Generated Code
The following is python code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
# Size of variable arrays:
sizeAlgebraic = 22
sizeStates = 13
sizeConstants = 67
from math import *
from numpy import *
def createLegends():
legend_states = [""] * sizeStates
legend_rates = [""] * sizeStates
legend_algebraic = [""] * sizeAlgebraic
legend_voi = ""
legend_constants = [""] * sizeConstants
legend_voi = "time in component environment (second)"
legend_states[0] = "GlcI in component GlcI (millimolar)"
legend_algebraic[5] = "vHK in component vHK (flux)"
legend_algebraic[4] = "vGlcTr in component vGlcTr (flux)"
legend_states[1] = "hexose_P in component hexose_P (millimolar)"
legend_algebraic[6] = "vPFK in component vPFK (flux)"
legend_states[2] = "Fru16BP in component Fru16BP (millimolar)"
legend_algebraic[14] = "vALD in component vALD (flux)"
legend_states[3] = "triose_P in component triose_P (millimolar)"
legend_algebraic[16] = "vGAPDH in component vGAPDH (flux)"
legend_algebraic[17] = "vGDH in component vGDH (flux)"
legend_algebraic[8] = "vGPO in component vGPO (flux)"
legend_states[4] = "BPGA13 in component BPGA13 (millimolar)"
legend_algebraic[20] = "vPGK in component vPGK (flux)"
legend_states[5] = "N in component N (millimolar)"
legend_algebraic[21] = "vPK in component vPK (flux)"
legend_states[6] = "Pyr in component Pyr (millimolar)"
legend_algebraic[9] = "vPyrTr in component vPyrTr (flux)"
legend_states[7] = "NADH in component NADH (millimolar)"
legend_states[8] = "NAD in component NAD (millimolar)"
legend_states[9] = "Gly3P in component Gly3P (millimolar)"
legend_algebraic[11] = "vGlyK in component vGlyK (flux)"
legend_states[10] = "Gly in component Gly (millimolar)"
legend_states[11] = "P in component P (millimolar)"
legend_algebraic[10] = "vATPase in component vATPase (flux)"
legend_algebraic[0] = "ATP in component ATP (millimolar)"
legend_constants[0] = "sumA in component ATP (millimolar)"
legend_constants[1] = "Keq_AK in component ATP (dimensionless)"
legend_algebraic[1] = "ADP in component ADP (millimolar)"
legend_algebraic[12] = "DHAP in component DHAP (millimolar)"
legend_algebraic[3] = "Fru6P in component Fru6P (millimolar)"
legend_algebraic[13] = "GAP in component GAP (millimolar)"
legend_states[12] = "Glc6P in component Glc6P (millimolar)"
legend_constants[2] = "sumc4 in component DHAP (millimolar)"
legend_constants[3] = "sumc5 in component DHAP (millimolar)"
legend_algebraic[2] = "GlcE in component GlcE (millimolar)"
legend_algebraic[7] = "vPGI in component vPGI (flux)"
legend_algebraic[18] = "PGA3 in component PGA3 (millimolar)"
legend_algebraic[19] = "PEP in component PEP (millimolar)"
legend_constants[4] = "Keq_ENO in component PEP (dimensionless)"
legend_constants[5] = "Keq_PGM in component PEP (dimensionless)"
legend_constants[6] = "K_Glc in component vGlcTr (millimolar)"
legend_constants[7] = "alpha in component vGlcTr (dimensionless)"
legend_constants[8] = "vGlcTr_max in component vGlcTr (flux)"
legend_constants[9] = "K_GlcI in component vHK (millimolar)"
legend_constants[10] = "K_Glc6P in component vHK (millimolar)"
legend_constants[11] = "K_ATP in component vHK (millimolar)"
legend_constants[12] = "K_ADP in component vHK (millimolar)"
legend_constants[13] = "vHK_max in component vHK (flux)"
legend_constants[14] = "K_Glc6P in component vPGI (millimolar)"
legend_constants[15] = "K_Fru6P in component vPGI (millimolar)"
legend_constants[16] = "vPGI_max in component vPGI (flux)"
legend_constants[17] = "Ki_1 in component vPFK (millimolar)"
