component ICaL (dimensionless)"
legend_algebraic[30] = "poi in component ICaL (dimensionless)"
legend_algebraic[45] = "po in component ICaL (dimensionless)"
legend_algebraic[89] = "rxa in component ICaL (mA_per_cm2)"
legend_algebraic[90] = "jca in component ICaL (uM_per_ms)"
legend_constants[79] = "ek in component reversal_potentials (mV)"
legend_constants[33] = "gkix in component IK1 (uS_per_nF)"
legend_algebraic[46] = "aki in component IK1 (per_ms)"
legend_algebraic[47] = "bki in component IK1 (per_ms)"
legend_algebraic[48] = "xkin in component IK1 (dimensionless)"
legend_states[11] = "xr in component IKr (dimensionless)"
legend_constants[34] = "gkr in component IKr (uS_per_nF)"
legend_algebraic[4] = "xkrv1 in component IKr (per_ms)"
legend_algebraic[11] = "xkrv2 in component IKr (per_ms)"
legend_algebraic[15] = "taukr in component IKr (ms)"
legend_algebraic[19] = "xkrinf in component IKr (dimensionless)"
legend_algebraic[50] = "rg in component IKr (dimensionless)"
legend_states[12] = "Ca_i in component Ca (uM)"
legend_constants[35] = "gks in component IKs (uS_per_nF)"
legend_states[13] = "xs1 in component IKs (dimensionless)"
legend_states[14] = "xs2 in component IKs (dimensionless)"
legend_algebraic[103] = "eks in component reversal_potentials (mV)"
legend_algebraic[5] = "xs1ss in component IKs (dimensionless)"
legend_algebraic[12] = "xs2ss in component IKs (dimensionless)"
legend_algebraic[16] = "tauxs1 in component IKs (ms)"
legend_algebraic[20] = "tauxs2 in component IKs (ms)"
legend_algebraic[52] = "gksx in component IKs (dimensionless)"
legend_algebraic[56] = "xitos in component Ito (nA_per_nF)"
legend_algebraic[58] = "xitof in component Ito (nA_per_nF)"
legend_states[15] = "xtos in component Ito (dimensionless)"
legend_states[16] = "ytos in component Ito (dimensionless)"
legend_states[17] = "xtof in component Ito (dimensionless)"
legend_states[18] = "ytof in component Ito (dimensionless)"
legend_constants[36] = "gtos in component Ito (uS_per_nF)"
legend_constants[37] = "gtof in component Ito (uS_per_nF)"
legend_algebraic[6] = "rt1 in component Ito (dimensionless)"
legend_algebraic[53] = "rt2 in component Ito (dimensionless)"
legend_algebraic[55] = "rt3 in component Ito (dimensionless)"
legend_algebraic[13] = "rt4 in component Ito (dimensionless)"
legend_algebraic[57] = "rt5 in component Ito (dimensionless)"
legend_algebraic[17] = "xtos_inf in component Ito (dimensionless)"
legend_algebraic[59] = "ytos_inf in component Ito (dimensionless)"
legend_algebraic[21] = "xtof_inf in component Ito (dimensionless)"
legend_algebraic[61] = "ytof_inf in component Ito (dimensionless)"
legend_algebraic[54] = "rs_inf in component Ito (dimensionless)"
legend_algebraic[22] = "txs in component Ito (ms)"
legend_algebraic[62] = "tys in component Ito (ms)"
legend_algebraic[24] = "txf in component Ito (ms)"
legend_algebraic[64] = "tyf in component Ito (ms)"
legend_states[19] = "Na_i in component Na (mM)"
legend_constants[38] = "gNaK in component INaK (nA_per_nF)"
legend_constants[39] = "xkmko in component INaK (mM)"
legend_constants[40] = "xkmnai in component INaK (mM)"
legend_constants[77] = "sigma in component INaK (dimensionless)"
legend_algebraic[63] = "fNaK in component INaK (dimensionless)"
legend_states[20] = "Ca_submem in component Ca (uM)"
legend_constants[41] = "gNaCa in component INaCa (uM_per_ms)"
legend_algebraic[67] = "aloss in component INaCa (dimensionless)"
legend_algebraic[97] = "yz1 in component INaCa (mM4)"
legend_algebraic[98] = "yz2 in component INaCa (mM4)"
legend_algebraic[68] = "yz3 in component INaCa (mM4)"
legend_algebraic[99] = "yz4 in component INaCa (mM4)"
legend_algebraic[95] = "zw3 in component INaCa (mM4)"
legend_algebraic[66] = "zw4 in component INaCa (dimensionless)"
legend_algebraic[100] = "zw8 in component INaCa (mM4)"
legend_algebraic[101] = "jNaCa in component INaCa (uM_per_ms)"
legend_constants[42] = "xkdna in component INaCa (uM)"
legend_constants[43] = "xmcao in component INaCa (mM)"
legend_constants[44] = "xmnao in component INaCa (mM)"
legend_constants[45] = "xmnai in component INaCa (mM)"
legend_constants[46] = "xmcai in component INaCa (mM)"
legend_states[21] = "Ca_NSR in component Ca (uM)"
legend_algebraic[87] = "dCa_JSR in component Ca (uM_per_ms)"
legend_constants[47] = "cstar in component Irel (uM)"
legend_states[22] = "Ca_JSR in component Irel (uM)"
legend_constants[48] = "gryr in component Irel (per_ms)"
