https://staging.physiomeproject.org/w/andre/HH en-us Andre's Hodgkin Huxley model A version of the Hodgkin & Huxley (1952) model coded up by andre for demonstration purposes. adding a SED-ML document which does nested repeated tasks to iterate over clamp potential and temperature; doesn't work with get-sed-ml-client https://staging.physiomeproject.org/w/andre/HH/@@file/957c2190e1eed47d7634613250bc274dc836b826 adding a SED-ML document which does nested repeated tasks to iterate over clamp potential and temperature; doesn't work with get-sed-ml-client David Nickerson 2015-05-25 adding a repeated task to step through multiple clamp potentials https://staging.physiomeproject.org/w/andre/HH/@@file/e2e77c9dea039872d59bd5e713acb0a47ad92819 adding a repeated task to step through multiple clamp potentials David Nickerson 2015-05-24 getting a new verison of the voltage clamp model up and running with SED-ML in preparation of further work https://staging.physiomeproject.org/w/andre/HH/@@file/63d661c8db937f116ed3aeca6e8ef64d7c04a3d1 getting a new verison of the voltage clamp model up and running with SED-ML in preparation of further work David Nickerson 2015-05-24 adding missing CellML namespace to allow XPath expressions to be resolved; change to using local CellML model rather than the one from the repository; adding a report output as that is the only kind of output currently supported by get-sed-ml-client https://staging.physiomeproject.org/w/andre/HH/@@file/56a17e5c445cf4cab3eac02c2183f4e624823e37 adding missing CellML namespace to allow XPath expressions to be resolved; change to using local CellML model rather than the one from the repository; adding a report output as that is the only kind of output currently supported by get-sed-ml-client David Nickerson 2015-05-24 adding a version of the periodic stimulus model for testing out some other code https://staging.physiomeproject.org/w/andre/HH/@@file/1db73daadbfa8f4989b91f478ef89605d25dda8a adding a version of the periodic stimulus model for testing out some other code David Nickerson 2014-09-04 change one of the parameters to a mathematical equation for use in developing model compaction https://staging.physiomeproject.org/w/andre/HH/@@file/8c5884f51f82c4eadf853d284cd9bdd7b3b21e86 change one of the parameters to a mathematical equation for use in developing model compaction David Nickerson 2014-08-19 missing a couple of units imports https://staging.physiomeproject.org/w/andre/HH/@@file/3d0a11384b08d2281752d902c0e602bc0d26ca75 missing a couple of units imports David Nickerson 2014-08-13 adding gating variables to the model interface https://staging.physiomeproject.org/w/andre/HH/@@file/0d2b7defd362435c769e52c1eac59b89d436576a adding gating variables to the model interface David Nickerson 2014-08-13 exposing some key model parameters and some more outputs for use in testing variable control externally to the model https://staging.physiomeproject.org/w/andre/HH/@@file/707320c3e82841ad66ba24b022d16da75a2de54e exposing some key model parameters and some more outputs for use in testing variable control externally to the model David Nickerson 2014-05-20 fixing up references to the tutorial to match what the exposure on the live site wants to used. https://staging.physiomeproject.org/w/andre/HH/@@file/930166f28bc386e6ad7611a3a8ee5ffd5a3490df fixing up references to the tutorial to match what the exposure on the live site wants to used. David Nickerson 2012-09-26 fixing up references to the tutorial to match what the exposure wants to used. https://staging.physiomeproject.org/w/andre/HH/@@file/4e4d6040a3c6df519d3106bbb61297b93c9c47bc fixing up references to the tutorial to match what the exposure wants to used. David Nickerson 2012-09-26 adding more information to the main documentation page for the workspace, including some useful direct links to various documents. https://staging.physiomeproject.org/w/andre/HH/@@file/6b9447fa179ec6c4ec0418f82b985750ce7fc2b7 adding more information to the main documentation page for the workspace, including some useful direct links to various documents. David Nickerson 2012-09-26 renaming the tutorial web page to work around a bug in making PMR2 exposures with files named index.html https://staging.physiomeproject.org/w/andre/HH/@@file/eeb193d348e735266eae6b9948908adc88bc4c00 renaming the tutorial web page to work around a bug in making PMR2 exposures with files named index.html David Nickerson 2012-09-26 adding a bit more to the tutorial regarding instantiation in a simulation experiment. Adding a basic SED-ML for the action potential simulation and images of the results calculated using the SED-ML web tools. https://staging.physiomeproject.org/w/andre/HH/@@file/8ab1ec7d863da476b8ab55a47eac203ade558a60 adding a bit more to the tutorial regarding instantiation in a simulation experiment. Adding a basic SED-ML for the action potential simulation and images of the results calculated using the SED-ML web tools. David Nickerson 2012-09-26 adding a top-level HTML index page to use with the exposure https://staging.physiomeproject.org/w/andre/HH/@@file/1c1b86d99e354143412d753df2ed80d9e92dcaf2 adding a top-level HTML index page to use with the exposure David Nickerson 2012-09-25 updates with more information from the presentation https://staging.physiomeproject.org/w/andre/HH/@@file/1f279bed1a35a70dcac0f000174185f827c5cc91 updates with more information from the presentation David Nickerson 2012-09-25 starting to add a bit of documentation following the slides I put together for the VPH-MIP standardisation and ontologies module. https://staging.physiomeproject.org/w/andre/HH/@@file/036dadde90835505fa089b9d33be0bf5b4e6db24 starting to add a bit of documentation following the slides I put together for the VPH-MIP standardisation and ontologies module. David Nickerson 2012-09-25 moving all metadata to external files to clean up the CellML code for tutorial purposes. Using my new rdfExtrator tool to do the work. https://staging.physiomeproject.org/w/andre/HH/@@file/6e2bed224b4a37b5a92f3e5031f8917f4c69fc8f moving all metadata to external files to clean up the CellML code for tutorial purposes. Using my new rdfExtrator tool to do the work. David Nickerson 2012-09-24 replacing CellML simulation metadata with CSim summary description; bubbling up membrane currents and potential to allow output/referencing via SED-ML. https://staging.physiomeproject.org/w/andre/HH/@@file/a29bfba242e747b82657c6d2d782937d0a01be79 replacing CellML simulation metadata with CSim summary description; bubbling up membrane currents and potential to allow output/referencing via SED-ML. David Nickerson 2012-08-28 adding initial copy of related CellML models and supporting data from my HH reference description example (see: http://www.bioeng.nus.edu.sg/compbiolab/p3/) https://staging.physiomeproject.org/w/andre/HH/@@file/25a4d94fdf146e3e5325a0250283ab25b4af010a adding initial copy of related CellML models and supporting data from my HH reference description example (see: http://www.bioeng.nus.edu.sg/compbiolab/p3/) David Nickerson 2010-08-26