legend_constants[18] = "Ki_2 in component vPFK (millimolar)"
legend_constants[19] = "KM_Fru6P in component vPFK (millimolar)"
legend_constants[20] = "KM_ATP in component vPFK (millimolar)"
legend_constants[21] = "vPFK_max in component vPFK (flux)"
legend_constants[22] = "sumA in component vALD (millimolar)"
legend_constants[23] = "KM_GAP in component vALD (millimolar)"
legend_constants[24] = "Ki_GAP in component vALD (millimolar)"
legend_constants[25] = "KM_DHAP in component vALD (millimolar)"
legend_constants[26] = "vALD_max_forward in component vALD (flux)"
legend_constants[27] = "vALD_max_reverse in component vALD (flux)"
legend_algebraic[15] = "vTPI in component vTPI (flux)"
legend_constants[28] = "K_DHAP in component vTPI (millimolar)"
legend_constants[29] = "K_GAP in component vTPI (millimolar)"
legend_constants[30] = "vTPI_max in component vTPI (flux)"
legend_constants[31] = "K_NAD in component vGAPDH (millimolar)"
legend_constants[32] = "K_GAP in component vGAPDH (millimolar)"
legend_constants[33] = "K_BPGA13 in component vGAPDH (millimolar)"
legend_constants[34] = "K_NADH in component vGAPDH (millimolar)"
legend_constants[35] = "vGAPDH_max_forward in component vGAPDH (flux)"
legend_constants[36] = "vGAPDH_max_reverse in component vGAPDH (flux)"
legend_constants[37] = "vGAPDH_max in component vGAPDH (dimensionless)"
legend_constants[38] = "K_NADH in component vGDH (millimolar)"
legend_constants[39] = "K_Gly3P in component vGDH (millimolar)"
legend_constants[40] = "K_DHAP in component vGDH (millimolar)"
legend_constants[41] = "K_NAD in component vGDH (millimolar)"
legend_constants[42] = "vGDH_max_forward in component vGDH (flux)"
legend_constants[43] = "vGDH_max_reverse in component vGDH (flux)"
legend_constants[44] = "vGDH_max in component vGDH (dimensionless)"
legend_constants[45] = "K_Gly3P in component vGPO (millimolar)"
legend_constants[46] = "vGPO_max in component vGPO (flux)"
legend_constants[47] = "K_pyruvate in component vPyrTr (millimolar)"
legend_constants[48] = "vPyrTr_max in component vPyrTr (flux)"
legend_constants[49] = "K_ADP in component vPGK (millimolar)"
legend_constants[50] = "K_BPGA13 in component vPGK (millimolar)"
legend_constants[51] = "K_PGA3 in component vPGK (millimolar)"
legend_constants[52] = "K_ATP in component vPGK (millimolar)"
legend_constants[53] = "vPGK_max_forward in component vPGK (flux)"
legend_constants[54] = "vPGK_max_reverse in component vPGK (flux)"
legend_constants[55] = "vPGK_max in component vPGK (dimensionless)"
legend_constants[56] = "KM_ADP in component vPK (millimolar)"
legend_constants[57] = "n in component vPK (dimensionless)"
legend_constants[58] = "vPK_max in component vPK (flux)"
legend_constants[59] = "k in component vATPase (flux)"
legend_constants[60] = "K_ADP in component vGlyK (millimolar)"
legend_constants[61] = "K_Gly3P in component vGlyK (millimolar)"
legend_constants[62] = "K_Gly in component vGlyK (millimolar)"
legend_constants[63] = "K_ATP in component vGlyK (millimolar)"
legend_constants[64] = "vGlyK_max_forward in component vGlyK (flux)"
legend_constants[65] = "vGlyK_max_reverse in component vGlyK (flux)"
legend_constants[66] = "vGlyK_max in component vGlyK (dimensionless)"
legend_rates[0] = "d/dt GlcI in component GlcI (millimolar)"
legend_rates[1] = "d/dt hexose_P in component hexose_P (millimolar)"
legend_rates[2] = "d/dt Fru16BP in component Fru16BP (millimolar)"
legend_rates[3] = "d/dt triose_P in component triose_P (millimolar)"
legend_rates[4] = "d/dt BPGA13 in component BPGA13 (millimolar)"