legend_constants[49] = "gbarsr in component Irel (dimensionless)"
legend_constants[50] = "gdyad in component Irel (mmole_per_coulomb_cm)"
legend_constants[51] = "ax in component Irel (per_mV)"
legend_constants[52] = "ay in component Irel (per_mV)"
legend_constants[53] = "av in component Irel (per_ms)"
legend_constants[78] = "bv in component Irel (uM_per_ms)"
legend_algebraic[69] = "Qr0 in component Irel (uM_per_ms)"
legend_algebraic[70] = "Qr in component Irel (uM_per_ms)"
legend_algebraic[71] = "sparkV in component Irel (dimensionless)"
legend_algebraic[91] = "spark_rate in component Irel (per_ms)"
legend_constants[54] = "taua in component Irel (ms)"
legend_constants[55] = "taur in component Irel (ms)"
legend_algebraic[92] = "xirp in component Irel (uM_per_ms)"
legend_algebraic[94] = "xicap in component Irel (uM_per_ms)"
legend_algebraic[96] = "xiryr in component Irel (uM_per_ms)"
legend_states[23] = "xir in component Irel (uM_per_ms)"
legend_algebraic[72] = "jup in component Ileak_Iup_Ixfer (uM_per_ms)"
legend_algebraic[73] = "jleak in component Ileak_Iup_Ixfer (uM_per_ms)"
legend_constants[56] = "cup in component Ileak_Iup_Ixfer (uM)"
legend_constants[57] = "kj in component Ileak_Iup_Ixfer (uM)"
legend_constants[58] = "vup in component Ileak_Iup_Ixfer (uM_per_ms)"
legend_constants[59] = "gleak in component Ileak_Iup_Ixfer (per_ms)"
legend_constants[60] = "bcal in component Ca (uM)"
legend_constants[61] = "xkcal in component Ca (uM)"
legend_constants[62] = "srmax in component Ca (uM)"
legend_constants[63] = "srkd in component Ca (uM)"
legend_constants[64] = "bmem in component Ca (uM)"
legend_constants[65] = "kmem in component Ca (uM)"
legend_constants[66] = "bsar in component Ca (uM)"
legend_constants[67] = "ksar in component Ca (uM)"
legend_algebraic[74] = "bpxs in component Ca (dimensionless)"
legend_algebraic[75] = "spxs in component Ca (dimensionless)"
legend_algebraic[76] = "mempxs in component Ca (dimensionless)"
legend_algebraic[77] = "sarpxs in component Ca (dimensionless)"
legend_algebraic[78] = "dcsib in component Ca (dimensionless)"
legend_algebraic[79] = "bpxi in component Ca (dimensionless)"
legend_algebraic[80] = "spxi in component Ca (dimensionless)"
legend_algebraic[81] = "mempxi in component Ca (dimensionless)"
legend_algebraic[82] = "sarpxi in component Ca (dimensionless)"
legend_algebraic[83] = "dciib in component Ca (dimensionless)"
legend_constants[68] = "xkon in component Ca (per_uM_per_ms)"
legend_constants[69] = "xkoff in component Ca (per_ms)"
legend_constants[70] = "btrop in component Ca (uM)"
legend_algebraic[86] = "xbi in component Ca (uM_per_ms)"
legend_algebraic[85] = "xbs in component Ca (uM_per_ms)"
legend_states[24] = "tropi in component Ca (uM)"
legend_states[25] = "trops in component Ca (uM)"
legend_constants[71] = "taud in component Ca (ms)"
legend_constants[72] = "taups in component Ca (ms)"
legend_algebraic[84] = "jd in component Ca (uM_per_ms)"
legend_constants[73] = "K_i in component reversal_potentials (mM)"
legend_constants[74] = "prNaK in component reversal_potentials (dimensionless)"
legend_rates[0] = "d/dt V in component cell (mV)"
legend_rates[2] = "d/dt xh in component INa (dimensionless)"
legend_rates[3] = "d/dt xj in component INa (dimensionless)"
legend_rates[1] = "d/dt xm in component INa (dimensionless)"
legend_rates[5] = "d/dt c1 in component ICaL (dimensionless)"
legend_rates[6] = "d/dt c2 in component ICaL (dimensionless)"
legend_rates[7] = "d/dt xi1ca in component ICaL (dimensionless)"
legend_rates[8] = "d/dt xi1ba in component ICaL (dimensionless)"
legend_rates[9] = "d/dt xi2ca in component ICaL (dimensionless)"
legend_rates[10] = "d/dt xi2ba in component ICaL (dimensionless)"
legend_rates[11] = "d/dt xr in component IKr (dimensionless)"
legend_rates[13] = "d/dt xs1 in component IKs (dimensionless)"
legend_rates[14] = "d/dt xs2 in component IKs (dimensionless)"
legend_rates[15] = "d/dt xtos in component Ito (dimensionless)"
legend_rates[16] = "d/dt ytos in component Ito (dimensionless)"
legend_rates[17] = "d/dt xtof in component Ito (dimensionless)"
legend_rates[18] = "d/dt ytof in component Ito (dimensionless)"
legend_rates[22] = "d/dt Ca_JSR in component Irel (uM)"
legend_rates[23] = "d/dt xir in component Irel (uM_per_ms)"
legend_rates[19] = "d/dt Na_i in component Na (mM)"
legend_rates[4] = "d/dt Ca_dyad in component Ca (uM)"
legend_rates[20] = "d/dt Ca_submem in component Ca (uM)"
legend_rates[12] = "d/dt Ca_i in component Ca (uM)"
