function [VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction() % This is the "main function". In Matlab, things work best if you rename this function to match the filename. [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel(); end function [algebraicVariableCount] = getAlgebraicVariableCount() % Used later when setting a global variable with the number of algebraic variables. % Note: This is not the "main method". algebraicVariableCount =179; end % There are a total of 17 entries in each of the rate and state variable arrays. % There are a total of 230 entries in the constant variable array. % function [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel() % Create ALGEBRAIC of correct size global algebraicVariableCount; algebraicVariableCount = getAlgebraicVariableCount(); % Initialise constants and state variables [INIT_STATES, CONSTANTS] = initConsts; % Set timespan to solve over tspan = [0, 10]; % Set numerical accuracy options for ODE solver options = odeset('RelTol', 1e-06, 'AbsTol', 1e-06, 'MaxStep', 1); % Solve model with ODE solver [VOI, STATES] = ode15s(@(VOI, STATES)computeRates(VOI, STATES, CONSTANTS), tspan, INIT_STATES, options); % Compute algebraic variables [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS); ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI); % Plot state variables against variable of integration [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends(); figure(); plot(VOI, STATES); xlabel(LEGEND_VOI); l = legend(LEGEND_STATES); set(l,'Interpreter','none'); end function [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends() LEGEND_STATES = ''; LEGEND_ALGEBRAIC = ''; LEGEND_VOI = ''; LEGEND_CONSTANTS = ''; LEGEND_VOI = strpad('time in component environment (day)'); LEGEND_ALGEBRAIC(:,11) = strpad('U_Pd_PdPs in component Q_Pd (mole_per_day)'); LEGEND_STATES(:,1) = strpad('Q_Pd in component Q_Pd (mole)'); LEGEND_ALGEBRAIC(:,1) = strpad('C_Pd in component Q_Pd (molar)'); LEGEND_ALGEBRAIC(:,9) = strpad('U_Pd_PdEx in component Q_Pd (mole_per_day)'); LEGEND_CONSTANTS(:,156) = strpad('P_Pd_InPd in component Q_Pd (mole_per_day)'); LEGEND_ALGEBRAIC(:,10) = strpad('v_PdPs in component Q_Pd (mole_per_day)'); LEGEND_CONSTANTS(:,1) = strpad('v_PdPs_star in component Q_Pd (mole_per_gram_day)'); LEGEND_CONSTANTS(:,175) = strpad('M_Pd_PdPs in component Q_Pd (molar)'); LEGEND_CONSTANTS(:,2) = strpad('M_Pd_PdPs_star in component Q_Pd (molar)'); LEGEND_CONSTANTS(:,3) = strpad('Y_Pd_InPd in component Q_Pd (molar)'); LEGEND_CONSTANTS(:,4) = strpad('D_Pd in component Q_Pd (litre_per_day)'); LEGEND_CONSTANTS(:,155) = strpad('k_PdEx in component Q_Pd (first_order_rate_constant)'); LEGEND_CONSTANTS(:,5) = strpad('T_Pd in component Q_Pd (day)'); LEGEND_CONSTANTS(:,6) = strpad('T_Pd_star in component Q_Pd (day)'); LEGEND_STATES(:,2) = strpad('Q_Ma in component Q_Ma (gram)'); LEGEND_STATES(:,3) = strpad('Q_Mc in component Q_Mc (gram)'); LEGEND_CONSTANTS(:,7) = strpad('V_Ru in component model_parameters (litre)'); LEGEND_CONSTANTS(:,8) = strpad('k_SoEx in component model_parameters (first_order_rate_constant)'); LEGEND_ALGEBRAIC(:,12) = strpad('C_Ps in component Q_Ps (molar)'); LEGEND_ALGEBRAIC(:,49) = strpad('U_McPs_PsAm in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,37) = strpad('U_Ps_PsMa in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,50) = strpad('U_Ps_PsMc in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,36) = strpad('U_MaPs_PsAm in component Q_Ps (mole_per_day)'); LEGEND_CONSTANTS(:,9) = strpad('M_Ha_McMa in component Q_Ps (molar)'); LEGEND_STATES(:,4) = strpad('Q_Ps in component Q_Ps (mole)'); LEGEND_CONSTANTS(:,177) = strpad('P_Ps_InPs in component Q_Ps (mole_per_day)'); LEGEND_CONSTANTS(:,180) = strpad('P_Ps_SaPs in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,13) = strpad('P_Ps_PdPs in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,63) = strpad('P_Ps_MaMd in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,79) = strpad('P_Ps_McPs in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,14) = strpad('U_Ps_PsEx in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,77) = strpad('U_Mc_McPs in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,15) = strpad('v_Ma_PsAm in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,16) = strpad('v_Mc_PsAm in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,17) = strpad('v_PsMa in component Q_Ps (mole_per_day)'); LEGEND_ALGEBRAIC(:,18) = strpad('v_PsMc in component Q_Ps (mole_per_day)'); LEGEND_CONSTANTS(:,10) = strpad('v_PsAm_star in component Q_Ps (mole_per_gram_day)'); LEGEND_CONSTANTS(:,11) = strpad('v_PsMa_star in component Q_Ps (mole_per_gram_day)'); LEGEND_CONSTANTS(:,12) = strpad('v_PsMc_star in component Q_Ps (mole_per_gram_day)'); LEGEND_CONSTANTS(:,157) = strpad('k_PsEx in component Q_Ps (first_order_rate_constant)'); LEGEND_CONSTANTS(:,13) = strpad('Y_Ps_InPs in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,14) = strpad('Y_Ps_SaPs in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,15) = strpad('Y_Ps_PdPs in component Q_Ps (dimensionless)'); LEGEND_CONSTANTS(:,16) = strpad('Y_Ps_MaMd in component Q_Ps (mole_per_gram)'); LEGEND_CONSTANTS(:,17) = strpad('Y_Ps_McPs in component Q_Ps (dimensionless)'); LEGEND_CONSTANTS(:,18) = strpad('D_Ps in component Q_Ps (litre_per_day)'); LEGEND_CONSTANTS(:,19) = strpad('M_Ps_PsAm in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,20) = strpad('M_Ps_PsMa in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,21) = strpad('M_Ps_PsMc in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,22) = strpad('M_Ha_PsMa in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,23) = strpad('M_Hc_PsMc in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,24) = strpad('J_Ha_PsAm in component Q_Ps (molar)'); LEGEND_CONSTANTS(:,25) = strpad('J_Hc_PsAm in component Q_Ps (molar)'); LEGEND_ALGEBRAIC(:,76) = strpad('U_Mc_McEg in component Q_Mc (gram_per_day)'); LEGEND_ALGEBRAIC(:,62) = strpad('U_Ma_MaMd in component Q_Ma (gram_per_day)'); LEGEND_ALGEBRAIC(:,55) = strpad('U_Hc_PsMc in component Q_Hc (mole_per_day)'); LEGEND_ALGEBRAIC(:,83) = strpad('U_Ha_McMa in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,35) = strpad('C_Ha in component Q_Ha (molar)'); LEGEND_ALGEBRAIC(:,48) = strpad('C_Hc in component Q_Hc (molar)'); LEGEND_CONSTANTS(:,26) = strpad('k_FlEx in component model_parameters (first_order_rate_constant)'); LEGEND_CONSTANTS(:,27) = strpad('J_Ha_McAm in component model_parameters (molar)'); LEGEND_STATES(:,5) = strpad('Q_Pu in component Q_Pu (mole)'); LEGEND_ALGEBRAIC(:,2) = strpad('C_Pu in component Q_Pu (molar)'); LEGEND_CONSTANTS(:,158) = strpad('P_Pu_InPu in component Q_Pu (mole_per_day)'); LEGEND_ALGEBRAIC(:,3) = strpad('U_Pu_PuEx in component Q_Pu (mole_per_day)'); LEGEND_CONSTANTS(:,28) = strpad('Y_Pu_InPu in component Q_Pu (molar)'); LEGEND_CONSTANTS(:,29) = strpad('D_Pu in component Q_Pu (litre_per_day)'); LEGEND_CONSTANTS(:,159) = strpad('k_PuEx in component Q_Pu (first_order_rate_constant)'); LEGEND_ALGEBRAIC(:,19) = strpad('C_Am in component Q_Am (molar)'); LEGEND_ALGEBRAIC(:,52) = strpad('U_Am_AmMc in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,39) = strpad('U_Am_AmMa in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,78) = strpad('U_Mc_McAm in component Q_Am (mole_per_day)'); LEGEND_STATES(:,6) = strpad('Q_Am in component Q_Am (mole)'); LEGEND_CONSTANTS(:,181) = strpad('P_Am_InAm in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,23) = strpad('P_Am_UeAm in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,38) = strpad('P_MaAm_PsAm in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,51) = strpad('P_McAm_PsAm in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,80) = strpad('P_Am_McAm in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,20) = strpad('U_Am_AmAb in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,21) = strpad('U_Am_AmEx in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,22) = strpad('v_UeAm in component Q_Am (mole_per_day)'); LEGEND_CONSTANTS(:,182) = strpad('v_AmAb in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,24) = strpad('v_AmMa in component Q_Am (mole_per_day)'); LEGEND_ALGEBRAIC(:,25) = strpad('v_AmMc in component Q_Am (mole_per_day)'); LEGEND_CONSTANTS(:,30) = strpad('v_UeAm_star in component Q_Am (mole_per_litre_day)'); LEGEND_CONSTANTS(:,31) = strpad('v_AmAb_star in component Q_Am (mole_per_litre_day)'); LEGEND_CONSTANTS(:,32) = strpad('v_AmMa_star in component Q_Am (mole_per_gram_day)'); LEGEND_CONSTANTS(:,33) = strpad('v_AmMc_star in component Q_Am (mole_per_gram_day)'); LEGEND_CONSTANTS(:,160) = strpad('k_AmEx in component Q_Am (first_order_rate_constant)'); LEGEND_CONSTANTS(:,34) = strpad('Y_Am_InAm in component Q_Am (molar)'); LEGEND_CONSTANTS(:,35) = strpad('Y_Am_UeAm in component Q_Am (dimensionless)'); LEGEND_CONSTANTS(:,36) = strpad('Y_Am_PsAm in component Q_Am (dimensionless)'); LEGEND_CONSTANTS(:,37) = strpad('Y_Am_McAm in component Q_Am (dimensionless)'); LEGEND_CONSTANTS(:,38) = strpad('M_Am_AmMa in component Q_Am (molar)'); LEGEND_CONSTANTS(:,39) = strpad('M_Am_AmMc in component Q_Am (molar)'); LEGEND_CONSTANTS(:,40) = strpad('M_Am_AmAb in component Q_Am (molar)'); LEGEND_CONSTANTS(:,41) = strpad('M_pH_AmAb in component Q_Am (dimensionless)'); LEGEND_CONSTANTS(:,42) = strpad('phi_pH_AmAb in component Q_Am (dimensionless)'); LEGEND_CONSTANTS(:,43) = strpad('M_Ha_AmMa in component Q_Am (molar)'); LEGEND_CONSTANTS(:,44) = strpad('M_Hc_AmMc in component Q_Am (molar)'); LEGEND_CONSTANTS(:,45) = strpad('J_Am_UeAm in component Q_Am (molar)'); LEGEND_CONSTANTS(:,46) = strpad('D_Am in component Q_Am (litre_per_day)'); LEGEND_CONSTANTS(:,47) = strpad('pH in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,48) = strpad('f_Po_Ma in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,49) = strpad('f_Ni_Fe in component model_parameters (dimensionless)'); LEGEND_STATES(:,7) = strpad('Q_Li in component Q_Li (mole)'); LEGEND_ALGEBRAIC(:,4) = strpad('C_Li in component Q_Li (molar)'); LEGEND_CONSTANTS(:,183) = strpad('P_Li_InLi in component Q_Li (mole_per_day)'); LEGEND_ALGEBRAIC(:,64) = strpad('P_Li_MaMd in component Q_Li (mole_per_day)'); LEGEND_ALGEBRAIC(:,26) = strpad('U_Li_LiEx in component Q_Li (mole_per_day)'); LEGEND_CONSTANTS(:,50) = strpad('Y_Li_InLi in component Q_Li (molar)'); LEGEND_CONSTANTS(:,51) = strpad('Y_Li_MaMd in component Q_Li (mole_per_gram)'); LEGEND_CONSTANTS(:,52) = strpad('D_Li in component Q_Li (litre_per_day)'); LEGEND_CONSTANTS(:,161) = strpad('k_LiEx in component Q_Li (first_order_rate_constant)'); LEGEND_ALGEBRAIC(:,30) = strpad('U_Sd_SdHa in component Q_Sd (mole_per_day)'); LEGEND_STATES(:,8) = strpad('Q_Sd in component Q_Sd (mole)'); LEGEND_ALGEBRAIC(:,27) = strpad('C_Sd in component Q_Sd (molar)'); LEGEND_CONSTANTS(:,184) = strpad('P_Sd_InSd in component Q_Sd (mole_per_day)'); LEGEND_ALGEBRAIC(:,28) = strpad('U_Sd_SdEx in component Q_Sd (mole_per_day)'); LEGEND_CONSTANTS(:,53) = strpad('Y_Sd_InSd in component Q_Sd (molar)'); LEGEND_CONSTANTS(:,54) = strpad('D_Sd in component Q_Sd (litre_per_day)'); LEGEND_CONSTANTS(:,162) = strpad('k_SdEx in component Q_Sd (first_order_rate_constant)'); LEGEND_ALGEBRAIC(:,29) = strpad('v_SdHa in component Q_Sd (mole_per_day)'); LEGEND_CONSTANTS(:,55) = strpad('v_SdHa_star in component Q_Sd (mole_per_gram_day)'); LEGEND_CONSTANTS(:,185) = strpad('M_Sd_SdHa in component Q_Sd (molar)'); LEGEND_CONSTANTS(:,56) = strpad('M_Sd_SdHa_star in component Q_Sd (molar)'); LEGEND_CONSTANTS(:,57) = strpad('T_Sd in component Q_Sd (day)'); LEGEND_CONSTANTS(:,58) = strpad('T_Sd_star in component Q_Sd (day)'); LEGEND_ALGEBRAIC(:,34) = strpad('U_Fd_FdHc in component Q_Fd (mole_per_day)'); LEGEND_STATES(:,9) = strpad('Q_Fd in component Q_Fd (mole)'); LEGEND_ALGEBRAIC(:,31) = strpad('C_Fd in component Q_Fd (molar)'); LEGEND_CONSTANTS(:,186) = strpad('P_Fd_InFd in component Q_Fd (mole_per_day)'); LEGEND_ALGEBRAIC(:,32) = strpad('U_Fd_FdEx in component Q_Fd (mole_per_day)'); LEGEND_CONSTANTS(:,59) = strpad('Y_Fd_InFd in component Q_Fd (molar)'); LEGEND_CONSTANTS(:,60) = strpad('D_Fd in component Q_Fd (litre_per_day)'); LEGEND_CONSTANTS(:,163) = strpad('k_FdEx in component Q_Fd (first_order_rate_constant)'); LEGEND_ALGEBRAIC(:,33) = strpad('v_FdHc in component Q_Fd (mole_per_day)'); LEGEND_CONSTANTS(:,61) = strpad('v_FdHc_star in component Q_Fd (mole_per_gram_day)'); LEGEND_CONSTANTS(:,187) = strpad('M_Fd_FdHc in component Q_Fd (molar)'); LEGEND_CONSTANTS(:,62) = strpad('M_Fd_FdHc_star in component Q_Fd (molar)'); LEGEND_CONSTANTS(:,63) = strpad('T_Fd in component Q_Fd (day)'); LEGEND_CONSTANTS(:,64) = strpad('T_Fd_star in component Q_Fd (day)'); LEGEND_CONSTANTS(:,65) = strpad('phi_pH_FdHc in component Q_Fd (dimensionless)'); LEGEND_CONSTANTS(:,66) = strpad('M_pH_FdHc in component Q_Fd (dimensionless)'); LEGEND_CONSTANTS(:,67) = strpad('pm in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,68) = strpad('f in component model_parameters (dimensionless)'); LEGEND_STATES(:,10) = strpad('Q_Fu in component Q_Fu (mole)'); LEGEND_ALGEBRAIC(:,5) = strpad('C_Fu in component Q_Fu (molar)'); LEGEND_CONSTANTS(:,164) = strpad('P_Fu_InFu in component Q_Fu (mole_per_day)'); LEGEND_ALGEBRAIC(:,6) = strpad('U_Fu_FuEx in component Q_Fu (mole_per_day)'); LEGEND_CONSTANTS(:,69) = strpad('Y_Fu_InFu in component Q_Fu (molar)'); LEGEND_CONSTANTS(:,70) = strpad('D_Fu in component Q_Fu (litre_per_day)'); LEGEND_CONSTANTS(:,165) = strpad('k_FuEx in component Q_Fu (first_order_rate_constant)'); LEGEND_ALGEBRAIC(:,45) = strpad('U_Ha_HaAs in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,41) = strpad('U_Ha_AmMa in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,42) = strpad('U_Ha_PsMa in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,47) = strpad('U_Ha_HaVa in component Q_Ha (mole_per_day)'); LEGEND_CONSTANTS(:,188) = strpad('P_Ha_WrHa in component Q_Ha (mole_per_day)'); LEGEND_CONSTANTS(:,190) = strpad('P_Ha_LaHa in component Q_Ha (mole_per_day)'); LEGEND_CONSTANTS(:,189) = strpad('P_Ha_SrHa in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,40) = strpad('P_Ha_SdHa in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,68) = strpad('P_Ha_MaMd in component Q_Ha (mole_per_day)'); LEGEND_STATES(:,11) = strpad('Q_Ha in component Q_Ha (mole)'); LEGEND_ALGEBRAIC(:,43) = strpad('U_Ha_HaEx in component Q_Ha (mole_per_day)'); LEGEND_CONSTANTS(:,71) = strpad('R_Ha_AmMa in component Q_Ha (dimensionless)'); LEGEND_CONSTANTS(:,72) = strpad('R_Ha_PsMa in component Q_Ha (dimensionless)'); LEGEND_CONSTANTS(:,73) = strpad('R_Ha_McMa in component Q_Ha (mole_per_gram)'); LEGEND_CONSTANTS(:,74) = strpad('M_Ha_HaAs in component Q_Ha (molar)'); LEGEND_CONSTANTS(:,75) = strpad('M_Ha_HaVa in component Q_Ha (molar)'); LEGEND_ALGEBRAIC(:,44) = strpad('v_HaAs in component Q_Ha (mole_per_day)'); LEGEND_ALGEBRAIC(:,46) = strpad('v_HaVa in component Q_Ha (mole_per_day)'); LEGEND_CONSTANTS(:,76) = strpad('v_HaAs_star in component Q_Ha (mole_per_gram_day)'); LEGEND_CONSTANTS(:,77) = strpad('v_HaVa_star in component Q_Ha (mole_per_gram_day)'); LEGEND_CONSTANTS(:,166) = strpad('k_HaEx in component Q_Ha (first_order_rate_constant)'); LEGEND_CONSTANTS(:,78) = strpad('Y_Ha_WrHa in component Q_Ha (molar)'); LEGEND_CONSTANTS(:,79) = strpad('Y_Ha_SrHa in component Q_Ha (molar)'); LEGEND_CONSTANTS(:,80) = strpad('Y_Ha_LaHa in component Q_Ha (molar)'); LEGEND_CONSTANTS(:,81) = strpad('Y_Ha_SdHa in component Q_Ha (dimensionless)'); LEGEND_CONSTANTS(:,82) = strpad('Y_Ha_MaMd in component Q_Ha (mole_per_gram)'); LEGEND_CONSTANTS(:,83) = strpad('D_Wr in component Q_Ha (litre_per_day)'); LEGEND_CONSTANTS(:,84) = strpad('D_Sr in component Q_Ha (litre_per_day)'); LEGEND_CONSTANTS(:,85) = strpad('D_La in component Q_Ha (litre_per_day)'); LEGEND_CONSTANTS(:,86) = strpad('J_Am_HaVa in component Q_Ha (molar)'); LEGEND_CONSTANTS(:,87) = strpad('J_Ps_HaVa in component Q_Ha (molar)'); LEGEND_ALGEBRAIC(:,67) = strpad('U_As_MaMd in component Q_As (gram_per_day)'); LEGEND_ALGEBRAIC(:,81) = strpad('U_Mc_McMa in component Q_Ma (gram_per_day)'); LEGEND_ALGEBRAIC(:,54) = strpad('U_Hc_AmMc in component Q_Hc (mole_per_day)'); LEGEND_ALGEBRAIC(:,58) = strpad('U_Hc_HcVa in component Q_Hc (mole_per_day)'); LEGEND_STATES(:,12) = strpad('Q_Hc in component Q_Hc (mole)'); LEGEND_ALGEBRAIC(:,53) = strpad('P_Hc_FdHc in component Q_Hc (mole_per_day)'); LEGEND_ALGEBRAIC(:,56) = strpad('U_Hc_HcEx in component Q_Hc (mole_per_day)'); LEGEND_CONSTANTS(:,88) = strpad('R_Hc_AmMc in component Q_Hc (dimensionless)'); LEGEND_CONSTANTS(:,89) = strpad('R_Hc_PsMc in component Q_Hc (dimensionless)'); LEGEND_ALGEBRAIC(:,57) = strpad('v_HcVa in component Q_Hc (mole_per_day)'); LEGEND_CONSTANTS(:,90) = strpad('v_HcVa_star in component Q_Hc (mole_per_gram_day)'); LEGEND_CONSTANTS(:,167) = strpad('k_HcEx in component Q_Hc (first_order_rate_constant)'); LEGEND_CONSTANTS(:,91) = strpad('Y_Hc_FdHc in component Q_Hc (dimensionless)'); LEGEND_CONSTANTS(:,92) = strpad('M_Hc_HcVa in component Q_Hc (molar)'); LEGEND_CONSTANTS(:,93) = strpad('J_Am_HcVa in component Q_Hc (molar)'); LEGEND_CONSTANTS(:,94) = strpad('J_Ps_HcVa in component Q_Hc (molar)'); LEGEND_ALGEBRAIC(:,59) = strpad('C_Ma in component Q_Ma (gram_per_litre)'); LEGEND_ALGEBRAIC(:,60) = strpad('P_Ma_AmMa in component Q_Ma (gram_per_day)'); LEGEND_ALGEBRAIC(:,61) = strpad('P_Ma_PsMa in component Q_Ma (gram_per_day)'); LEGEND_ALGEBRAIC(:,82) = strpad('P_Ma_McMa in component Q_Ma (gram_per_day)'); LEGEND_ALGEBRAIC(:,65) = strpad('U_Ma_PoEx in component Q_Ma (gram_per_day)'); LEGEND_ALGEBRAIC(:,7) = strpad('U_Ma_MaEx in component Q_Ma (gram_per_day)'); LEGEND_CONSTANTS(:,178) = strpad('k_MaMd in component