legend_rates[5] = "d/dt N in component N (millimolar)"
legend_rates[6] = "d/dt Pyr in component Pyr (millimolar)"
legend_rates[7] = "d/dt NADH in component NADH (millimolar)"
legend_rates[8] = "d/dt NAD in component NAD (millimolar)"
legend_rates[9] = "d/dt Gly3P in component Gly3P (millimolar)"
legend_rates[10] = "d/dt Gly in component Gly (millimolar)"
legend_rates[11] = "d/dt P in component P (millimolar)"
legend_rates[12] = "d/dt Glc6P in component Glc6P (millimolar)"
return (legend_states, legend_algebraic, legend_voi, legend_constants)
def initConsts():
constants = [0.0] * sizeConstants; states = [0.0] * sizeStates;
states[0] = 0.0340009
states[1] = 2.583763
states[2] = 16.5371
states[3] = 3.9391429
states[4] = 0.0326745
states[5] = 1.59603
states[6] = 4.77413
states[7] = 0.0448639
states[8] = 0.0448639
states[9] = 0.0
states[10] = 0.0
states[11] = 7.63936
constants[0] = 3.9
constants[1] = 0.442
states[12] = 2.07199
constants[2] = 45.0
constants[3] = 5.0
constants[4] = 6.7
constants[5] = 0.187
constants[6] = 2.0
constants[7] = 0.75
constants[8] = 106.2
constants[9] = 0.1
constants[10] = 12.0
constants[11] = 0.116
constants[12] = 0.126
constants[13] = 625.0
constants[14] = 0.4
constants[15] = 0.12
constants[16] = 848.0
constants[17] = 15.8
constants[18] = 10.7
constants[19] = 0.82
constants[20] = 0.026
constants[21] = 780.0
constants[22] = 6.0
constants[23] = 0.067
constants[24] = 0.098
constants[25] = 0.015
constants[26] = 184.5
constants[27] = 219.555
constants[28] = 1.2
constants[29] = 0.25
constants[30] = 842.0
constants[31] = 0.45
constants[32] = 0.15
constants[33] = 0.1
constants[34] = 0.02
constants[35] = 1470.0
constants[36] = 984.9
constants[37] = 1.0
constants[38] = 0.01
constants[39] = 2.0
constants[40] = 0.1
constants[41] = 0.4
constants[42] = 533.0
constants[43] = 149.24
constants[44] = 1.0
constants[45] = 1.7
constants[46] = 368.0
constants[47] = 1.96
constants[48] = 200.0
constants[49] = 0.1
constants[50] = 0.05
constants[51] = 1.62
constants[52] = 0.29
constants[53] = 640.0
constants[54] = 18.56
constants[55] = 1.0
constants[56] = 0.114
constants[57] = 2.5
constants[58] = 2600
constants[59] = 50
constants[60] = 0.12
constants[61] = 5.1
constants[62] = 0.12
constants[63] = 0.19
constants[64] = 220.0
constants[65] = 334000.0
constants[66] = 1.0
return (states, constants)
def computeRates(voi, states, constants):
rates = [0.0] * sizeStates; algebraic = [0.0] * sizeAlgebraic
algebraic[0] = ((states[11]*(1.00000-4.00000*constants[1])-constants[0])+power(power(constants[0]-(1.00000-4.00000*constants[1])*states[11], 2.00000)+4.00000*(1.00000-4.00000*constants[1])*(-constants[1]*(power(states[11], 2.00000))), 0.500000))/(2.00000*(1.00000-4.00000*constants[1]))
algebraic[1] = states[11]-2.00000*algebraic[0]
algebraic[5] = (constants[13]*states[0]*algebraic[0])/(constants[11]*constants[9]*(1.00000+states[12]/constants[10]+states[0]/constants[9])*(1.00000+algebraic[0]/constants[11]+algebraic[1]/constants[12]))
algebraic[2] = custom_piecewise([greater_equal(voi , 60.0000) & less(voi , 61.0000), 5.00000 , True, 0.0500000])
algebraic[4] = constants[8]*((algebraic[2]-states[0])/(constants[6]+algebraic[2]+states[0]+constants[7]*algebraic[2]*(states[0]/constants[6])))
rates[0] = algebraic[4]-algebraic[5]
algebraic[3] = states[1]-states[12]
algebraic[6] = (constants[17]*constants[21]*algebraic[3]*algebraic[0])/(constants[20]*constants[19]*(states[2]+constants[17])*(1.00000+states[2]/constants[18]+algebraic[3]/constants[19])*(1.00000+algebraic[0]/constants[20]))