legend_rates[21] = "d/dt Ca_NSR in component Ca (uM)"
legend_rates[24] = "d/dt tropi in component Ca (uM)"
legend_rates[25] = "d/dt trops in component Ca (uM)"
return (legend_states, legend_algebraic, legend_voi, legend_constants)
def initConsts():
constants = [0.0] * sizeConstants; states = [0.0] * sizeStates;
constants[0] = 8.314472
constants[1] = 308
constants[2] = 96.4853415
constants[3] = 5.4
constants[4] = 1.8
constants[5] = 136
states[0] = -87.169816169406
constants[6] = 8
constants[7] = 0
constants[8] = 400
constants[9] = 3
constants[10] = -15
states[1] = 0.001075453357
states[2] = 0.990691306716
states[3] = 0.993888937283
constants[11] = 12
states[4] = 1.716573130685
states[5] = 0.000018211252
states[6] = 0.979322592773
states[7] = 0.001208153482
states[8] = 0.000033616596
states[9] = 0.004173008466
states[10] = 0.015242594688
constants[12] = 182
constants[13] = 0.00054
constants[14] = 0
constants[15] = 8
constants[16] = -40
constants[17] = 3
constants[18] = -40
constants[19] = 4
constants[20] = -40
constants[21] = 11.32
constants[22] = 3
constants[23] = 6.09365
constants[24] = 1.03615e-4
constants[25] = 0.00413
constants[26] = 0.00224
constants[27] = 0.3
constants[28] = 3
constants[29] = 0.00195
constants[30] = 78.0329
constants[31] = 1
constants[32] = 3
constants[33] = 0.3
states[11] = 0.007074239331
constants[34] = 0.0125
states[12] = 0.256752008084
constants[35] = 0.1386
states[13] = 0.048267587131
states[14] = 0.105468807033
states[15] = 0.00364776906
states[16] = 0.174403618112
states[17] = 0.003643592594
states[18] = 0.993331326442
constants[36] = 0.04
constants[37] = 0.11
states[19] = 11.441712311614
constants[38] = 1.5
constants[39] = 1.5
constants[40] = 12
states[20] = 0.226941113355
constants[41] = 0.84
constants[42] = 0.3
constants[43] = 1.3
constants[44] = 87.5
constants[45] = 12.3
constants[46] = 0.0036
states[21] = 104.450004990523
constants[47] = 90
states[22] = 97.505463697266
constants[48] = 2.58079
constants[49] = 26841.8
constants[50] = 9000
constants[51] = 0.3576
constants[52] = 0.05
constants[53] = 11.3
constants[54] = 100
constants[55] = 30
states[23] = 0.006679257264
constants[56] = 0.5
constants[57] = 50
constants[58] = 0.4
constants[59] = 0.00002069
constants[60] = 24
constants[61] = 7
constants[62] = 47
constants[63] = 0.6
constants[64] = 15
constants[65] = 0.3
constants[66] = 42
constants[67] = 13
constants[68] = 0.0327
constants[69] = 0.0196
constants[70] = 70
states[24] = 22.171689894953
states[25] = 19.864701949854
constants[71] = 4
constants[72] = 0.5
constants[73] = 140
constants[74] = 0.01833
constants[75] = constants[2]/(constants[0]*constants[1])
constants[76] = (((constants[29]*constants[27])/constants[28])*constants[26])/constants[25]
constants[77] = (exp(constants[5]/67.3000)-1.00000)/7.00000
constants[78] = (1.00000-constants[53])*constants[47]-50.0000
constants[79] = (1.00000/constants[75])*log(constants[3]/constants[73])
return (states, constants)
def computeRates(voi, states, constants):
rates = [0.0] * sizeStates; algebraic = [0.0] * sizeAlgebraic
rates[22] = (states[21]-states[22])/constants[54]
algebraic[1] = custom_piecewise([less(states[0] , -40.0000), 0.135000*exp((80.0000+states[0])/-6.80000) , True, 0.00000])
algebraic[8] = custom_piecewise([less(states[0] , -40.0000), 3.56000*exp(0.0790000*states[0])+310000.*exp(0.350000*states[0]) , True, 1.00000/(0.130000*(1.00000+exp((states[0]+10.6600)/-11.1000)))])
rates[2] = algebraic[1]*(1.00000-states[2])-algebraic[8]*states[2]
algebraic[2] = custom_piecewise([less(states[0] , -40.0000), ((-127140.*exp(0.244400*states[0])-3.47400e-05*exp(-0.0439100*states[0]))*1.00000*(states[0]+37.7800))/(1.00000+exp(0.311000*(states[0]+79.2300))) , True, 0.00000])
algebraic[9] = custom_piecewise([less(states[0] , -40.0000), (0.121200*exp(-0.0105200*states[0]))/(1.00000+exp(-0.137800*(states[0]+40.1400))) , True, (0.300000*exp(-2.53500e-07*states[0]))/(1.00000+exp(-0.100000*(states[0]+32.0000)))])
rates[3] = algebraic[2]*(1.00000-states[3])-algebraic[9]*states[3]
algebraic[0] = custom_piecewise([greater(fabs(states[0]+47.1300) , 0.00100000), (0.320000*1.00000*(states[0]+47.1300))/(1.00000-exp(-0.100000*(states[0]+47.1300))) , True, 3.20000])
algebraic[7] = 0.0800000*exp(-states[0]/11.0000)
rates[1] = algebraic[0]*(1.00000-states[1])-algebraic[7]*states[1]
algebraic[5] = 1.00000/(1.00000+exp(-(states[0]-1.50000)/16.7000))