Q_Ma (first_order_rate_constant)'); LEGEND_CONSTANTS(:,95) = strpad('Y_Ma_AmMa in component Q_Ma (gram_per_mole)'); LEGEND_CONSTANTS(:,96) = strpad('Y_Ma_PsMa in component Q_Ma (gram_per_mole)'); LEGEND_CONSTANTS(:,97) = strpad('Y_Ma_McMa in component Q_Ma (dimensionless)'); LEGEND_CONSTANTS(:,168) = strpad('k_MaEx in component model_parameters (first_order_rate_constant)'); LEGEND_CONSTANTS(:,176) = strpad('k_PoEx in component model_parameters (first_order_rate_constant)'); LEGEND_STATES(:,13) = strpad('Q_As in component Q_As (gram)'); LEGEND_ALGEBRAIC(:,8) = strpad('C_As in component Q_As (gram_per_litre)'); LEGEND_ALGEBRAIC(:,66) = strpad('P_As_HaAs in component Q_As (gram_per_day)'); LEGEND_ALGEBRAIC(:,71) = strpad('U_As_PoEx in component Q_As (gram_per_day)'); LEGEND_ALGEBRAIC(:,69) = strpad('U_As_AsEx in component Q_As (gram_per_day)'); LEGEND_CONSTANTS(:,169) = strpad('k_AsEx in component Q_As (first_order_rate_constant)'); LEGEND_CONSTANTS(:,179) = strpad('k_AsMd in component Q_As (first_order_rate_constant)'); LEGEND_CONSTANTS(:,98) = strpad('Y_As_HaAs in component Q_As (gram_per_mole)'); LEGEND_ALGEBRAIC(:,70) = strpad('C_Mc in component Q_Mc (gram_per_litre)'); LEGEND_ALGEBRAIC(:,72) = strpad('P_Mc_AmMc in component Q_Mc (gram_per_day)'); LEGEND_ALGEBRAIC(:,73) = strpad('P_Mc_PsMc in component Q_Mc (gram_per_day)'); LEGEND_ALGEBRAIC(:,74) = strpad('U_Mc_McEx in component Q_Mc (gram_per_day)'); LEGEND_CONSTANTS(:,170) = strpad('k_McEx in component Q_Mc (first_order_rate_constant)'); LEGEND_CONSTANTS(:,99) = strpad('Y_Mc_AmMc in component Q_Mc (gram_per_mole)'); LEGEND_CONSTANTS(:,100) = strpad('Y_Mc_PsMc in component Q_Mc (gram_per_mole)'); LEGEND_ALGEBRAIC(:,75) = strpad('v_McEg in component Q_Mc (gram_per_day)'); LEGEND_CONSTANTS(:,101) = strpad('v_McEg_star in component Q_Mc (first_order_rate_constant)'); LEGEND_CONSTANTS(:,102) = strpad('M_Mc_McEg in component Q_Mc (gram_per_litre)'); LEGEND_STATES(:,14) = strpad('Q_Ac in component Q_Ac (mole)'); LEGEND_ALGEBRAIC(:,84) = strpad('C_Ac in component Q_Ac (molar)'); LEGEND_CONSTANTS(:,191) = strpad('P_Ac_InAc in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,160) = strpad('P_Ac_AmMa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,120) = strpad('P_Ac_AmMc in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,168) = strpad('P_Ac_PsMa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,132) = strpad('P_Ac_PsMc in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,176) = strpad('P_Ac_HaAs in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,152) = strpad('P_Ac_HaVa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,88) = strpad('P_Ac_HcVa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,92) = strpad('P_MaAc_PsAm in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,96) = strpad('P_McAc_PsAm in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,144) = strpad('P_Ac_McMa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,100) = strpad('P_Ac_McAm in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,104) = strpad('U_Ac_AcAb in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,108) = strpad('U_Ac_AcEx in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,112) = strpad('U_Hf_AmMa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,116) = strpad('U_Hf_AmMc in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,124) = strpad('U_Hf_PsMa in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,128) = strpad('U_Hf_PsMc in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,136) = strpad('U_Hf_HaAs in component Q_Ac (mole_per_day)'); LEGEND_ALGEBRAIC(:,140) = strpad('U_Hf_McMa in component Q_Ac (mole_per_day)'); LEGEND_CONSTANTS(:,103) = strpad('M_Ac_AcAb in component Q_Ac (molar)'); LEGEND_CONSTANTS(:,200) = strpad('v_AcAb in component Q_Ac (mole_per_day)'); LEGEND_CONSTANTS(:,104) = strpad('v_AcAb_star in component Q_Ac (mole_per_litre_day)'); LEGEND_CONSTANTS(:,192) = strpad('Y_Ac_LaAc in component Q_Ac (dimensionless)'); LEGEND_ALGEBRAIC(:,148) = strpad('Y_Ac_HaVa in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,194) = strpad('Y_Ac_PsVa in component Q_Ac (dimensionless)'); LEGEND_ALGEBRAIC(:,156) = strpad('Y_Ac_AmMa in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,195) = strpad('Y_Ac_AmMc in component Q_Ac (dimensionless)'); LEGEND_ALGEBRAIC(:,164) = strpad('Y_Ac_PsMa in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,196) = strpad('Y_Ac_PsMc in component Q_Ac (dimensionless)'); LEGEND_ALGEBRAIC(:,172) = strpad('Y_Ac_HaAs in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,197) = strpad('Y_Ac_McMa in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,198) = strpad('Y_Ac_PsAm in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,199) = strpad('Y_Ac_McAm in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,105) = strpad('Y_Ac_WrAc in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,106) = strpad('Y_Ac_InAc in component Q_Ac (molar)'); LEGEND_CONSTANTS(:,107) = strpad('Y_Ac_StAc in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,108) = strpad('Y_Ac_CeAc in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,109) = strpad('Y_Ac_HeAc in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,110) = strpad('Y_Ac_PsAc in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,193) = strpad('Y_Ac_HcVa in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,171) = strpad('k_AcEx in component Q_Ac (first_order_rate_constant)'); LEGEND_CONSTANTS(:,111) = strpad('D_Ac in component Q_Ac (litre_per_day)'); LEGEND_CONSTANTS(:,112) = strpad('J_pH_AcAb in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,113) = strpad('phi_pH_AcAb in component Q_Ac (dimensionless)'); LEGEND_CONSTANTS(:,114) = strpad('f_Hf_AmMa in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,115) = strpad('f_Hf_AmMc in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,116) = strpad('f_Hf_PsMa in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,117) = strpad('f_Hf_PsMc in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,118) = strpad('f_Hf_HaAs in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,119) = strpad('f_Hf_McMa in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,120) = strpad('f_Lc_Le in component model_parameters (dimensionless)'); LEGEND_CONSTANTS(:,121) = strpad('f_Ce_Fd in component model_parameters (dimensionless)'); LEGEND_STATES(:,15) = strpad('Q_Pr in component Q_Pr (mole)'); LEGEND_ALGEBRAIC(:,85) = strpad('C_Pr in component Q_Pr (molar)'); LEGEND_CONSTANTS(:,201) = strpad('P_Pr_InPr in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,161) = strpad('P_Pr_AmMa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,121) = strpad('P_Pr_AmMc in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,169) = strpad('P_Pr_PsMa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,133) = strpad('P_Pr_PsMc in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,177) = strpad('P_Pr_HaAs in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,153) = strpad('P_Pr_HaVa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,89) = strpad('P_Pr_HcVa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,93) = strpad('P_MaPr_PsAm in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,97) = strpad('P_McPr_PsAm in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,145) = strpad('P_Pr_McMa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,101) = strpad('P_Pr_McAm in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,105) = strpad('U_Pr_PrAb in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,109) = strpad('U_Pr_PrEx in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,113) = strpad('U_Hf_AmMa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,117) = strpad('U_Hf_AmMc in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,125) = strpad('U_Hf_PsMa in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,129) = strpad('U_Hf_PsMc in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,137) = strpad('U_Hf_HaAs in component Q_Pr (mole_per_day)'); LEGEND_ALGEBRAIC(:,141) = strpad('U_Hf_McMa in component Q_Pr (mole_per_day)'); LEGEND_CONSTANTS(:,122) = strpad('M_Pr_PrAb in component Q_Pr (molar)'); LEGEND_CONSTANTS(:,210) = strpad('v_PrAb in component Q_Pr (mole_per_day)'); LEGEND_CONSTANTS(:,123) = strpad('v_PrAb_star in component Q_Pr (mole_per_litre_day)'); LEGEND_CONSTANTS(:,202) = strpad('Y_Pr_LaPr in component Q_Pr (dimensionless)'); LEGEND_ALGEBRAIC(:,149) = strpad('Y_Pr_HaVa in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,204) = strpad('Y_Pr_PsVa in component Q_Pr (dimensionless)'); LEGEND_ALGEBRAIC(:,157) = strpad('Y_Pr_AmMa in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,205) = strpad('Y_Pr_AmMc in component Q_Pr (dimensionless)'); LEGEND_ALGEBRAIC(:,165) = strpad('Y_Pr_PsMa in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,206) = strpad('Y_Pr_PsMc in component Q_Pr (dimensionless)'); LEGEND_ALGEBRAIC(:,173) = strpad('Y_Pr_HaAs in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,207) = strpad('Y_Pr_McMa in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,208) = strpad('Y_Pr_PsAm in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,209) = strpad('Y_Pr_McAm in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,124) = strpad('Y_Pr_WrPr in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,125) = strpad('Y_Pr_InPr in component Q_Pr (molar)'); LEGEND_CONSTANTS(:,203) = strpad('Y_Pr_HcVa in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,126) = strpad('Y_Pr_StPr in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,127) = strpad('Y_Pr_CePr in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,128) = strpad('Y_Pr_HePr in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,129) = strpad('Y_Pr_PsPr in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,172) = strpad('k_PrEx in component Q_Pr (first_order_rate_constant)'); LEGEND_CONSTANTS(:,130) = strpad('D_Pr in component Q_Pr (litre_per_day)'); LEGEND_CONSTANTS(:,131) = strpad('phi_pH_PrAb in component Q_Pr (dimensionless)'); LEGEND_CONSTANTS(:,132) = strpad('J_pH_PrAb in component Q_Pr (dimensionless)'); LEGEND_STATES(:,16) = strpad('Q_Bu in component Q_Bu (mole)'); LEGEND_ALGEBRAIC(:,86) = strpad('C_Bu in component Q_Bu (molar)'); LEGEND_CONSTANTS(:,211) = strpad('P_Bu_InBu in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,162) = strpad('P_Bu_AmMa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,122) = strpad('P_Bu_AmMc in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,170) = strpad('P_Bu_PsMa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,134) = strpad('P_Bu_PsMc in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,178) = strpad('P_Bu_HaAs in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,154) = strpad('P_Bu_HaVa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,90) = strpad('P_Bu_HcVa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,94) = strpad('P_MaBu_PsAm in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,98) = strpad('P_McBu_PsAm in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,146) = strpad('P_Bu_McMa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,102) = strpad('P_Bu_McAm in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,106) = strpad('U_Bu_BuAb in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,110) = strpad('U_Bu_BuEx in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,114) = strpad('U_Hf_AmMa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,118) = strpad('U_Hf_AmMc in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,126) = strpad('U_Hf_PsMa in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,130) = strpad('U_Hf_PsMc in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,138) = strpad('U_Hf_HaAs in component Q_Bu (mole_per_day)'); LEGEND_ALGEBRAIC(:,142) = strpad('U_Hf_McMa in component Q_Bu (mole_per_day)'); LEGEND_CONSTANTS(:,133) = strpad('M_Bu_BuAb in component Q_Bu (molar)'); LEGEND_CONSTANTS(:,220) = strpad('v_BuAb in component Q_Bu (mole_per_day)'); LEGEND_CONSTANTS(:,134) = strpad('v_BuAb_star in component Q_Bu (mole_per_litre_day)'); LEGEND_CONSTANTS(:,212) = strpad('Y_Bu_LaBu in component Q_Bu (dimensionless)'); LEGEND_ALGEBRAIC(:,150) = strpad('Y_Bu_HaVa in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,214) = strpad('Y_Bu_PsVa in component Q_Bu (dimensionless)'); LEGEND_ALGEBRAIC(:,158) = strpad('Y_Bu_AmMa in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,215) = strpad('Y_Bu_AmMc in component Q_Bu (dimensionless)'); LEGEND_ALGEBRAIC(:,166) = strpad('Y_Bu_PsMa in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,216) = strpad('Y_Bu_PsMc in component Q_Bu (dimensionless)'); LEGEND_ALGEBRAIC(:,174) = strpad('Y_Bu_HaAs in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,217) = strpad('Y_Bu_McMa in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,218) = strpad('Y_Bu_PsAm in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,219) = strpad('Y_Bu_McAm in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,135) = strpad('Y_Bu_WrBu in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,136) = strpad('Y_Bu_InBu in component Q_Bu (molar)'); LEGEND_CONSTANTS(:,213) = strpad('Y_Bu_HcVa in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,137) = strpad('Y_Bu_StBu in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,138) = strpad('Y_Bu_CeBu in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,139) = strpad('Y_Bu_HeBu in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,140) = strpad('Y_Bu_PsBu in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,173) = strpad('k_BuEx in component Q_Bu (first_order_rate_constant)'); LEGEND_CONSTANTS(:,141) = strpad('D_Bu in component Q_Bu (litre_per_day)'); LEGEND_CONSTANTS(:,142) = strpad('phi_pH_BuAb in component Q_Bu (dimensionless)'); LEGEND_CONSTANTS(:,143) = strpad('J_pH_BuAb in component Q_Bu (dimensionless)'); LEGEND_STATES(:,17) = strpad('Q_Vl in component Q_Vl (mole)'); LEGEND_ALGEBRAIC(:,87) = strpad('C_Vl in component Q_Vl (molar)'); LEGEND_CONSTANTS(:,221) = strpad('P_Vl_InVl in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,163) = strpad('P_Vl_AmMa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,123) = strpad('P_Vl_AmMc in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,171) = strpad('P_Vl_PsMa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,135) = strpad('P_Vl_PsMc in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,179) = strpad('P_Vl_HaAs in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,155) = strpad('P_Vl_HaVa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,91) = strpad('P_Vl_HcVa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,95) = strpad('P_MaVl_PsAm in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,99) = strpad('P_McVl_PsAm in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,147) = strpad('P_Vl_McMa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,103) = strpad('P_Vl_McAm in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,107) = strpad('U_Vl_VlAb in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,111) = strpad('U_Vl_VlEx in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,115) = strpad('U_Hf_AmMa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,119) = strpad('U_Hf_AmMc in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,127) = strpad('U_Hf_PsMa in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,131) = strpad('U_Hf_PsMc in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,139) = strpad('U_Hf_HaAs in component Q_Vl (mole_per_day)'); LEGEND_ALGEBRAIC(:,143) = strpad('U_Hf_McMa in component Q_Vl (mole_per_day)'); LEGEND_CONSTANTS(:,144) = strpad('M_Vl_VlAb in component Q_Vl (molar)'); LEGEND_CONSTANTS(:,230) = strpad('v_VlAb in component Q_Vl (mole_per_day)'); LEGEND_CONSTANTS(:,145) = strpad('v_VlAb_star in component Q_Vl (mole_per_litre_day)'); LEGEND_CONSTANTS(:,222) = strpad('Y_Vl_LaVl in component Q_Vl (dimensionless)'); LEGEND_ALGEBRAIC(:,151) = strpad('Y_Vl_HaVa in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,224) = strpad('Y_Vl_PsVa in component Q_Vl (dimensionless)'); LEGEND_ALGEBRAIC(:,159) = strpad('Y_Vl_AmMa in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,225) = strpad('Y_Vl_AmMc in component Q_Vl (dimensionless)'); LEGEND_ALGEBRAIC(:,167) = strpad('Y_Vl_PsMa in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,226) = strpad('Y_Vl_PsMc in component Q_Vl (dimensionless)'); LEGEND_ALGEBRAIC(:,175) = strpad('Y_Vl_HaAs in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,227) = strpad('Y_Vl_McMa in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,228) = strpad('Y_Vl_PsAm in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,229) = strpad('Y_Vl_McAm in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,146) = strpad('Y_Vl_WrVl in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,147) = strpad('Y_Vl_InVl in component Q_Vl (molar)'); LEGEND_CONSTANTS(:,223) = strpad('Y_Vl_HcVa in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,148) = strpad('Y_Vl_StVl in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,149) = strpad('Y_Vl_CeVl in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,150) = strpad('Y_Vl_HeVl in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,151) = strpad('Y_Vl_PsVl in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,174) = strpad('k_VlEx in component Q_Vl (first_order_rate_constant)'); LEGEND_CONSTANTS(:,152) = strpad('D_Vl in component Q_Vl (litre_per_day)'); LEGEND_CONSTANTS(:,153) = strpad('phi_pH_VlAb in component Q_Vl (dimensionless)'); LEGEND_CONSTANTS(:,154) = strpad('J_pH_VlAb in component Q_Vl (dimensionless)'); LEGEND_RATES(:,1) = strpad('d/dt Q_Pd in component Q_Pd (mole)'); LEGEND_RATES(:,4) = strpad('d/dt Q_Ps in component Q_Ps (mole)'); LEGEND_RATES(:,5) = strpad('d/dt Q_Pu in component Q_Pu (mole)'); LEGEND_RATES(:,6) = strpad('d/dt Q_Am in component Q_Am (mole)'); LEGEND_RATES(:,7) = strpad('d/dt Q_Li in component Q_Li (mole)'); LEGEND_RATES(:,8) = strpad('d/dt Q_Sd in component Q_Sd (mole)'); LEGEND_RATES(:,9) = strpad('d/dt Q_Fd in component Q_Fd (mole)'); LEGEND_RATES(:,10) = strpad('d/dt Q_Fu in component Q_Fu (mole)'); LEGEND_RATES(:,11) = strpad('d/dt Q_Ha in component Q_Ha (mole)'); LEGEND_RATES(:,12) = strpad('d/dt Q_Hc in component Q_Hc (mole)'); LEGEND_RATES(:,2) = strpad('d/dt Q_Ma in component Q_Ma (gram)'); LEGEND_RATES(:,13) = strpad('d/dt Q_As in component Q_As (gram)'); LEGEND_RATES(:,3) = strpad('d/dt Q_Mc in component Q_Mc (gram)'); LEGEND_RATES(:,14) = strpad('d/dt Q_Ac in component Q_Ac (mole)'); LEGEND_RATES(:,15) = strpad('d/dt Q_Pr in component Q_Pr (mole)'); LEGEND_RATES(:,16) = strpad('d/dt Q_Bu in component Q_Bu (mole)'); LEGEND_RATES(:,17) = strpad('d/dt Q_Vl in component Q_Vl (mole)'); LEGEND_STATES = LEGEND_STATES'; LEGEND_ALGEBRAIC = LEGEND_ALGEBRAIC'; LEGEND_RATES = LEGEND_RATES'; LEGEND_CONSTANTS = LEGEND_CONSTANTS'; end function [STATES, CONSTANTS] = initConsts() VOI = 0; CONSTANTS = []; STATES = []; ALGEBRAIC = []; STATES(:,1) = 1.000; CONSTANTS(:,1) = 0.0576; CONSTANTS(:,2) = 0.264; CONSTANTS(:,3) = 0.0091; CONSTANTS(:,4) = 1.000; CONSTANTS(:,5) = 1.000; CONSTANTS(:,6) = 0.66; STATES(:,2) = 1.000; STATES(:,3) = 1.000; CONSTANTS(:,7) = 1.000; CONSTANTS(:,8) = 1.000; CONSTANTS(:,9) = 0.0248; STATES(:,4) = 1.000; CONSTANTS(:,10) = 0.0144; CONSTANTS(:,11) = 0.0576; CONSTANTS(:,12) = 0.0576; CONSTANTS(:,13) = 0.0091; CONSTANTS(:,14) = 0.0010; CONSTANTS(:,15) = 1.0; CONSTANTS(:,16) = 0.0067; CONSTANTS(:,17) = 0.0067; CONSTANTS(:,18) = 1.000; CONSTANTS(:,19) = 0.0289; CONSTANTS(:,20) = 0.0224; CONSTANTS(:,21) = 0.0224; CONSTANTS(:,22) = 0.0248; CONSTANTS(:,23) = 0.0248; CONSTANTS(:,24) = 0.0165; CONSTANTS(:,25) = 0.0165; CONSTANTS(:,26) = 1.000; CONSTANTS(:,27) = 0.0165; STATES(:,5) = 1.000; CONSTANTS(:,28) = 0.0091; CONSTANTS(:,29) = 1.000; STATES(:,6) = 1.000; CONSTANTS(:,30) = 0.00165; CONSTANTS(:,31) = 1.10; CONSTANTS(:,32) = 0.0528; CONSTANTS(:,33) = 0.0528; CONSTANTS(:,34) = 0.0588; CONSTANTS(:,35) = 2.0; CONSTANTS(:,36) = 1.257; CONSTANTS(:,37) = 0.0084; CONSTANTS(:,38) = 0.00135; CONSTANTS(:,39) = 0.00135; CONSTANTS(:,40) = 0.0132; CONSTANTS(:,41) = 7.5; CONSTANTS(:,42) = 7.85; CONSTANTS(:,43) = 0.0159; CONSTANTS(:,44) = 0.0159; CONSTANTS(:,45) = 0.00621; CONSTANTS(:,46) = 1.000; CONSTANTS(:,47) = 7.000; CONSTANTS(:,48) = 0.35; CONSTANTS(:,49) = 1.000; STATES(:,7) = 1.000; CONSTANTS(:,50) = 0.0015; CONSTANTS(:,51) = 0.00021; CONSTANTS(:,52) = 1.000; STATES(:,8) = 1.000; CONSTANTS(:,53) = 0.0062; CONSTANTS(:,54) = 1.000; CONSTANTS(:,55) = 0.2179; CONSTANTS(:,56) = 0.416; CONSTANTS(:,57) = 1.000; CONSTANTS(:,58) = 1.04; STATES(:,9) = 1.000; CONSTANTS(:,59) = 0.0062; CONSTANTS(:,60) = 1.000; CONSTANTS(:,61) = 0.1646; CONSTANTS(:,62) = 0.332; CONSTANTS(:,63) = 1.000; CONSTANTS(:,64) = 0.83; CONSTANTS(:,65) = 22.9; CONSTANTS(:,66) = 5.97; CONSTANTS(:,67) = 1.000; CONSTANTS(:,68) = 1.000; STATES(:,10) = 1.000; CONSTANTS(:,69) = 0.0062; CONSTANTS(:,70) = 1.000; STATES(:,11) = 1.000; CONSTANTS(:,71) = 1.793; CONSTANTS(:,72) = 1.291; CONSTANTS(:,73) = 0.0086; CONSTANTS(:,74) = 0.0268; CONSTANTS(:,75) = 0.055; CONSTANTS(:,76) = 0.053; CONSTANTS(:,77) = 0.1646; CONSTANTS(:,78) = 0.0062; CONSTANTS(:,79) = 0.0062; CONSTANTS(:,80) = 0.0025; CONSTANTS(:,81) = 1.0; CONSTANTS(:,82) = 0.0062; CONSTANTS(:,83) = 1.000; CONSTANTS(:,84) = 1.000; CONSTANTS(:,85) = 1.000; CONSTANTS(:,86) = 0.00861; CONSTANTS(:,87) = 0.01465; STATES(:,12) = 1.000; CONSTANTS(:,88) = 1.793; CONSTANTS(:,89) = 1.291; CONSTANTS(:,90) = 0.1646; CONSTANTS(:,91) = 1.0; CONSTANTS(:,92) = 0.055; CONSTANTS(:,93) = 0.00861; CONSTANTS(:,94) = 0.01465; CONSTANTS(:,95) = 118.91; CONSTANTS(:,96) = 149.48; CONSTANTS(:,97) = 149.48; STATES(:,13) = 1.000; CONSTANTS(:,98) = 112.5; CONSTANTS(:,99) = 118.91; CONSTANTS(:,100) = 149.48; CONSTANTS(:,101) = 15.439; CONSTANTS(:,102) = 34.694; STATES(:,14) = 1.000; CONSTANTS(:,103) = 0.338; CONSTANTS(:,104) = 7.86; CONSTANTS(:,105) = 1.000; CONSTANTS(:,106) = 0.0167; CONSTANTS(:,107) = 1.000; CONSTANTS(:,108) = 1.000; CONSTANTS(:,109) = 1.000; CONSTANTS(:,110) = 1.000; CONSTANTS(:,111) = 1.000; CONSTANTS(:,112) = 6.45; CONSTANTS(:,113) = 6.48; CONSTANTS(:,114) = 0.526; CONSTANTS(:,115) = 0.526; CONSTANTS(:,116) = 0.711; CONSTANTS(:,117) = 0.711; CONSTANTS(:,118) = 0.306; CONSTANTS(:,119) = 0.711; CONSTANTS(:,120) = 2.250; CONSTANTS(:,121) = 1.000; STATES(:,15) = 1.000; CONSTANTS(:,122) = 0.338; CONSTANTS(:,123) = 7.86; CONSTANTS(:,124) = 1.000; CONSTANTS(:,125) = 0.0135; CONSTANTS(:,126) = 1.000; CONSTANTS(:,127) = 1.000; CONSTANTS(:,128) = 1.000; CONSTANTS(:,129) = 1.000; CONSTANTS(:,130) = 1.000; CONSTANTS(:,131) = 6.48; CONSTANTS(:,132) = 6.45; STATES(:,16) = 1.000; CONSTANTS(:,133) = 0.338; CONSTANTS(:,134) = 7.86; CONSTANTS(:,135) = 1.000; CONSTANTS(:,136) = 0.0114; CONSTANTS(:,137) = 1.000; CONSTANTS(:,138) = 1.000; CONSTANTS(:,139) = 1.000; CONSTANTS(:,140) = 1.000; CONSTANTS(:,141) = 1.000; CONSTANTS(:,142) = 6.48; CONSTANTS(:,143) = 6.45; STATES(:,17) = 1.000; CONSTANTS(:,144) = 0.338; CONSTANTS(:,145) = 7.86; CONSTANTS(:,146) = 1.000; CONSTANTS(:,147) = 0.0098; CONSTANTS(:,148) = 1.000; CONSTANTS(:,149) = 1.000; CONSTANTS(:,150) = 1.000; CONSTANTS(:,151) = 1.000; CONSTANTS(:,152) = 1.000; CONSTANTS(:,153) = 6.48; CONSTANTS(:,154) = 6.45; CONSTANTS(:,155) = CONSTANTS(:,8); CONSTANTS(:,156) = CONSTANTS(:,3).*CONSTANTS(:,4); CONSTANTS(:,157) = CONSTANTS(:,26); CONSTANTS(:,158) = CONSTANTS(:,28).*CONSTANTS(:,29); CONSTANTS(:,159) = CONSTANTS(:,8); CONSTANTS(:,160) = CONSTANTS(:,26); CONSTANTS(:,161) = CONSTANTS(:,26); CONSTANTS(:,162) = CONSTANTS(:,8); CONSTANTS(:,163) = CONSTANTS(:,8); CONSTANTS(:,164) = CONSTANTS(:,69).*CONSTANTS(:,70); CONSTANTS(:,165) = CONSTANTS(:,8); CONSTANTS(:,166) = CONSTANTS(:,26); CONSTANTS(:,167) = CONSTANTS(:,26); CONSTANTS(:,168) = CONSTANTS(:,26); CONSTANTS(:,169) = CONSTANTS(:,26); CONSTANTS(:,170) = CONSTANTS(:,8); CONSTANTS(:,171) = CONSTANTS(:,26); CONSTANTS(:,172) = CONSTANTS(:,26); CONSTANTS(:,173) = CONSTANTS(:,26); CONSTANTS(:,174) = CONSTANTS(:,26); CONSTANTS(:,175) = CONSTANTS(:,2).*(CONSTANTS(:,5)./CONSTANTS(:,6)); CONSTANTS(:,176) = CONSTANTS(:,8)./2.00000; CONSTANTS(:,177) = CONSTANTS(:,13).*CONSTANTS(:,18); CONSTANTS(:,178) = CONSTANTS(:,168) - CONSTANTS(:,176); CONSTANTS(:,179) = CONSTANTS(:,168) - CONSTANTS(:,176); CONSTANTS(:,180) = CONSTANTS(:,14).*CONSTANTS(:,18); CONSTANTS(:,181) = CONSTANTS(:,34).*CONSTANTS(:,46); CONSTANTS(:,182) = CONSTANTS(:,31).*power(1.00000, 0.250000).*power(CONSTANTS(:,7), 0.750000).*(1.00000+power(CONSTANTS(:,41)./CONSTANTS(:,47), CONSTANTS(:,42))); CONSTANTS(:,183) = CONSTANTS(:,50).*CONSTANTS(:,52); CONSTANTS(:,184) = CONSTANTS(:,53).*CONSTANTS(:,54); CONSTANTS(:,185) = CONSTANTS(:,56).*(CONSTANTS(:,57)./CONSTANTS(:,58)); CONSTANTS(:,186) = CONSTANTS(:,59).*CONSTANTS(:,60); CONSTANTS(:,187) = CONSTANTS(:,62).*(CONSTANTS(:,63)./CONSTANTS(:,64)); CONSTANTS(:,188) = CONSTANTS(:,78).*CONSTANTS(:,83); CONSTANTS(:,189) = CONSTANTS(:,79).*CONSTANTS(:,84); CONSTANTS(:,190) = CONSTANTS(:,80).*CONSTANTS(:,85); CONSTANTS(:,191) = CONSTANTS(:,106).*CONSTANTS(:,111); CONSTANTS(:,192) = CONSTANTS(:,120).*CONSTANTS(:,105); CONSTANTS(:,193) = CONSTANTS(:,121).*CONSTANTS(:,108)+ (1.00000 - CONSTANTS(:,121)).*CONSTANTS(:,109); CONSTANTS(:,194) = CONSTANTS(:,110); CONSTANTS(:,195) = CONSTANTS(:,193); CONSTANTS(:,196) = CONSTANTS(:,193); CONSTANTS(:,197) = CONSTANTS(:,193); CONSTANTS(:,198) = CONSTANTS(:,194); CONSTANTS(:,199) = CONSTANTS(:,194); CONSTANTS(:,200) = CONSTANTS(:,104).*power(1.00000, 0.250000).*(power(CONSTANTS(:,7), 0.750000)./(1.00000+power(CONSTANTS(:,47)./CONSTANTS(:,112), CONSTANTS(:,113)))); CONSTANTS(:,201) = CONSTANTS(:,125).*CONSTANTS(:,130); CONSTANTS(:,202) = CONSTANTS(:,120).*CONSTANTS(:,124); CONSTANTS(:,203) = CONSTANTS(:,121).*CONSTANTS(:,127)+ (1.00000 - CONSTANTS(:,121)).*CONSTANTS(:,128); CONSTANTS(:,204) = CONSTANTS(:,129); CONSTANTS(:,205) = CONSTANTS(:,203); CONSTANTS(:,206) = CONSTANTS(:,203); CONSTANTS(:,207) = CONSTANTS(:,203); CONSTANTS(:,208) = CONSTANTS(:,204); CONSTANTS(:,209) = CONSTANTS(:,204); CONSTANTS(:,210) = CONSTANTS(:,123).*power(1.00000, 0.250000).*(power(CONSTANTS(:,7), 0.750000)./(1.00000+power(CONSTANTS(:,47)./CONSTANTS(:,132), CONSTANTS(:,131)))); CONSTANTS(:,211) = CONSTANTS(:,136).*CONSTANTS(:,141); CONSTANTS(:,212) = CONSTANTS(:,120).*CONSTANTS(:,135); CONSTANTS(:,213) = CONSTANTS(:,121).*CONSTANTS(:,138)+ (1.00000 - CONSTANTS(:,121)).*CONSTANTS(:,139); CONSTANTS(:,214) = CONSTANTS(:,140); CONSTANTS(:,215) = CONSTANTS(:,213); CONSTANTS(:,216) = CONSTANTS(:,213); CONSTANTS(:,217) = CONSTANTS(:,213); CONSTANTS(:,218) = CONSTANTS(:,214); CONSTANTS(:,219) = CONSTANTS(:,214); CONSTANTS(:,220) = CONSTANTS(:,134).