Location: Andre's Hodgkin Huxley model @ 56a17e5c445c / experiments / runAll.pl

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2015-05-24 21:13:19+12:00

Desc:

adding missing CellML namespace to allow XPath expressions to be resolved; change to using local CellML model rather than the one from the repository; adding a report output as that is the only kind of output currently supported by get-sed-ml-client

Permanent Source URI:

https://staging.physiomeproject.org/w/andre/HH/rawfile/56a17e5c445cf4cab3eac02c2183f4e624823e37/experiments/runAll.pl

#!/usr/bin/perl

use strict;

my $exe = "$ENV{HOME}/sf.net/CellMLSimulator/build/release/CellMLSimulator";
my $output = "generated";

mkdir $output;

my @experiments = ("IK-gating-kinetics","INa-gating-kinetics",
                   "periodic-stimulus","voltage-clamp");

foreach my $exp (@experiments) {
  my $o = $output . "/" . $exp;
  my $g = $exp . "-graphs.xml";
  mkdir $o;
  system("$exe --graph-directory=$o --reference-description --data=$o/data.h5 $g");
}