algebraic[16] = custom_piecewise([less(fabs(states[0]+30.0000) , 0.00100000/0.0687000), 1.00000/(7.19000e-05/0.148000+0.000131000/0.0687000) , True, 1.00000/((7.19000e-05*(states[0]+30.0000))/(1.00000-exp(-0.148000*(states[0]+30.0000)))+(0.000131000*(states[0]+30.0000))/(exp(0.0687000*(states[0]+30.0000))-1.00000))])
rates[13] = (algebraic[5]-states[13])/algebraic[16]
algebraic[4] = custom_piecewise([greater(fabs(states[0]+7.00000) , 0.00100000), (0.00138000*1.00000*(states[0]+7.00000))/(1.00000-exp(-0.123000*(states[0]+7.00000))) , True, 0.00138000/0.123000])
algebraic[11] = custom_piecewise([greater(fabs(states[0]+10.0000) , 0.00100000), (0.000610000*1.00000*(states[0]+10.0000))/(exp(0.145000*(states[0]+10.0000))-1.00000) , True, 0.000610000/0.145000])
algebraic[15] = 1.00000/(algebraic[4]+algebraic[11])
algebraic[19] = 1.00000/(1.00000+exp(-(states[0]+50.0000)/7.50000))
rates[11] = (algebraic[19]-states[11])/algebraic[15]
algebraic[12] = algebraic[5]
algebraic[20] = 4.00000*algebraic[16]
rates[14] = (algebraic[12]-states[14])/algebraic[20]
algebraic[6] = -(states[0]+3.00000)/15.0000
algebraic[17] = 1.00000/(1.00000+exp(algebraic[6]))
algebraic[22] = 9.00000/(1.00000+exp(-algebraic[6]))+0.500000
rates[15] = (algebraic[17]-states[15])/algebraic[22]
algebraic[21] = algebraic[17]
algebraic[13] = ((-states[0]/30.0000)*states[0])/30.0000
algebraic[24] = 3.50000*exp(algebraic[13])+1.50000
rates[17] = (algebraic[21]-states[17])/algebraic[24]
algebraic[18] = 1.00000/(1.00000+exp(-(states[0]-constants[14])/constants[15]))
algebraic[23] = algebraic[18]/constants[31]
algebraic[25] = (1.00000-algebraic[18])/constants[31]
algebraic[26] = 1.00000/(1.00000+power(constants[22]/states[4], 3.00000))
algebraic[34] = 10.0000+4954.00*exp(states[0]/15.6000)
algebraic[35] = constants[30]/(1.00000+power(states[4]/constants[23], 4.00000))+0.100000
algebraic[33] = 1.00000-1.00000/(1.00000+exp(-(states[0]-constants[18])/constants[19]))
algebraic[36] = (algebraic[34]-algebraic[35])*algebraic[33]+algebraic[35]
algebraic[38] = 1.00000/(1.00000+exp(-(states[0]-constants[20])/constants[21]))
algebraic[39] = (algebraic[26]*algebraic[38])/algebraic[36]
algebraic[40] = (1.00000-algebraic[38])/algebraic[36]
algebraic[37] = (algebraic[34]-450.000)*algebraic[33]+450.000
algebraic[41] = algebraic[38]/algebraic[37]
algebraic[42] = (1.00000-algebraic[38])/algebraic[37]
rates[6] = (algebraic[25]*states[5]+algebraic[40]*states[9]+algebraic[42]*states[10])-(algebraic[39]+algebraic[41]+algebraic[23])*states[6]
algebraic[30] = 1.00000/(1.00000+exp(-(states[0]-constants[16])/constants[17]))
algebraic[31] = (1.00000-algebraic[30])/constants[32]
algebraic[28] = 0.0241680*algebraic[26]
algebraic[43] = (((((algebraic[31]*algebraic[23])/algebraic[25])*algebraic[28])/constants[24])*algebraic[40])/algebraic[39]
rates[9] = (algebraic[31]*states[7]+algebraic[39]*states[6])-(algebraic[40]+algebraic[43])*states[9]
algebraic[32] = algebraic[31]
algebraic[44] = (((((algebraic[32]*algebraic[23])/algebraic[25])*constants[25])/constants[26])*algebraic[42])/algebraic[41]
rates[10] = (algebraic[32]*states[8]+algebraic[41]*states[6])-(algebraic[42]+algebraic[44])*states[10]
algebraic[45] = (((((1.00000-states[7])-states[9])-states[8])-states[10])-states[5])-states[6]
rates[5] = (algebraic[23]*states[6]+constants[24]*states[7]+constants[26]*states[8]+constants[28]*algebraic[45])-(algebraic[25]+constants[27]+constants[25]+algebraic[28])*states[5]
algebraic[27] = 0.0182688*algebraic[26]
algebraic[29] = (((algebraic[27]*constants[27])/constants[28])*constants[24])/algebraic[28]
rates[7] = (algebraic[28]*states[5]+algebraic[43]*states[9]+algebraic[27]*algebraic[45])-(algebraic[31]+constants[24]+algebraic[29])*states[7]
rates[8] = (constants[25]*states[5]+algebraic[44]*states[10]+constants[29]*algebraic[45])-(algebraic[32]+constants[26]+constants[76])*states[8]
algebraic[53] = (states[0]+33.5000)/10.0000
algebraic[59] = 1.00000/(1.00000+exp(algebraic[53]))
algebraic[55] = (states[0]+60.0000)/10.0000
algebraic[62] = 3000.00/(1.00000+exp(algebraic[55]))+30.0000
rates[16] = (algebraic[59]-states[16])/algebraic[62]
algebraic[61] = algebraic[59]
algebraic[57] = (states[0]+33.5000)/10.0000
algebraic[64] = 20.0000/(1.00000+exp(algebraic[57]))+20.0000
rates[18] = (algebraic[61]-states[18])/algebraic[64]
algebraic[72] = (constants[58]*states[12]*states[12])/(states[12]*states[12]+constants[56]*constants[56])
algebraic[73] = ((constants[59]*states[21]*states[21])/(states[21]*states[21]+constants[57]*constants[57]))*(states[21]*16.6670-states[12])