*power(1.00000, 0.250000).*(power(CONSTANTS(:,7), 0.750000)./(1.00000+power(CONSTANTS(:,47)./CONSTANTS(:,143), CONSTANTS(:,142)))); CONSTANTS(:,221) = CONSTANTS(:,147).*CONSTANTS(:,152); CONSTANTS(:,222) = CONSTANTS(:,120).*CONSTANTS(:,146); CONSTANTS(:,223) = CONSTANTS(:,121).*CONSTANTS(:,149)+ (1.00000 - CONSTANTS(:,121)).*CONSTANTS(:,150); CONSTANTS(:,224) = CONSTANTS(:,151); CONSTANTS(:,225) = CONSTANTS(:,223); CONSTANTS(:,226) = CONSTANTS(:,223); CONSTANTS(:,227) = CONSTANTS(:,223); CONSTANTS(:,228) = CONSTANTS(:,224); CONSTANTS(:,229) = CONSTANTS(:,224); CONSTANTS(:,230) = CONSTANTS(:,145).*power(1.00000, 0.250000).*(power(CONSTANTS(:,7), 0.750000)./(1.00000+power(CONSTANTS(:,47)./CONSTANTS(:,154), CONSTANTS(:,153)))); if (isempty(STATES)), warning('Initial values for states not set');, end end function [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS) global algebraicVariableCount; statesSize = size(STATES); statesColumnCount = statesSize(2); if ( statesColumnCount == 1) STATES = STATES'; ALGEBRAIC = zeros(1, algebraicVariableCount); utilOnes = 1; else statesRowCount = statesSize(1); ALGEBRAIC = zeros(statesRowCount, algebraicVariableCount); RATES = zeros(statesRowCount, statesColumnCount); utilOnes = ones(statesRowCount, 1); end ALGEBRAIC(:,3) = CONSTANTS(:,159).*STATES(:,5); RATES(:,5) = CONSTANTS(:,158) - ALGEBRAIC(:,3); ALGEBRAIC(:,6) = CONSTANTS(:,165).*STATES(:,10); RATES(:,10) = CONSTANTS(:,164) - ALGEBRAIC(:,6); ALGEBRAIC(:,1) = STATES(:,1)./CONSTANTS(:,7); ALGEBRAIC(:,10) = CONSTANTS(:,1).*(STATES(:,2)+STATES(:,3)); ALGEBRAIC(:,11) = ALGEBRAIC(:,10)./(1.00000+CONSTANTS(:,175)./ALGEBRAIC(:,1)); ALGEBRAIC(:,9) = CONSTANTS(:,155).*STATES(:,1); RATES(:,1) = CONSTANTS(:,156) - (ALGEBRAIC(:,11)+ALGEBRAIC(:,9)); ALGEBRAIC(:,27) = STATES(:,8)./CONSTANTS(:,7); ALGEBRAIC(:,29) = CONSTANTS(:,55).*STATES(:,2); ALGEBRAIC(:,30) = ALGEBRAIC(:,29)./(1.00000+CONSTANTS(:,185)./ALGEBRAIC(:,27)); ALGEBRAIC(:,28) = CONSTANTS(:,162).*STATES(:,8); RATES(:,8) = CONSTANTS(:,184) - (ALGEBRAIC(:,30)+ALGEBRAIC(:,28)); ALGEBRAIC(:,31) = STATES(:,9)./CONSTANTS(:,7); ALGEBRAIC(:,33) = CONSTANTS(:,61).*STATES(:,3).*((1.00000 - ( VOI.*CONSTANTS(:,68))./1.00000)+(( VOI.*CONSTANTS(:,68))./1.00000)./(1.00000+power(CONSTANTS(:,66)./CONSTANTS(:,67), CONSTANTS(:,65)))); ALGEBRAIC(:,34) = ALGEBRAIC(:,33)./(1.00000+CONSTANTS(:,187)./ALGEBRAIC(:,31)); ALGEBRAIC(:,32) = CONSTANTS(:,163).*STATES(:,9); RATES(:,9) = CONSTANTS(:,186) - (ALGEBRAIC(:,34)+ALGEBRAIC(:,32)); ALGEBRAIC(:,12) = STATES(:,4)./CONSTANTS(:,7); ALGEBRAIC(:,18) = CONSTANTS(:,12).*STATES(:,3); ALGEBRAIC(:,48) = STATES(:,12)./CONSTANTS(:,7); ALGEBRAIC(:,50) = ALGEBRAIC(:,18)./(1.00000+CONSTANTS(:,21)./ALGEBRAIC(:,12)+CONSTANTS(:,23)./ALGEBRAIC(:,48)); ALGEBRAIC(:,55) = CONSTANTS(:,89).*ALGEBRAIC(:,50); ALGEBRAIC(:,19) = STATES(:,6)./CONSTANTS(:,7); ALGEBRAIC(:,25) = CONSTANTS(:,33).*STATES(:,3); ALGEBRAIC(:,52) = ALGEBRAIC(:,25)./(1.00000+CONSTANTS(:,39)./ALGEBRAIC(:,19)+CONSTANTS(:,44)./ALGEBRAIC(:,48)); ALGEBRAIC(:,54) = CONSTANTS(:,88).*ALGEBRAIC(:,52); ALGEBRAIC(:,57) = CONSTANTS(:,90).*STATES(:,3); ALGEBRAIC(:,58) = ALGEBRAIC(:,57)./( (1.00000+CONSTANTS(:,92)./ALGEBRAIC(:,48)).*(1.00000+ALGEBRAIC(:,19)./CONSTANTS(:,93)+ALGEBRAIC(:,12)./CONSTANTS(:,94))); ALGEBRAIC(:,53) = CONSTANTS(:,91).*ALGEBRAIC(:,34); ALGEBRAIC(:,56) = CONSTANTS(:,167).*STATES(:,12); RATES(:,12) = ALGEBRAIC(:,53) - (ALGEBRAIC(:,54)+ALGEBRAIC(:,55)+ALGEBRAIC(:,58)+ALGEBRAIC(:,56)); ALGEBRAIC(:,62) = CONSTANTS(:,178).*STATES(:,2).*CONSTANTS(:,48); ALGEBRAIC(:,64) = CONSTANTS(:,51).*ALGEBRAIC(:,62); ALGEBRAIC(:,26) = CONSTANTS(:,161).*STATES(:,7); RATES(:,7) = (CONSTANTS(:,183)+ALGEBRAIC(:,64)) - ALGEBRAIC(:,26); ALGEBRAIC(:,67) = CONSTANTS(:,179).*STATES(:,13).*CONSTANTS(:,48); ALGEBRAIC(:,35) = STATES(:,11)./CONSTANTS(:,7); ALGEBRAIC(:,44) = CONSTANTS(:,76).*STATES(:,2); ALGEBRAIC(:,45) = ALGEBRAIC(:,44)./(1.00000+CONSTANTS(:,74)./ALGEBRAIC(:,35)); ALGEBRAIC(:,66) = CONSTANTS(:,98).*ALGEBRAIC(:,45); ALGEBRAIC(:,71) = CONSTANTS(:,176).*STATES(:,13).*CONSTANTS(:,48); ALGEBRAIC(:,69) = CONSTANTS(:,169).*STATES(:,13).*(1.00000 - CONSTANTS(:,48)); RATES(:,13) = ALGEBRAIC(:,66) - (ALGEBRAIC(:,67)+ALGEBRAIC(:,69)+ALGEBRAIC(:,71)); ALGEBRAIC(:,59) = STATES(:,2)./CONSTANTS(:,7); ALGEBRAIC(:,70) = STATES(:,3)./CONSTANTS(:,7); ALGEBRAIC(:,75) = ( CONSTANTS(:,101).*STATES(:,2).*CONSTANTS(:,48).*ALGEBRAIC(:,70))./(ALGEBRAIC(:,70)+ ALGEBRAIC(:,59).*(1.00000 - CONSTANTS(:,48))); ALGEBRAIC(:,76) = ALGEBRAIC(:,75)./(1.00000+CONSTANTS(:,102)./(ALGEBRAIC(:,70)+ ALGEBRAIC(:,59).*(1.00000 - CONSTANTS(:,48)))); ALGEBRAIC(:,72) = CONSTANTS(:,99).*ALGEBRAIC(:,52); ALGEBRAIC(:,73) = CONSTANTS(:,100).*ALGEBRAIC(:,50); ALGEBRAIC(:,74) = CONSTANTS(:,170).*STATES(:,3); RATES(:,3) = (ALGEBRAIC(:,72)+ALGEBRAIC(:,73)) - (ALGEBRAIC(:,76)+ALGEBRAIC(:,74)); ALGEBRAIC(:,16) = CONSTANTS(:,10).*STATES(:,3); ALGEBRAIC(:,49) = ALGEBRAIC(:,16)./(1.00000+CONSTANTS(:,19)./ALGEBRAIC(:,12)+ALGEBRAIC(:,48)./CONSTANTS(:,25)); ALGEBRAIC(:,17) = CONSTANTS(:,11).*STATES(:,2); ALGEBRAIC(:,37) = ALGEBRAIC(:,17)./(1.00000+CONSTANTS(:,20)./ALGEBRAIC(:,12)+CONSTANTS(:,22)./ALGEBRAIC(:,35)); ALGEBRAIC(:,15) = CONSTANTS(:,10).*STATES(:,2); ALGEBRAIC(:,36) = ALGEBRAIC(:,15)./(1.00000+CONSTANTS(:,19)./ALGEBRAIC(:,12)+ALGEBRAIC(:,35)./CONSTANTS(:,24)); ALGEBRAIC(:,13) = CONSTANTS(:,15).*ALGEBRAIC(:,11); ALGEBRAIC(:,63) = CONSTANTS(:,16).*ALGEBRAIC(:,62); ALGEBRAIC(:,77) = ALGEBRAIC(:,76).*(1.00000 - (1.00000./(1.00000+ALGEBRAIC(:,35)./CONSTANTS(:,27))+1.00000./(1.00000+CONSTANTS(:,9)./ALGEBRAIC(:,35)))); ALGEBRAIC(:,79) = CONSTANTS(:,17).*ALGEBRAIC(:,77); ALGEBRAIC(:,14) = CONSTANTS(:,157).*STATES(:,4); RATES(:,4) = (CONSTANTS(:,177)+ALGEBRAIC(:,13)+ALGEBRAIC(:,63)+CONSTANTS(:,180)+ALGEBRAIC(:,79)) - (ALGEBRAIC(:,36)+ALGEBRAIC(:,49)+ALGEBRAIC(:,37)+ALGEBRAIC(:,50)+ALGEBRAIC(:,14)); ALGEBRAIC(:,24) = CONSTANTS(:,32).*STATES(:,2).*(1.00000 - CONSTANTS(:,48)); ALGEBRAIC(:,39) = ALGEBRAIC(:,24)./(1.00000+CONSTANTS(:,38)./ALGEBRAIC(:,19)+CONSTANTS(:,43)./ALGEBRAIC(:,35)); ALGEBRAIC(:,22) = CONSTANTS(:,30).*CONSTANTS(:,7).*(CONSTANTS(:,49)./(1.00000+ALGEBRAIC(:,19)./CONSTANTS(:,45))); ALGEBRAIC(:,23) = CONSTANTS(:,35).*ALGEBRAIC(:,22); ALGEBRAIC(:,38) = CONSTANTS(:,36).*ALGEBRAIC(:,36); ALGEBRAIC(:,51) = CONSTANTS(:,36).*ALGEBRAIC(:,49); ALGEBRAIC(:,78) = ( 1.00000.*ALGEBRAIC(:,76))./(1.00000+ALGEBRAIC(:,35)./CONSTANTS(:,27)); ALGEBRAIC(:,80) = CONSTANTS(:,37).*ALGEBRAIC(:,78); ALGEBRAIC(:,20) = CONSTANTS(:,182)./(1.00000+CONSTANTS(:,40)./ALGEBRAIC(:,19)); ALGEBRAIC(:,21) = CONSTANTS(:,160).*STATES(:,6); RATES(:,6) = (CONSTANTS(:,181)+ALGEBRAIC(:,38)+ALGEBRAIC(:,51)+ALGEBRAIC(:,23)+ALGEBRAIC(:,80)) - (ALGEBRAIC(:,20)+ALGEBRAIC(:,39)+ALGEBRAIC(:,52)+ALGEBRAIC(:,21)); ALGEBRAIC(:,81) = ALGEBRAIC(:,76)./(1.00000+CONSTANTS(:,9)./ALGEBRAIC(:,35)); ALGEBRAIC(:,83) = CONSTANTS(:,73).*ALGEBRAIC(:,81); ALGEBRAIC(:,41) = CONSTANTS(:,71).*ALGEBRAIC(:,39); ALGEBRAIC(:,42) = CONSTANTS(:,72).*ALGEBRAIC(:,37); ALGEBRAIC(:,46) = CONSTANTS(:,77).*STATES(:,2); ALGEBRAIC(:,47) = ALGEBRAIC(:,46).*((1.00000 - CONSTANTS(:,48))./( (1.00000+CONSTANTS(:,75)./ALGEBRAIC(:,35)).*(1.00000+ALGEBRAIC(:,19)./CONSTANTS(:,86)).*(ALGEBRAIC(:,12)./CONSTANTS(:,87))))+( ALGEBRAIC(:,46).*CONSTANTS(:,48))./(1.00000+CONSTANTS(:,75)./ALGEBRAIC(:,35)); ALGEBRAIC(:,40) = CONSTANTS(:,81).*ALGEBRAIC(:,30); ALGEBRAIC(:,68) = CONSTANTS(:,82).*ALGEBRAIC(:,67); ALGEBRAIC(:,43) = CONSTANTS(:,166).*STATES(:,11); RATES(:,11) = (CONSTANTS(:,188)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)+CONSTANTS(:,190)) - (ALGEBRAIC(:,41)+ALGEBRAIC(:,42)+ALGEBRAIC(:,83)+ALGEBRAIC(:,45)+ALGEBRAIC(:,47)+ALGEBRAIC(:,43)); ALGEBRAIC(:,60) = CONSTANTS(:,95).*ALGEBRAIC(:,39); ALGEBRAIC(:,61) = CONSTANTS(:,96).*ALGEBRAIC(:,37); ALGEBRAIC(:,82) = CONSTANTS(:,97).*ALGEBRAIC(:,81); ALGEBRAIC(:,65) = CONSTANTS(:,176).*STATES(:,2).*CONSTANTS(:,48); RATES(:,2) = (ALGEBRAIC(:,60)+ALGEBRAIC(:,61)+ALGEBRAIC(:,82)) - (ALGEBRAIC(:,62)+ALGEBRAIC(:,81)+ALGEBRAIC(:,65)); ALGEBRAIC(:,112) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,148) = ( CONSTANTS(:,105).*CONSTANTS(:,188)+ CONSTANTS(:,192).*CONSTANTS(:,190)+ CONSTANTS(:,107).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,156) = ALGEBRAIC(:,148); ALGEBRAIC(:,160) = ALGEBRAIC(:,156).*ALGEBRAIC(:,112); ALGEBRAIC(:,116) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,120) = CONSTANTS(:,195).*ALGEBRAIC(:,116); ALGEBRAIC(:,124) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,164) = ALGEBRAIC(:,148); ALGEBRAIC(:,168) = ALGEBRAIC(:,164).*ALGEBRAIC(:,124); ALGEBRAIC(:,128) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,132) = CONSTANTS(:,196).*ALGEBRAIC(:,128); ALGEBRAIC(:,136) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,172) = ALGEBRAIC(:,148); ALGEBRAIC(:,176) = ALGEBRAIC(:,172).