https://staging.physiomeproject.org/w/andre/DeltaNotch en-us Delta-Notch Intercellular Signalling trying to work out why this page doesn't render correctly in PMR2 https://staging.physiomeproject.org/w/andre/DeltaNotch/@@file/2859417cff134c6fa7a970dd0647f28938d3d91d trying to work out why this page doesn't render correctly in PMR2 David Nickerson 2011-05-09 adding an initial description of this model and associated diagrams. https://staging.physiomeproject.org/w/andre/DeltaNotch/@@file/0828b3b75c7cf30e3cbcc1e742aa5770ffa3919b adding an initial description of this model and associated diagrams. David Nickerson 2011-05-09 using CellML2Dot revealed that I had missed the public_interface attribute required on the initial value variables https://staging.physiomeproject.org/w/andre/DeltaNotch/@@file/11ec11f15306a4bde9e649023d51364ba2a4423d using CellML2Dot revealed that I had missed the public_interface attribute required on the initial value variables David Nickerson 2011-05-09 adding explicit representation of the boundary conditions https://staging.physiomeproject.org/w/andre/DeltaNotch/@@file/f3546580ee04f9786773ade05d8788b9299f3431 adding explicit representation of the boundary conditions David Nickerson 2011-05-04 updating to an initial attempt at modularising this model. Have now defined a single model representing the single cell equations and then a second model which represents the two cell variant of the Collier et al (1996). the 2cell model imports the single cell model twice and defines the appropriate neighbourhood average values to pass into each of the single cell instances. The figure is the same as before, but regenerated from the new version of the model. https://staging.physiomeproject.org/w/andre/DeltaNotch/@@file/7ceb66207e12c1099988ff309103508f333da2ba updating to an initial attempt at modularising this model. Have now defined a single model representing the single cell equations and then a second model which represents the two cell variant of the Collier et al (1996). the 2cell model imports the single cell model twice and defines the appropriate neighbourhood average values to pass into each of the single cell instances. The figure is the same as before, but regenerated from the new version of the model. David Nickerson 2011-05-04 adding an initial encoding of the Collier et al (1996) Delta-Notch model. This version is for two cells in a 1-dimensional line with zero boundary conditions. The model reproduces Figure 3 from the Collier paper, as shown in collier.png. This is a brute force approach to get an initial encoding of the model, paying no heed to best practices or model reuse. Hopefully this gives a starting point to generalise following best practices guidelines for model reuse and modularity in order to create a more useful version of the model equations. https://staging.physiomeproject.org/w/andre/DeltaNotch/@@file/4c4129334f8a5138d4f2b4aeb174e4183fe5edba adding an initial encoding of the Collier et al (1996) Delta-Notch model. This version is for two cells in a 1-dimensional line with zero boundary conditions. The model reproduces Figure 3 from the Collier paper, as shown in collier.png. This is a brute force approach to get an initial encoding of the model, paying no heed to best practices or model reuse. Hopefully this gives a starting point to generalise following best practices guidelines for model reuse and modularity in order to create a more useful version of the model equations. David Nickerson 2011-04-29