algebraic[79] = (constants[60]*constants[61])/((constants[61]+states[12])*(constants[61]+states[12]))
algebraic[80] = (constants[62]*constants[63])/((constants[63]+states[12])*(constants[63]+states[12]))
algebraic[81] = (constants[64]*constants[65])/((constants[65]+states[12])*(constants[65]+states[12]))
algebraic[82] = (constants[66]*constants[67])/((constants[67]+states[12])*(constants[67]+states[12]))
algebraic[83] = 1.00000/(1.00000+algebraic[79]+algebraic[80]+algebraic[81]+algebraic[82])
algebraic[86] = constants[68]*states[12]*(constants[70]-states[24])-constants[69]*states[24]
algebraic[84] = (states[20]-states[12])/constants[71]
rates[12] = algebraic[83]*(((algebraic[84]-algebraic[72])+algebraic[73])-algebraic[86])
rates[24] = algebraic[86]
algebraic[85] = constants[68]*states[20]*(constants[70]-states[25])-constants[69]*states[25]
rates[25] = algebraic[85]
algebraic[87] = (-states[23]+algebraic[72])-algebraic[73]
rates[21] = algebraic[87]
algebraic[69] = custom_piecewise([greater(states[22] , 50.0000) & less(states[22] , constants[47]), (states[22]-50.0000)/1.00000 , greater_equal(states[22] , constants[47]), constants[53]*states[22]+constants[78] , True, 0.00000])
algebraic[70] = (states[21]*algebraic[69])/constants[47]
algebraic[88] = states[20]/1000.00
algebraic[14] = states[0]*2.00000*constants[75]
algebraic[89] = custom_piecewise([less(fabs(algebraic[14]) , 0.00100000), (4.00000*constants[13]*constants[2]*constants[75]*(algebraic[88]*exp(algebraic[14])-0.341000*constants[4]))/(2.00000*constants[75]) , True, (4.00000*constants[13]*states[0]*constants[2]*constants[75]*(algebraic[88]*exp(algebraic[14])-0.341000*constants[4]))/(exp(algebraic[14])-1.00000)])
algebraic[71] = exp(-constants[52]*(states[0]+30.0000))/(1.00000+exp(-constants[52]*(states[0]+30.0000)))
algebraic[91] = (constants[48]/1.00000)*algebraic[45]*fabs(algebraic[89])*algebraic[71]
rates[23] = algebraic[91]*algebraic[70]-(states[23]*(1.00000-(constants[55]*algebraic[87])/states[21]))/constants[55]
algebraic[92] = (((algebraic[45]*algebraic[70]*fabs(algebraic[89])*constants[49])/1.00000)*exp(-constants[51]*(states[0]+30.0000)))/(1.00000+exp(-constants[51]*(states[0]+30.0000)))
algebraic[94] = algebraic[45]*constants[50]*fabs(algebraic[89])
algebraic[96] = algebraic[92]+algebraic[94]
rates[4] = algebraic[96]-(states[4]-states[20])/constants[72]
algebraic[90] = constants[12]*algebraic[45]*algebraic[89]
algebraic[67] = 1.00000/(1.00000+power(constants[42]/states[20], 3.00000))
algebraic[95] = (power(states[19], 3.00000))*constants[4]*exp(states[0]*0.350000*constants[75])-(power(constants[5], 3.00000))*algebraic[88]*exp(states[0]*(0.350000-1.00000)*constants[75])
algebraic[66] = 1.00000+0.200000*exp(states[0]*(0.350000-1.00000)*constants[75])
algebraic[97] = constants[43]*(power(states[19], 3.00000))+(power(constants[44], 3.00000))*algebraic[88]
algebraic[98] = (power(constants[45], 3.00000))*constants[4]*(1.00000+algebraic[88]/constants[46])
algebraic[68] = constants[46]*(power(constants[5], 3.00000))*(1.00000+power(states[19]/constants[45], 3.00000))
algebraic[99] = (power(states[19], 3.00000))*constants[4]+(power(constants[5], 3.00000))*algebraic[88]
algebraic[100] = algebraic[97]+algebraic[98]+algebraic[68]+algebraic[99]
algebraic[101] = (constants[41]*algebraic[67]*algebraic[95])/(algebraic[66]*algebraic[100])
algebraic[74] = (constants[60]*constants[61])/((constants[61]+states[20])*(constants[61]+states[20]))
algebraic[75] = (constants[62]*constants[63])/((constants[63]+states[20])*(constants[63]+states[20]))
algebraic[76] = (constants[64]*constants[65])/((constants[65]+states[20])*(constants[65]+states[20]))
algebraic[77] = (constants[66]*constants[67])/((constants[67]+states[20])*(constants[67]+states[20]))
algebraic[78] = 1.00000/(1.00000+algebraic[74]+algebraic[75]+algebraic[76]+algebraic[77])
rates[20] = algebraic[78]*(50.0000*(((states[23]-algebraic[84])-algebraic[90])+algebraic[101])-algebraic[85])
algebraic[63] = 1.00000/(1.00000+0.124500*exp(-0.100000*states[0]*constants[75])+0.0365000*constants[77]*exp(-states[0]*constants[75]))
algebraic[65] = (((constants[38]*algebraic[63]*states[19])/(states[19]+constants[40]))*constants[3])/(constants[3]+constants[39])
algebraic[102] = constants[6]*algebraic[101]
algebraic[105] = (1.00000/constants[75])*log(constants[5]/states[19])
algebraic[106] = constants[11]*states[2]*states[3]*states[1]*states[1]*states[1]*(states[0]-algebraic[105])