*ALGEBRAIC(:,136); ALGEBRAIC(:,152) = ALGEBRAIC(:,148).*ALGEBRAIC(:,47); ALGEBRAIC(:,88) = CONSTANTS(:,193).*ALGEBRAIC(:,58); ALGEBRAIC(:,92) = CONSTANTS(:,198).*ALGEBRAIC(:,36); ALGEBRAIC(:,96) = CONSTANTS(:,198).*ALGEBRAIC(:,49); ALGEBRAIC(:,140) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,144) = CONSTANTS(:,197).*ALGEBRAIC(:,140); ALGEBRAIC(:,100) = CONSTANTS(:,199).*ALGEBRAIC(:,78); ALGEBRAIC(:,84) = STATES(:,14)./CONSTANTS(:,7); ALGEBRAIC(:,104) = CONSTANTS(:,200)./(1.00000+CONSTANTS(:,103)./ALGEBRAIC(:,84)); ALGEBRAIC(:,108) = CONSTANTS(:,171).*STATES(:,14); RATES(:,14) = (CONSTANTS(:,191)+ALGEBRAIC(:,160)+ALGEBRAIC(:,120)+ALGEBRAIC(:,168)+ALGEBRAIC(:,132)+ALGEBRAIC(:,176)+ALGEBRAIC(:,152)+ALGEBRAIC(:,88)+ALGEBRAIC(:,92)+ALGEBRAIC(:,96)+ALGEBRAIC(:,144)+ALGEBRAIC(:,100)) - (ALGEBRAIC(:,104)+ALGEBRAIC(:,108)); ALGEBRAIC(:,113) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,149) = ( CONSTANTS(:,124).*CONSTANTS(:,188)+ CONSTANTS(:,202).*CONSTANTS(:,190)+ CONSTANTS(:,126).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,157) = ALGEBRAIC(:,149); ALGEBRAIC(:,161) = ALGEBRAIC(:,157).*ALGEBRAIC(:,113); ALGEBRAIC(:,117) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,121) = CONSTANTS(:,205).*ALGEBRAIC(:,117); ALGEBRAIC(:,125) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,165) = ALGEBRAIC(:,149); ALGEBRAIC(:,169) = ALGEBRAIC(:,165).*ALGEBRAIC(:,125); ALGEBRAIC(:,129) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,133) = CONSTANTS(:,206).*ALGEBRAIC(:,129); ALGEBRAIC(:,137) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,173) = ALGEBRAIC(:,149); ALGEBRAIC(:,177) = ALGEBRAIC(:,173).*ALGEBRAIC(:,137); ALGEBRAIC(:,153) = ALGEBRAIC(:,149).*ALGEBRAIC(:,47); ALGEBRAIC(:,89) = CONSTANTS(:,203).*ALGEBRAIC(:,58); ALGEBRAIC(:,93) = CONSTANTS(:,208).*ALGEBRAIC(:,36); ALGEBRAIC(:,97) = CONSTANTS(:,208).*ALGEBRAIC(:,49); ALGEBRAIC(:,141) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,145) = CONSTANTS(:,207).*ALGEBRAIC(:,141); ALGEBRAIC(:,101) = CONSTANTS(:,209).*ALGEBRAIC(:,78); ALGEBRAIC(:,85) = STATES(:,15)./CONSTANTS(:,7); ALGEBRAIC(:,105) = CONSTANTS(:,210)./(1.00000+CONSTANTS(:,122)./ALGEBRAIC(:,85)); ALGEBRAIC(:,109) = CONSTANTS(:,172).*STATES(:,15); RATES(:,15) = (CONSTANTS(:,201)+ALGEBRAIC(:,161)+ALGEBRAIC(:,121)+ALGEBRAIC(:,169)+ALGEBRAIC(:,133)+ALGEBRAIC(:,177)+ALGEBRAIC(:,153)+ALGEBRAIC(:,89)+ALGEBRAIC(:,93)+ALGEBRAIC(:,97)+ALGEBRAIC(:,145)+ALGEBRAIC(:,101)) - (ALGEBRAIC(:,105)+ALGEBRAIC(:,109)); ALGEBRAIC(:,114) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,150) = ( CONSTANTS(:,135).*CONSTANTS(:,188)+ CONSTANTS(:,212).*CONSTANTS(:,190)+ CONSTANTS(:,137).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,158) = ALGEBRAIC(:,150); ALGEBRAIC(:,162) = ALGEBRAIC(:,158).*ALGEBRAIC(:,114); ALGEBRAIC(:,118) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,122) = CONSTANTS(:,215).*ALGEBRAIC(:,118); ALGEBRAIC(:,126) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,166) = ALGEBRAIC(:,150); ALGEBRAIC(:,170) = ALGEBRAIC(:,166).*ALGEBRAIC(:,126); ALGEBRAIC(:,130) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,134) = CONSTANTS(:,216).*ALGEBRAIC(:,130); ALGEBRAIC(:,138) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,174) = ALGEBRAIC(:,150); ALGEBRAIC(:,178) = ALGEBRAIC(:,174).*ALGEBRAIC(:,138); ALGEBRAIC(:,154) = ALGEBRAIC(:,150).*ALGEBRAIC(:,47); ALGEBRAIC(:,90) = CONSTANTS(:,213).*ALGEBRAIC(:,58); ALGEBRAIC(:,94) = CONSTANTS(:,218).*ALGEBRAIC(:,36); ALGEBRAIC(:,98) = CONSTANTS(:,218).*ALGEBRAIC(:,49); ALGEBRAIC(:,142) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,146) = CONSTANTS(:,217).*ALGEBRAIC(:,142); ALGEBRAIC(:,102) = CONSTANTS(:,219).*ALGEBRAIC(:,78); ALGEBRAIC(:,86) = STATES(:,16)./CONSTANTS(:,7); ALGEBRAIC(:,106) = CONSTANTS(:,220)./(1.00000+CONSTANTS(:,133)./ALGEBRAIC(:,86)); ALGEBRAIC(:,110) = CONSTANTS(:,173).*STATES(:,16); RATES(:,16) = (CONSTANTS(:,211)+ALGEBRAIC(:,162)+ALGEBRAIC(:,122)+ALGEBRAIC(:,170)+ALGEBRAIC(:,134)+ALGEBRAIC(:,178)+ALGEBRAIC(:,154)+ALGEBRAIC(:,90)+ALGEBRAIC(:,94)+ALGEBRAIC(:,98)+ALGEBRAIC(:,146)+ALGEBRAIC(:,102)) - (ALGEBRAIC(:,106)+ALGEBRAIC(:,110)); ALGEBRAIC(:,115) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,151) = ( CONSTANTS(:,146).*CONSTANTS(:,188)+ CONSTANTS(:,222).*CONSTANTS(:,190)+ CONSTANTS(:,148).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,159) = ALGEBRAIC(:,151); ALGEBRAIC(:,163) = ALGEBRAIC(:,159).*ALGEBRAIC(:,115); ALGEBRAIC(:,119) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,123) = CONSTANTS(:,225).*ALGEBRAIC(:,119); ALGEBRAIC(:,127) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,167) = ALGEBRAIC(:,151); ALGEBRAIC(:,171) = ALGEBRAIC(:,167).*ALGEBRAIC(:,127); ALGEBRAIC(:,131) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,135) = CONSTANTS(:,226).*ALGEBRAIC(:,131); ALGEBRAIC(:,139) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,175) = ALGEBRAIC(:,151); ALGEBRAIC(:,179) = ALGEBRAIC(:,175).*ALGEBRAIC(:,139); ALGEBRAIC(:,155) = ALGEBRAIC(:,151).*ALGEBRAIC(:,47); ALGEBRAIC(:,91) = CONSTANTS(:,223).*ALGEBRAIC(:,58); ALGEBRAIC(:,95) = CONSTANTS(:,228).*ALGEBRAIC(:,36); ALGEBRAIC(:,99) = CONSTANTS(:,228).*ALGEBRAIC(:,49); ALGEBRAIC(:,143) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,147) = CONSTANTS(:,227).*ALGEBRAIC(:,143); ALGEBRAIC(:,103) = CONSTANTS(:,229).*ALGEBRAIC(:,78); ALGEBRAIC(:,87) = STATES(:,17)./CONSTANTS(:,7); ALGEBRAIC(:,107) = CONSTANTS(:,230)./(1.00000+CONSTANTS(:,144)./ALGEBRAIC(:,87)); ALGEBRAIC(:,111) = CONSTANTS(:,174).*STATES(:,17); RATES(:,17) = (CONSTANTS(:,221)+ALGEBRAIC(:,163)+ALGEBRAIC(:,123)+ALGEBRAIC(:,171)+ALGEBRAIC(:,135)+ALGEBRAIC(:,179)+ALGEBRAIC(:,155)+ALGEBRAIC(:,91)+ALGEBRAIC(:,95)+ALGEBRAIC(:,99)+ALGEBRAIC(:,147)+ALGEBRAIC(:,103)) - (ALGEBRAIC(:,107)+ALGEBRAIC(:,111)); RATES = RATES'; end % Calculate algebraic variables function ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI) statesSize = size(STATES); statesColumnCount = statesSize(2); if ( statesColumnCount == 1) STATES = STATES'; utilOnes = 1; else statesRowCount = statesSize(1); utilOnes = ones(statesRowCount, 1); end ALGEBRAIC(:,3) = CONSTANTS(:,159).*STATES(:,5); ALGEBRAIC(:,6) = CONSTANTS(:,165).*STATES(:,10); ALGEBRAIC(:,1) = STATES(:,1)./CONSTANTS(:,7); ALGEBRAIC(:,10) = CONSTANTS(:,1).*(STATES(:,2)+STATES(:,3)); ALGEBRAIC(:,11) = ALGEBRAIC(:,10)./(1.00000+CONSTANTS(:,175)./ALGEBRAIC(:,1)); ALGEBRAIC(:,9) = CONSTANTS(:,155).*STATES(:,1); ALGEBRAIC(:,27) = STATES(:,8)./CONSTANTS(:,7); ALGEBRAIC(:,29) = CONSTANTS(:,55).*STATES(:,2); ALGEBRAIC(:,30) = ALGEBRAIC(:,29)./(1.00000+CONSTANTS(:,185)./ALGEBRAIC(:,27)); ALGEBRAIC(:,28) = CONSTANTS(:,162).*STATES(:,8); ALGEBRAIC(:,31) = STATES(:,9)./CONSTANTS(:,7); ALGEBRAIC(:,33) = CONSTANTS(:,61).*STATES(:,3).*((1.00000 - ( VOI.*CONSTANTS(:,68))./1.00000)+(( VOI.*CONSTANTS(:,68))./1.00000)./(1.00000+power(CONSTANTS(:,66)./CONSTANTS(:,67), CONSTANTS(:,65)))); ALGEBRAIC(:,34) = ALGEBRAIC(:,33)./(1.00000+CONSTANTS(:,187)./ALGEBRAIC(:,31)); ALGEBRAIC(:,32) = CONSTANTS(:,163).*STATES(:,9); ALGEBRAIC(:,12) = STATES(:,4)./CONSTANTS(:,7); ALGEBRAIC(:,18) = CONSTANTS(:,12).*STATES(:,3); ALGEBRAIC(:,48) = STATES(:,12)./CONSTANTS(:,7); ALGEBRAIC(:,50) = ALGEBRAIC(:,18)./(1.00000+CONSTANTS(:,21)./ALGEBRAIC(:,12)+CONSTANTS(:,23)./ALGEBRAIC(:,48)); ALGEBRAIC(:,55) = CONSTANTS(:,89).*ALGEBRAIC(:,50); ALGEBRAIC(:,19) = STATES(:,6)./CONSTANTS(:,7); ALGEBRAIC(:,25) = CONSTANTS(:,33).*STATES(:,3); ALGEBRAIC(:,52) = ALGEBRAIC(:,25)./(1.00000+CONSTANTS(:,39)./ALGEBRAIC(:,19)+CONSTANTS(:,44)./ALGEBRAIC(:,48)); ALGEBRAIC(:,54) = CONSTANTS(:,88).*ALGEBRAIC(:,52); ALGEBRAIC(:,57) = CONSTANTS(:,90).*STATES(:,3); ALGEBRAIC(:,58) = ALGEBRAIC(:,57)./( (1.00000+CONSTANTS(:,92)./ALGEBRAIC(:,48)).*(1.00000+ALGEBRAIC(:,19)./CONSTANTS(:,93)+ALGEBRAIC(:,12)./CONSTANTS(:,94))); ALGEBRAIC(:,53) = CONSTANTS(:,91).*ALGEBRAIC(:,34); ALGEBRAIC(:,56) = CONSTANTS(:,167).*STATES(:,12); ALGEBRAIC(:,62) = CONSTANTS(:,178).*STATES(:,2).*CONSTANTS(:,48); ALGEBRAIC(:,64) = CONSTANTS(:,51).*ALGEBRAIC(:,62); ALGEBRAIC(:,26) = CONSTANTS(:,161).*STATES(:,7); ALGEBRAIC(:,67) = CONSTANTS(:,179).*STATES(:,13).*CONSTANTS(:,48); ALGEBRAIC(:,35) = STATES(:,11)./CONSTANTS(:,7); ALGEBRAIC(:,44) = CONSTANTS(:,76).*STATES(:,2); ALGEBRAIC(:,45) = ALGEBRAIC(:,44)./(1.00000+CONSTANTS(:,74)./ALGEBRAIC(:,35)); ALGEBRAIC(:,66) = CONSTANTS(:,98).*ALGEBRAIC(:,45); ALGEBRAIC(:,71) = CONSTANTS(:,176).*STATES(:,13).*CONSTANTS(:,48); ALGEBRAIC(:,69) = CONSTANTS(:,169).*STATES(:,13).*(1.00000 - CONSTANTS(:,48)); ALGEBRAIC(:,59) = STATES(:,2)./CONSTANTS(:,7); ALGEBRAIC(:,70) = STATES(:,3)./CONSTANTS(:,7); ALGEBRAIC(:,75) = ( CONSTANTS(:,101).*STATES(:,2).*CONSTANTS(:,48).*ALGEBRAIC(:,70))./(ALGEBRAIC(:,70)+ ALGEBRAIC(:,59).*(1.00000 - CONSTANTS(:,48))); ALGEBRAIC(:,76) = ALGEBRAIC(:,75)./(1.00000+CONSTANTS(:,102)./(ALGEBRAIC(:,70)+ ALGEBRAIC(:,59).