rates[1] = algebraic[5]-algebraic[6]
algebraic[7] = (constants[16]*(states[12]/constants[14]-algebraic[3]/constants[15]))/(1.00000+states[12]/constants[14]+algebraic[3]/constants[15])
rates[12] = algebraic[5]-algebraic[7]
algebraic[11] = (constants[66]*((constants[64]*algebraic[1]*states[9])/(constants[60]*constants[61])-(constants[65]*algebraic[0]*states[10])/(constants[63]*constants[62])))/((1.00000+states[9]/constants[61]+states[10]/constants[62])*(1.00000+algebraic[1]/constants[60]+algebraic[0]/constants[63]))
rates[10] = algebraic[11]
rootfind_0(voi, constants, rates, states, algebraic)
algebraic[14] = ((constants[26]*states[2])/(0.00900000*(1.00000+algebraic[0]/0.680000+algebraic[1]/1.51000+(constants[22]-(algebraic[0]+algebraic[1]))/3.65000))-(constants[27]*algebraic[13]*algebraic[12])/(constants[25]*constants[23]))/(1.00000+algebraic[13]/constants[23]+algebraic[12]/constants[25]+(algebraic[13]*algebraic[12])/(constants[25]*constants[23])+states[2]/(0.00900000*(1.00000+algebraic[0]/0.680000+algebraic[1]/1.51000+(constants[22]-(algebraic[0]+algebraic[1]))/3.65000))+(states[2]*algebraic[13])/(constants[24]*0.00900000*(1.00000+algebraic[0]/0.680000+algebraic[1]/1.51000+(constants[22]-(algebraic[0]+algebraic[1]))/3.65000)))
rates[2] = algebraic[6]-algebraic[14]
algebraic[16] = constants[37]*((constants[35]*(algebraic[13]*((states[8]/constants[32])/constants[31])-(constants[36]/constants[35])*(((states[4]*states[7])/constants[33])/constants[34])))/((1.00000+algebraic[13]/constants[32]+states[4]/constants[33])*(1.00000+states[8]/constants[31]+states[7]/constants[34])))
algebraic[17] = (constants[44]*constants[42]*((states[7]*algebraic[12])/(constants[38]*constants[40])-(constants[43]*states[8]*states[9])/(constants[39]*constants[41]*constants[42])))/((1.00000+states[8]/constants[41]+states[7]/constants[38])*(1.00000+algebraic[12]/constants[40]+states[9]/constants[39]))
algebraic[8] = (constants[46]*states[9])/(states[9]+constants[45])
rates[3] = (2.00000*algebraic[14]+algebraic[8])-(algebraic[16]+algebraic[17])
rates[7] = algebraic[16]-algebraic[17]
rates[8] = algebraic[17]-algebraic[16]
rates[9] = algebraic[17]-(algebraic[11]+algebraic[8])
rootfind_1(voi, constants, rates, states, algebraic)
algebraic[20] = (constants[55]*constants[53]*((-constants[54]*algebraic[18]*algebraic[0])/(constants[52]*constants[51]*constants[53])+(states[4]*algebraic[1])/(constants[50]*constants[49])))/((1.00000+states[4]/constants[50]+algebraic[18]/constants[51])*(1.00000+algebraic[1]/constants[49]+algebraic[0]/constants[52]))
rates[4] = algebraic[16]-algebraic[20]
algebraic[21] = ((constants[58]*(power(algebraic[19]/(0.340000*(1.00000+algebraic[0]/0.570000+algebraic[1]/0.640000)), constants[57]))*algebraic[1])/constants[56])/((1.00000+power(algebraic[19]/(0.340000*(1.00000+algebraic[0]/0.570000+algebraic[1]/0.640000)), constants[57]))*(1.00000+algebraic[1]/constants[56]))
rates[5] = algebraic[20]-algebraic[21]
algebraic[9] = ((constants[48]*states[6])/constants[47])/(1.00000+states[6]/constants[47])
rates[6] = algebraic[21]-algebraic[9]
algebraic[10] = (constants[59]*algebraic[0])/algebraic[1]
rates[11] = (algebraic[20]+algebraic[11]+algebraic[21])-(algebraic[5]+algebraic[6]+algebraic[10])
return(rates)
def computeAlgebraic(constants, states, voi):
algebraic = array([[0.0] * len(voi)] * sizeAlgebraic)
states = array(states)
voi = array(voi)