rates[19] = -(algebraic[106]+3.00000*algebraic[65]+3.00000*algebraic[102])/(constants[6]*1000.00)
algebraic[46] = 1.02000/(1.00000+exp(0.238500*((states[0]-constants[79])-59.2150)))
algebraic[47] = (0.491240*exp(0.0803200*((states[0]-constants[79])+5.47600))+1.00000*exp(0.0617500*((states[0]-constants[79])-594.310)))/(1.00000+exp(-0.514300*((states[0]-constants[79])+4.75300)))
algebraic[48] = algebraic[46]/(algebraic[46]+algebraic[47])
algebraic[49] = constants[33]*(power(constants[3]/5.40000, 1.0/2))*algebraic[48]*(states[0]-constants[79])
algebraic[54] = 1.00000/(1.00000+exp(algebraic[53]))
algebraic[56] = constants[36]*states[15]*(states[16]+0.500000*algebraic[54])*(states[0]-constants[79])
algebraic[58] = constants[37]*states[17]*states[18]*(states[0]-constants[79])
algebraic[60] = algebraic[56]+algebraic[58]
algebraic[93] = 2.00000*constants[6]*algebraic[90]
algebraic[50] = 1.00000/(1.00000+exp((states[0]+33.0000)/22.4000))
algebraic[51] = constants[34]*(power(constants[3]/5.40000, 1.0/2))*states[11]*algebraic[50]*(states[0]-constants[79])
algebraic[103] = (1.00000/constants[75])*log((constants[3]+constants[74]*constants[5])/(constants[73]+constants[74]*states[19]))
algebraic[52] = 1.00000+0.800000/(1.00000+power(0.500000/states[12], 3.00000))
algebraic[104] = constants[35]*algebraic[52]*states[13]*states[14]*(states[0]-algebraic[103])
algebraic[3] = floor(voi/constants[8])*constants[8]
algebraic[10] = custom_piecewise([greater_equal(voi-algebraic[3] , constants[7]) & less_equal(voi-algebraic[3] , constants[7]+constants[9]), constants[10] , True, 0.00000])
algebraic[107] = -(algebraic[106]+algebraic[49]+algebraic[51]+algebraic[104]+algebraic[60]+algebraic[102]+algebraic[93]+algebraic[65]+algebraic[10])
rates[0] = algebraic[107]
return(rates)
def computeAlgebraic(constants, states, voi):
algebraic = array([[0.0] * len(voi)] * sizeAlgebraic)
states = array(states)
voi = array(voi)
algebraic[1] = custom_piecewise([less(states[0] , -40.0000), 0.135000*exp((80.0000+states[0])/-6.80000) , True, 0.00000])
algebraic[8] = custom_piecewise([less(states[0] , -40.0000), 3.56000*exp(0.0790000*states[0])+310000.*exp(0.350000*states[0]) , True, 1.00000/(0.130000*(1.00000+exp((states[0]+10.6600)/-11.1000)))])
algebraic[2] = custom_piecewise([less(states[0] , -40.0000), ((-127140.*exp(0.244400*states[0])-3.47400e-05*exp(-0.0439100*states[0]))*1.00000*(states[0]+37.7800))/(1.00000+exp(0.311000*(states[0]+79.2300))) , True, 0.00000])
algebraic[9] = custom_piecewise([less(states[0] , -40.0000), (0.121200*exp(-0.0105200*states[0]))/(1.00000+exp(-0.137800*(states[0]+40.1400))) , True, (0.300000*exp(-2.53500e-07*states[0]))/(1.00000+exp(-0.100000*(states[0]+32.0000)))])
algebraic[0] = custom_piecewise([greater(fabs(states[0]+47.1300) , 0.00100000), (0.320000*1.00000*(states[0]+47.1300))/(1.00000-exp(-0.100000*(states[0]+47.1300))) , True, 3.20000])
algebraic[7] = 0.0800000*exp(-states[0]/11.0000)
algebraic[5] = 1.00000/(1.00000+exp(-(states[0]-1.50000)/16.7000))
algebraic[16] = custom_piecewise([less(fabs(states[0]+30.0000) , 0.00100000/0.0687000), 1.00000/(7.19000e-05/0.148000+0.000131000/0.0687000) , True, 1.00000/((7.19000e-05*(states[0]+30.0000))/(1.00000-exp(-0.148000*(states[0]+30.0000)))+(0.000131000*(states[0]+30.0000))/(exp(0.0687000*(states[0]+30.0000))-1.00000))])
algebraic[4] = custom_piecewise([greater(fabs(states[0]+7.00000) , 0.00100000), (0.00138000*1.00000*(states[0]+7.00000))/(1.00000-exp(-0.123000*(states[0]+7.00000))) , True, 0.00138000/0.123000])
algebraic[11] = custom_piecewise([greater(fabs(states[0]+10.0000) , 0.00100000), (0.000610000*1.00000*(states[0]+10.0000))/(exp(0.145000*(states[0]+10.0000))-1.00000) , True, 0.000610000/0.145000])
algebraic[15] = 1.00000/(algebraic[4]+algebraic[11])
algebraic[19] = 1.00000/(1.00000+exp(-(states[0]+50.0000)/7.50000))
algebraic[12] = algebraic[5]
algebraic[20] = 4.00000*algebraic[16]
algebraic[6] = -(states[0]+3.00000)/15.0000
algebraic[17] = 1.00000/(1.00000+exp(algebraic[6]))
algebraic[22] = 9.00000/(1.00000+exp(-algebraic[6]))+0.500000
algebraic[21] = algebraic[17]
algebraic[13] = ((-states[0]/30.0000)*states[0])/30.0000
algebraic[24] = 3.50000*exp(algebraic[13])+1.50000
algebraic[18] = 1.00000/(1.00000+exp(-(states[0]-constants[14])/constants[15]))
algebraic[23] = algebraic[18]/constants[31]
algebraic[25] = (1.00000-algebraic[18])/constants[31]