*(1.00000 - CONSTANTS(:,48)))); ALGEBRAIC(:,72) = CONSTANTS(:,99).*ALGEBRAIC(:,52); ALGEBRAIC(:,73) = CONSTANTS(:,100).*ALGEBRAIC(:,50); ALGEBRAIC(:,74) = CONSTANTS(:,170).*STATES(:,3); ALGEBRAIC(:,16) = CONSTANTS(:,10).*STATES(:,3); ALGEBRAIC(:,49) = ALGEBRAIC(:,16)./(1.00000+CONSTANTS(:,19)./ALGEBRAIC(:,12)+ALGEBRAIC(:,48)./CONSTANTS(:,25)); ALGEBRAIC(:,17) = CONSTANTS(:,11).*STATES(:,2); ALGEBRAIC(:,37) = ALGEBRAIC(:,17)./(1.00000+CONSTANTS(:,20)./ALGEBRAIC(:,12)+CONSTANTS(:,22)./ALGEBRAIC(:,35)); ALGEBRAIC(:,15) = CONSTANTS(:,10).*STATES(:,2); ALGEBRAIC(:,36) = ALGEBRAIC(:,15)./(1.00000+CONSTANTS(:,19)./ALGEBRAIC(:,12)+ALGEBRAIC(:,35)./CONSTANTS(:,24)); ALGEBRAIC(:,13) = CONSTANTS(:,15).*ALGEBRAIC(:,11); ALGEBRAIC(:,63) = CONSTANTS(:,16).*ALGEBRAIC(:,62); ALGEBRAIC(:,77) = ALGEBRAIC(:,76).*(1.00000 - (1.00000./(1.00000+ALGEBRAIC(:,35)./CONSTANTS(:,27))+1.00000./(1.00000+CONSTANTS(:,9)./ALGEBRAIC(:,35)))); ALGEBRAIC(:,79) = CONSTANTS(:,17).*ALGEBRAIC(:,77); ALGEBRAIC(:,14) = CONSTANTS(:,157).*STATES(:,4); ALGEBRAIC(:,24) = CONSTANTS(:,32).*STATES(:,2).*(1.00000 - CONSTANTS(:,48)); ALGEBRAIC(:,39) = ALGEBRAIC(:,24)./(1.00000+CONSTANTS(:,38)./ALGEBRAIC(:,19)+CONSTANTS(:,43)./ALGEBRAIC(:,35)); ALGEBRAIC(:,22) = CONSTANTS(:,30).*CONSTANTS(:,7).*(CONSTANTS(:,49)./(1.00000+ALGEBRAIC(:,19)./CONSTANTS(:,45))); ALGEBRAIC(:,23) = CONSTANTS(:,35).*ALGEBRAIC(:,22); ALGEBRAIC(:,38) = CONSTANTS(:,36).*ALGEBRAIC(:,36); ALGEBRAIC(:,51) = CONSTANTS(:,36).*ALGEBRAIC(:,49); ALGEBRAIC(:,78) = ( 1.00000.*ALGEBRAIC(:,76))./(1.00000+ALGEBRAIC(:,35)./CONSTANTS(:,27)); ALGEBRAIC(:,80) = CONSTANTS(:,37).*ALGEBRAIC(:,78); ALGEBRAIC(:,20) = CONSTANTS(:,182)./(1.00000+CONSTANTS(:,40)./ALGEBRAIC(:,19)); ALGEBRAIC(:,21) = CONSTANTS(:,160).*STATES(:,6); ALGEBRAIC(:,81) = ALGEBRAIC(:,76)./(1.00000+CONSTANTS(:,9)./ALGEBRAIC(:,35)); ALGEBRAIC(:,83) = CONSTANTS(:,73).*ALGEBRAIC(:,81); ALGEBRAIC(:,41) = CONSTANTS(:,71).*ALGEBRAIC(:,39); ALGEBRAIC(:,42) = CONSTANTS(:,72).*ALGEBRAIC(:,37); ALGEBRAIC(:,46) = CONSTANTS(:,77).*STATES(:,2); ALGEBRAIC(:,47) = ALGEBRAIC(:,46).*((1.00000 - CONSTANTS(:,48))./( (1.00000+CONSTANTS(:,75)./ALGEBRAIC(:,35)).*(1.00000+ALGEBRAIC(:,19)./CONSTANTS(:,86)).*(ALGEBRAIC(:,12)./CONSTANTS(:,87))))+( ALGEBRAIC(:,46).*CONSTANTS(:,48))./(1.00000+CONSTANTS(:,75)./ALGEBRAIC(:,35)); ALGEBRAIC(:,40) = CONSTANTS(:,81).*ALGEBRAIC(:,30); ALGEBRAIC(:,68) = CONSTANTS(:,82).*ALGEBRAIC(:,67); ALGEBRAIC(:,43) = CONSTANTS(:,166).*STATES(:,11); ALGEBRAIC(:,60) = CONSTANTS(:,95).*ALGEBRAIC(:,39); ALGEBRAIC(:,61) = CONSTANTS(:,96).*ALGEBRAIC(:,37); ALGEBRAIC(:,82) = CONSTANTS(:,97).*ALGEBRAIC(:,81); ALGEBRAIC(:,65) = CONSTANTS(:,176).*STATES(:,2).*CONSTANTS(:,48); ALGEBRAIC(:,112) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,148) = ( CONSTANTS(:,105).*CONSTANTS(:,188)+ CONSTANTS(:,192).*CONSTANTS(:,190)+ CONSTANTS(:,107).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,156) = ALGEBRAIC(:,148); ALGEBRAIC(:,160) = ALGEBRAIC(:,156).*ALGEBRAIC(:,112); ALGEBRAIC(:,116) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,120) = CONSTANTS(:,195).*ALGEBRAIC(:,116); ALGEBRAIC(:,124) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,164) = ALGEBRAIC(:,148); ALGEBRAIC(:,168) = ALGEBRAIC(:,164).*ALGEBRAIC(:,124); ALGEBRAIC(:,128) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,132) = CONSTANTS(:,196).*ALGEBRAIC(:,128); ALGEBRAIC(:,136) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,172) = ALGEBRAIC(:,148); ALGEBRAIC(:,176) = ALGEBRAIC(:,172).*ALGEBRAIC(:,136); ALGEBRAIC(:,152) = ALGEBRAIC(:,148).*ALGEBRAIC(:,47); ALGEBRAIC(:,88) = CONSTANTS(:,193).*ALGEBRAIC(:,58); ALGEBRAIC(:,92) = CONSTANTS(:,198).*ALGEBRAIC(:,36); ALGEBRAIC(:,96) = CONSTANTS(:,198).*ALGEBRAIC(:,49); ALGEBRAIC(:,140) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,144) = CONSTANTS(:,197).*ALGEBRAIC(:,140); ALGEBRAIC(:,100) = CONSTANTS(:,199).*ALGEBRAIC(:,78); ALGEBRAIC(:,84) = STATES(:,14)./CONSTANTS(:,7); ALGEBRAIC(:,104) = CONSTANTS(:,200)./(1.00000+CONSTANTS(:,103)./ALGEBRAIC(:,84)); ALGEBRAIC(:,108) = CONSTANTS(:,171).*STATES(:,14); ALGEBRAIC(:,113) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,149) = ( CONSTANTS(:,124).*CONSTANTS(:,188)+ CONSTANTS(:,202).*CONSTANTS(:,190)+ CONSTANTS(:,126).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,157) = ALGEBRAIC(:,149); ALGEBRAIC(:,161) = ALGEBRAIC(:,157).*ALGEBRAIC(:,113); ALGEBRAIC(:,117) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,121) = CONSTANTS(:,205).*ALGEBRAIC(:,117); ALGEBRAIC(:,125) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,165) = ALGEBRAIC(:,149); ALGEBRAIC(:,169) = ALGEBRAIC(:,165).*ALGEBRAIC(:,125); ALGEBRAIC(:,129) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,133) = CONSTANTS(:,206).*ALGEBRAIC(:,129); ALGEBRAIC(:,137) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,173) = ALGEBRAIC(:,149); ALGEBRAIC(:,177) = ALGEBRAIC(:,173).*ALGEBRAIC(:,137); ALGEBRAIC(:,153) = ALGEBRAIC(:,149).*ALGEBRAIC(:,47); ALGEBRAIC(:,89) = CONSTANTS(:,203).*ALGEBRAIC(:,58); ALGEBRAIC(:,93) = CONSTANTS(:,208).*ALGEBRAIC(:,36); ALGEBRAIC(:,97) = CONSTANTS(:,208).*ALGEBRAIC(:,49); ALGEBRAIC(:,141) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,145) = CONSTANTS(:,207).*ALGEBRAIC(:,141); ALGEBRAIC(:,101) = CONSTANTS(:,209).*ALGEBRAIC(:,78); ALGEBRAIC(:,85) = STATES(:,15)./CONSTANTS(:,7); ALGEBRAIC(:,105) = CONSTANTS(:,210)./(1.00000+CONSTANTS(:,122)./ALGEBRAIC(:,85)); ALGEBRAIC(:,109) = CONSTANTS(:,172).*STATES(:,15); ALGEBRAIC(:,114) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,150) = ( CONSTANTS(:,135).*CONSTANTS(:,188)+ CONSTANTS(:,212).*CONSTANTS(:,190)+ CONSTANTS(:,137).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,158) = ALGEBRAIC(:,150); ALGEBRAIC(:,162) = ALGEBRAIC(:,158).*ALGEBRAIC(:,114); ALGEBRAIC(:,118) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,122) = CONSTANTS(:,215).*ALGEBRAIC(:,118); ALGEBRAIC(:,126) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,166) = ALGEBRAIC(:,150); ALGEBRAIC(:,170) = ALGEBRAIC(:,166).*ALGEBRAIC(:,126); ALGEBRAIC(:,130) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,134) = CONSTANTS(:,216).*ALGEBRAIC(:,130); ALGEBRAIC(:,138) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,174) = ALGEBRAIC(:,150); ALGEBRAIC(:,178) = ALGEBRAIC(:,174).*ALGEBRAIC(:,138); ALGEBRAIC(:,154) = ALGEBRAIC(:,150).*ALGEBRAIC(:,47); ALGEBRAIC(:,90) = CONSTANTS(:,213).*ALGEBRAIC(:,58); ALGEBRAIC(:,94) = CONSTANTS(:,218).*ALGEBRAIC(:,36); ALGEBRAIC(:,98) = CONSTANTS(:,218).*ALGEBRAIC(:,49); ALGEBRAIC(:,142) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,146) = CONSTANTS(:,217).*ALGEBRAIC(:,142); ALGEBRAIC(:,102) = CONSTANTS(:,219).*ALGEBRAIC(:,78); ALGEBRAIC(:,86) = STATES(:,16)./CONSTANTS(:,7); ALGEBRAIC(:,106) = CONSTANTS(:,220)./(1.00000+CONSTANTS(:,133)./ALGEBRAIC(:,86)); ALGEBRAIC(:,110) = CONSTANTS(:,173).*STATES(:,16); ALGEBRAIC(:,115) = CONSTANTS(:,114).*ALGEBRAIC(:,41); ALGEBRAIC(:,151) = ( CONSTANTS(:,146).*CONSTANTS(:,188)+ CONSTANTS(:,222).*CONSTANTS(:,190)+ CONSTANTS(:,148).*(CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)))./(CONSTANTS(:,188)+CONSTANTS(:,190)+CONSTANTS(:,189)+ALGEBRAIC(:,40)+ALGEBRAIC(:,68)); ALGEBRAIC(:,159) = ALGEBRAIC(:,151); ALGEBRAIC(:,163) = ALGEBRAIC(:,159).*ALGEBRAIC(:,115); ALGEBRAIC(:,119) = CONSTANTS(:,115).*ALGEBRAIC(:,54); ALGEBRAIC(:,123) = CONSTANTS(:,225).*ALGEBRAIC(:,119); ALGEBRAIC(:,127) = CONSTANTS(:,116).*ALGEBRAIC(:,42); ALGEBRAIC(:,167) = ALGEBRAIC(:,151); ALGEBRAIC(:,171) = ALGEBRAIC(:,167).*ALGEBRAIC(:,127); ALGEBRAIC(:,131) = CONSTANTS(:,117).*ALGEBRAIC(:,55); ALGEBRAIC(:,135) = CONSTANTS(:,226).*ALGEBRAIC(:,131); ALGEBRAIC(:,139) = CONSTANTS(:,118).*ALGEBRAIC(:,45); ALGEBRAIC(:,175) = ALGEBRAIC(:,151); ALGEBRAIC(:,179) = ALGEBRAIC(:,175).*ALGEBRAIC(:,139); ALGEBRAIC(:,155) = ALGEBRAIC(:,151).*ALGEBRAIC(:,47); ALGEBRAIC(:,91) = CONSTANTS(:,223).*ALGEBRAIC(:,58); ALGEBRAIC(:,95) = CONSTANTS(:,228).*ALGEBRAIC(:,36); ALGEBRAIC(:,99) = CONSTANTS(:,228).*ALGEBRAIC(:,49); ALGEBRAIC(:,143) = CONSTANTS(:,119).*ALGEBRAIC(:,83); ALGEBRAIC(:,147) = CONSTANTS(:,227).*ALGEBRAIC(:,143); ALGEBRAIC(:,103) = CONSTANTS(:,229).*ALGEBRAIC(:,78); ALGEBRAIC(:,87) = STATES(:,17)./CONSTANTS(:,7); ALGEBRAIC(:,107) = CONSTANTS(:,230)./(1.00000+CONSTANTS(:,144)./ALGEBRAIC(:,87)); ALGEBRAIC(:,111) = CONSTANTS(:,174).*STATES(:,17); ALGEBRAIC(:,2) = STATES(:,5)./CONSTANTS(:,7); ALGEBRAIC(:,4) = STATES(:,7)./CONSTANTS(:,7); ALGEBRAIC(:,5) = STATES(:,10)./CONSTANTS(:,7); ALGEBRAIC(:,7) = CONSTANTS(:,168).*STATES(:,2).*(1.00000 - CONSTANTS(:,48)); ALGEBRAIC(:,8) = STATES(:,13)./CONSTANTS(:,7); end % Pad out or shorten strings to a set length function strout = strpad(strin) req_length = 160; insize = size(strin,2); if insize > req_length strout = strin(1:req_length); else strout = [strin, blanks(req_length - insize)]; end end