algebraic[0] = ((states[11]*(1.00000-4.00000*constants[1])-constants[0])+power(power(constants[0]-(1.00000-4.00000*constants[1])*states[11], 2.00000)+4.00000*(1.00000-4.00000*constants[1])*(-constants[1]*(power(states[11], 2.00000))), 0.500000))/(2.00000*(1.00000-4.00000*constants[1]))
algebraic[1] = states[11]-2.00000*algebraic[0]
algebraic[5] = (constants[13]*states[0]*algebraic[0])/(constants[11]*constants[9]*(1.00000+states[12]/constants[10]+states[0]/constants[9])*(1.00000+algebraic[0]/constants[11]+algebraic[1]/constants[12]))
algebraic[2] = custom_piecewise([greater_equal(voi , 60.0000) & less(voi , 61.0000), 5.00000 , True, 0.0500000])
algebraic[4] = constants[8]*((algebraic[2]-states[0])/(constants[6]+algebraic[2]+states[0]+constants[7]*algebraic[2]*(states[0]/constants[6])))
algebraic[3] = states[1]-states[12]
algebraic[6] = (constants[17]*constants[21]*algebraic[3]*algebraic[0])/(constants[20]*constants[19]*(states[2]+constants[17])*(1.00000+states[2]/constants[18]+algebraic[3]/constants[19])*(1.00000+algebraic[0]/constants[20]))
algebraic[7] = (constants[16]*(states[12]/constants[14]-algebraic[3]/constants[15]))/(1.00000+states[12]/constants[14]+algebraic[3]/constants[15])
algebraic[11] = (constants[66]*((constants[64]*algebraic[1]*states[9])/(constants[60]*constants[61])-(constants[65]*algebraic[0]*states[10])/(constants[63]*constants[62])))/((1.00000+states[9]/constants[61]+states[10]/constants[62])*(1.00000+algebraic[1]/constants[60]+algebraic[0]/constants[63]))
algebraic[14] = ((constants[26]*states[2])/(0.00900000*(1.00000+algebraic[0]/0.680000+algebraic[1]/1.51000+(constants[22]-(algebraic[0]+algebraic[1]))/3.65000))-(constants[27]*algebraic[13]*algebraic[12])/(constants[25]*constants[23]))/(1.00000+algebraic[13]/constants[23]+algebraic[12]/constants[25]+(algebraic[13]*algebraic[12])/(constants[25]*constants[23])+states[2]/(0.00900000*(1.00000+algebraic[0]/0.680000+algebraic[1]/1.51000+(constants[22]-(algebraic[0]+algebraic[1]))/3.65000))+(states[2]*algebraic[13])/(constants[24]*0.00900000*(1.00000+algebraic[0]/0.680000+algebraic[1]/1.51000+(constants[22]-(algebraic[0]+algebraic[1]))/3.65000)))
algebraic[16] = constants[37]*((constants[35]*(algebraic[13]*((states[8]/constants[32])/constants[31])-(constants[36]/constants[35])*(((states[4]*states[7])/constants[33])/constants[34])))/((1.00000+algebraic[13]/constants[32]+states[4]/constants[33])*(1.00000+states[8]/constants[31]+states[7]/constants[34])))
algebraic[17] = (constants[44]*constants[42]*((states[7]*algebraic[12])/(constants[38]*constants[40])-(constants[43]*states[8]*states[9])/(constants[39]*constants[41]*constants[42])))/((1.00000+states[8]/constants[41]+states[7]/constants[38])*(1.00000+algebraic[12]/constants[40]+states[9]/constants[39]))
algebraic[8] = (constants[46]*states[9])/(states[9]+constants[45])
algebraic[20] = (constants[55]*constants[53]*((-constants[54]*algebraic[18]*algebraic[0])/(constants[52]*constants[51]*constants[53])+(states[4]*algebraic[1])/(constants[50]*constants[49])))/((1.00000+states[4]/constants[50]+algebraic[18]/constants[51])*(1.00000+algebraic[1]/constants[49]+algebraic[0]/constants[52]))
algebraic[21] = ((constants[58]*(power(algebraic[19]/(0.340000*(1.00000+algebraic[0]/0.570000+algebraic[1]/0.640000)), constants[57]))*algebraic[1])/constants[56])/((1.00000+power(algebraic[19]/(0.340000*(1.00000+algebraic[0]/0.570000+algebraic[1]/0.640000)), constants[57]))*(1.00000+algebraic[1]/constants[56]))
algebraic[9] = ((constants[48]*states[6])/constants[47])/(1.00000+states[6]/constants[47])
algebraic[10] = (constants[59]*algebraic[0])/algebraic[1]