algebraic[26] = 1.00000/(1.00000+power(constants[22]/states[4], 3.00000))
algebraic[34] = 10.0000+4954.00*exp(states[0]/15.6000)
algebraic[35] = constants[30]/(1.00000+power(states[4]/constants[23], 4.00000))+0.100000
algebraic[33] = 1.00000-1.00000/(1.00000+exp(-(states[0]-constants[18])/constants[19]))
algebraic[36] = (algebraic[34]-algebraic[35])*algebraic[33]+algebraic[35]
algebraic[38] = 1.00000/(1.00000+exp(-(states[0]-constants[20])/constants[21]))
algebraic[39] = (algebraic[26]*algebraic[38])/algebraic[36]
algebraic[40] = (1.00000-algebraic[38])/algebraic[36]
algebraic[37] = (algebraic[34]-450.000)*algebraic[33]+450.000
algebraic[41] = algebraic[38]/algebraic[37]
algebraic[42] = (1.00000-algebraic[38])/algebraic[37]
algebraic[30] = 1.00000/(1.00000+exp(-(states[0]-constants[16])/constants[17]))
algebraic[31] = (1.00000-algebraic[30])/constants[32]
algebraic[28] = 0.0241680*algebraic[26]
algebraic[43] = (((((algebraic[31]*algebraic[23])/algebraic[25])*algebraic[28])/constants[24])*algebraic[40])/algebraic[39]
algebraic[32] = algebraic[31]
algebraic[44] = (((((algebraic[32]*algebraic[23])/algebraic[25])*constants[25])/constants[26])*algebraic[42])/algebraic[41]
algebraic[45] = (((((1.00000-states[7])-states[9])-states[8])-states[10])-states[5])-states[6]
algebraic[27] = 0.0182688*algebraic[26]
algebraic[29] = (((algebraic[27]*constants[27])/constants[28])*constants[24])/algebraic[28]
algebraic[53] = (states[0]+33.5000)/10.0000
algebraic[59] = 1.00000/(1.00000+exp(algebraic[53]))
algebraic[55] = (states[0]+60.0000)/10.0000
algebraic[62] = 3000.00/(1.00000+exp(algebraic[55]))+30.0000
algebraic[61] = algebraic[59]
algebraic[57] = (states[0]+33.5000)/10.0000
algebraic[64] = 20.0000/(1.00000+exp(algebraic[57]))+20.0000
algebraic[72] = (constants[58]*states[12]*states[12])/(states[12]*states[12]+constants[56]*constants[56])
algebraic[73] = ((constants[59]*states[21]*states[21])/(states[21]*states[21]+constants[57]*constants[57]))*(states[21]*16.6670-states[12])
algebraic[79] = (constants[60]*constants[61])/((constants[61]+states[12])*(constants[61]+states[12]))
algebraic[80] = (constants[62]*constants[63])/((constants[63]+states[12])*(constants[63]+states[12]))
algebraic[81] = (constants[64]*constants[65])/((constants[65]+states[12])*(constants[65]+states[12]))
algebraic[82] = (constants[66]*constants[67])/((constants[67]+states[12])*(constants[67]+states[12]))
algebraic[83] = 1.00000/(1.00000+algebraic[79]+algebraic[80]+algebraic[81]+algebraic[82])
algebraic[86] = constants[68]*states[12]*(constants[70]-states[24])-constants[69]*states[24]
algebraic[84] = (states[20]-states[12])/constants[71]
algebraic[85] = constants[68]*states[20]*(constants[70]-states[25])-constants[69]*states[25]
algebraic[87] = (-states[23]+algebraic[72])-algebraic[73]
algebraic[69] = custom_piecewise([greater(states[22] , 50.0000) & less(states[22] , constants[47]), (states[22]-50.0000)/1.00000 , greater_equal(states[22] , constants[47]), constants[53]*states[22]+constants[78] , True, 0.00000])
algebraic[70] = (states[21]*algebraic[69])/constants[47]
algebraic[88] = states[20]/1000.00
algebraic[14] = states[0]*2.00000*constants[75]
algebraic[89] = custom_piecewise([less(fabs(algebraic[14]) , 0.00100000), (4.00000*constants[13]*constants[2]*constants[75]*(algebraic[88]*exp(algebraic[14])-0.341000*constants[4]))/(2.00000*constants[75]) , True, (4.00000*constants[13]*states[0]*constants[2]*constants[75]*(algebraic[88]*exp(algebraic[14])-0.341000*constants[4]))/(exp(algebraic[14])-1.00000)])
algebraic[71] = exp(-constants[52]*(states[0]+30.0000))/(1.00000+exp(-constants[52]*(states[0]+30.0000)))
algebraic[91] = (constants[48]/1.00000)*algebraic[45]*fabs(algebraic[89])*algebraic[71]
algebraic[92] = (((algebraic[45]*algebraic[70]*fabs(algebraic[89])*constants[49])/1.00000)*exp(-constants[51]*(states[0]+30.0000)))/(1.00000+exp(-constants[51]*(states[0]+30.0000)))
algebraic[94] = algebraic[45]*constants[50]*fabs(algebraic[89])
algebraic[96] = algebraic[92]+algebraic[94]
algebraic[90] = constants[12]*algebraic[45]*algebraic[89]
algebraic[67] = 1.00000/(1.00000+power(constants[42]/states[20], 3.00000))
algebraic[95] = (power(states[19], 3.00000))*constants[4]*exp(states[0]*0.350000*constants[75])-(power(constants[5], 3.00000))*algebraic[88]*exp(states[0]*(0.350000-1.00000)*constants[75])
algebraic[66] = 1.00000+0.200000*exp(states[0]*(0.350000-1.00000)*constants[75])
algebraic[97] = constants[43]*(power(states[19], 3.00000))+(power(constants[44], 3.00000))*algebraic[88]
algebraic[98] = (power(constants[45], 3.00000))*constants[4]*(1.00000+algebraic[88]/constants[46])
algebraic[68] = constants[46]*(power(constants[5], 3.00000))*(1.00000+power(states[19]/constants[45], 3.00000))
algebraic[99] = (power(states[19], 3.00000))*constants[4]+(power(constants[5], 3.00000))*algebraic[88]
algebraic[100] = algebraic[97]+algebraic[98]+algebraic[68]+algebraic[99]
algebraic[101] = (constants[41]*algebraic[67]*algebraic[95])/(algebraic[66]*algebraic[100])
algebraic[74] = (constants[60]*constants[61])/((constants[61]+states[20])*(constants[61]+states[20]))
algebraic[75] = (constants[62]*constants[63])/((constants[63]+states[20])*(constants[63]+states[20]))
algebraic[76] = (constants[64]*constants[65])/((constants[65]+states[20])*(constants[65]+states[20]))
algebraic[77] = (constants[66]*constants[67])/((constants[67]+states[20])*(constants[67]+states[20]))
algebraic[78] = 1.00000/(1.00000+algebraic[74]+algebraic[75]+algebraic[76]+algebraic[77])
algebraic[63] = 1.00000/(1.00000+0.124500*exp(-0.100000*states[0]*constants[75])+0.0365000*constants[77]*exp(-states[0]*constants[75]))
algebraic[65] = (((constants[38]*algebraic[63]*states[19])/(states[19]+constants[40]))*constants[3])/(constants[3]+constants[39])
algebraic[102] = constants[6]*algebraic[101]
algebraic[105] = (1.00000/constants[75])*log(constants[5]/states[19])
algebraic[106] = constants[11]*states[2]*states[3]*states[1]*states[1]*states[1]*(states[0]-algebraic[105])
algebraic[46] = 1.02000/(1.00000+exp(0.238500*((states[0]-constants[79])-59.2150)))
algebraic[47] = (0.491240*exp(0.0803200*((states[0]-constants[79])+5.47600))+1.00000*exp(0.0617500*((states[0]-constants[79])-594.310)))/(1.00000+exp(-0.514300*((states[0]-constants[79])+4.75300)))
algebraic[48] = algebraic[46]/(algebraic[46]+algebraic[47])
algebraic[49] = constants[33]*(power(constants[3]/5.40000, 1.0/2))*algebraic[48]*(states[0]-constants[79])
algebraic[54] = 1.00000/(1.00000+exp(algebraic[53]))
algebraic[56] = constants[36]*states[15]*(states[16]+0.500000*algebraic[54])*(states[0]-constants[79])
algebraic[58] = constants[37]*states[17]*states[18]*(states[0]-constants[79])
algebraic[60] = algebraic[56]+algebraic[58]
algebraic[93] = 2.00000*constants[6]*algebraic[90]
algebraic[50] = 1.00000/(1.00000+exp((states[0]+33.0000)/22.4000))
algebraic[51] = constants[34]*(power(constants[3]/5.40000, 1.0/2))*states[11]*algebraic[50]*(states[0]-constants[79])
algebraic[103] = (1.00000/constants[75])*log((constants[3]+constants[74]*constants[5])/(constants[73]+constants[74]*states[19]))
algebraic[52] = 1.00000+0.800000/(1.00000+power(0.500000/states[12], 3.00000))
algebraic[104] = constants[35]*algebraic[52]*states[13]*states[14]*(states[0]-algebraic[103])
algebraic[3] = floor(voi/constants[8])*constants[8]
algebraic[10] = custom_piecewise([greater_equal(voi-algebraic[3] , constants[7]) & less_equal(voi-algebraic[3] , constants[7]+constants[9]), constants[10] , True, 0.00000])
algebraic[107] = -(algebraic[106]+algebraic[49]+algebraic[51]+algebraic[104]+algebraic[60]+algebraic[102]+algebraic[93]+algebraic[65]+algebraic[10])
return algebraic
def custom_piecewise(cases):
"""Compute result of a piecewise function"""
return select(cases[0::2],cases[1::2])
def solve_model():
"""Solve model with ODE solver"""
from scipy.integrate import ode
# Initialise constants and state variables
(init_states, constants) = initConsts()
# Set timespan to solve over
voi = linspace(0, 10, 500)
# Construct ODE object to solve
r = ode(computeRates)
r.set_integrator('vode', method='bdf', atol=1e-06, rtol=1e-06, max_step=1)
r.set_initial_value(init_states, voi[0])
r.set_f_params(constants)
# Solve model
states = array([[0.0] * len(voi)] * sizeStates)
states[:,0] = init_states
for (i,t) in enumerate(voi[1:]):
if r.successful():
r.integrate(t)
states[:,i+1] = r.y
else:
break
# Compute algebraic variables
algebraic = computeAlgebraic(constants, states, voi)
return (voi, states, algebraic)
def plot_model(voi, states, algebraic):
"""Plot variables against variable of integration"""
import pylab
(legend_states, legend_algebraic, legend_voi, legend_constants) = createLegends()
pylab.figure(1)
pylab.plot(voi,vstack((states,algebraic)).T)
pylab.xlabel(legend_voi)
pylab.legend(legend_states + legend_algebraic, loc='best')
pylab.show()
if __name__ == "__main__":
(voi, states, algebraic) = solve_model()
plot_model(voi, states, algebraic)