algebraic[15] = (constants[30]*(algebraic[12]/constants[28]-(5.70000*algebraic[13])/constants[29]))/(1.00000+algebraic[13]/constants[29]+algebraic[12]/constants[28])
return algebraic
initialGuess0 = None
def rootfind_0(voi, constants, rates, states, algebraic):
"""Calculate values of algebraic variables for DAE"""
from scipy.optimize import fsolve
global initialGuess0
if initialGuess0 is None: initialGuess0 = ones(2)*0.1
if not iterable(voi):
soln = fsolve(residualSN_0, initialGuess0, args=(algebraic, voi, constants, rates, states), xtol=1E-6)
initialGuess0 = soln
algebraic[12] = soln[0]
algebraic[13] = soln[1]
else:
for (i,t) in enumerate(voi):
soln = fsolve(residualSN_0, initialGuess0, args=(algebraic[:,i], voi[i], constants, rates[:i], states[:,i]), xtol=1E-6)
initialGuess0 = soln
algebraic[12][i] = soln[0]
algebraic[13][i] = soln[1]
def residualSN_0(algebraicCandidate, algebraic, voi, constants, rates, states):
resid = array([0.0] * 2)
algebraic[12] = algebraicCandidate[0]
algebraic[13] = algebraicCandidate[1]
resid[0] = (algebraic[12]-(constants[3]*algebraic[12])/((constants[2]+constants[3])-(states[4]+2.00000*states[2]+algebraic[3]+algebraic[13]+states[12]+states[11])))
resid[1] = (algebraic[13]-(states[3]-algebraic[12]))
return resid
initialGuess1 = None
def rootfind_1(voi, constants, rates, states, algebraic):
"""Calculate values of algebraic variables for DAE"""
from scipy.optimize import fsolve
global initialGuess1
if initialGuess1 is None: initialGuess1 = ones(2)*0.1
if not iterable(voi):
soln = fsolve(residualSN_1, initialGuess1, args=(algebraic, voi, constants, rates, states), xtol=1E-6)
initialGuess1 = soln
algebraic[18] = soln[0]
algebraic[19] = soln[1]
else:
for (i,t) in enumerate(voi):
soln = fsolve(residualSN_1, initialGuess1, args=(algebraic[:,i], voi[i], constants, rates[:i], states[:,i]), xtol=1E-6)
initialGuess1 = soln
algebraic[18][i] = soln[0]
algebraic[19][i] = soln[1]
def residualSN_1(algebraicCandidate, algebraic, voi, constants, rates, states):
resid = array([0.0] * 2)
algebraic[18] = algebraicCandidate[0]
algebraic[19] = algebraicCandidate[1]
resid[0] = (algebraic[18]-(states[5]-algebraic[19]))
resid[1] = (algebraic[19]-constants[4]*constants[5]*algebraic[18])
return resid
def custom_piecewise(cases):
"""Compute result of a piecewise function"""
return select(cases[0::2],cases[1::2])
def solve_model():
"""Solve model with ODE solver"""
from scipy.integrate import ode
# Initialise constants and state variables
(init_states, constants) = initConsts()
# Set timespan to solve over
voi = linspace(0, 10, 500)
# Construct ODE object to solve
r = ode(computeRates)
r.set_integrator('vode', method='bdf', atol=1e-06, rtol=1e-06, max_step=1)
r.set_initial_value(init_states, voi[0])
r.set_f_params(constants)
# Solve model
states = array([[0.0] * len(voi)] * sizeStates)
states[:,0] = init_states
for (i,t) in enumerate(voi[1:]):
if r.successful():
r.integrate(t)
states[:,i+1] = r.y
else:
break
# Compute algebraic variables
algebraic = computeAlgebraic(constants, states, voi)
return (voi, states, algebraic)
def plot_model(voi, states, algebraic):
"""Plot variables against variable of integration"""
import pylab
(legend_states, legend_algebraic, legend_voi, legend_constants) = createLegends()
pylab.figure(1)
pylab.plot(voi,vstack((states,algebraic)).T)
pylab.xlabel(legend_voi)
pylab.legend(legend_states + legend_algebraic, loc='best')
pylab.show()
if __name__ == "__main__":
(voi, states, algebraic) = solve_model()
plot_model(voi, states, algebraic)