https://staging.physiomeproject.org/w/andre/SAN-ORd en-us An encoding of the human ORd model by Steve Neiderer This workspace houses a CellML 1.0 encoding of the 2011 O'Hara, Virág, Varró, & Rudy 2011 human cardiac ventricular action potential model (ORd). The original article is http://www.ncbi.nlm.nih.gov/pubmed/21637795. This model was encoded based on the Matlab version of the code available from: http://rudylab.wustl.edu/research/cell/. adding a simple python test to help demonstrate https://github.com/dbrnz/opencor/issues/23 https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/e65b98c32226f05047cd3ca5ed6bbf22919887a1 adding a simple python test to help demonstrate https://github.com/dbrnz/opencor/issues/23 David Nickerson 2019-01-10 updating SED-ML to work with newer OpenCOR versions. https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/fe51425ce5ef054bcf04128f29e22346717def48 updating SED-ML to work with newer OpenCOR versions. David Nickerson 2019-01-10 Added annotations to Ohara_Rudy_2011 model https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/267f2433ca82c03bcd8a7cf9b068cd004d1a0bf4 Added annotations to Ohara_Rudy_2011 model rcai987 2014-12-10 Perhaps the last attempt to get the metadata working https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/465bfd3062a87e0310968bce074d7dd384305e76 Perhaps the last attempt to get the metadata working Dougal Cowan 2012-08-17 another try at getting the metadata to work with the PMR2 processor https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/bf1cf8a29bf1e47ffcc701e2b03202c219958e13 another try at getting the metadata to work with the PMR2 processor Dougal Cowan 2012-08-17 Re-added species, reverted to accented characters https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/ef51097b464086098febbb4c150292ce33e3cddc Re-added species, reverted to accented characters Dougal Cowan 2012-08-14 trying to fix the exposure error https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/b9bf9e1ca30fd0cc04cf12a45162d79175547d46 trying to fix the exposure error Dougal Cowan 2012-08-14 added metadata in RDF https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/5054aa82c531ca80ffeebe76fd855ee3dd5574ec added metadata in RDF Dougal Cowan 2012-08-14 need to make sure there are enough integration points to ensure the stimulus is picked up when running in SRuS. https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/5732fb0645c9a3b0fc2268b08ccd236819c2284a need to make sure there are enough integration points to ensure the stimulus is picked up when running in SRuS. David Nickerson 2011-11-17 update stimulus protocol to allow offset of applied stimulus from time 0 https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/b4e719b237a8d183ab7c7ab54db304722f726b0b update stimulus protocol to allow offset of applied stimulus from time 0 David Nickerson 2011-11-17 SRuS uses the namespaces defined in the source document to resolve xpath expressions, so need to define the correct set of namespaces in order to get simulations to run https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/85efe82cc60f41c7058d0e31ab4b82ea04471d36 SRuS uses the namespaces defined in the source document to resolve xpath expressions, so need to define the correct set of namespaces in order to get simulations to run David Nickerson 2011-11-16 update URL for SED-ML web tools https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/4e058b0581aecfa9270b720c31a48fd48e724de7 update URL for SED-ML web tools David Nickerson 2011-08-26 resize the image to fit within the model repository content pane https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/2593df010620dde185c41853d6264c30b12c4aa1 resize the image to fit within the model repository content pane David Nickerson 2011-08-25 adding a simple SED-ML document describing a single simulation which simulates one action potential. Also adding a screenshot taken to illustrate the result of this simulation experiment when run in the SED-ML web tools. https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/2d7a47386e8d9d50163289b79564f948c7cc1fab adding a simple SED-ML document describing a single simulation which simulates one action potential. Also adding a screenshot taken to illustrate the result of this simulation experiment when run in the SED-ML web tools. David Nickerson 2011-08-25 Original CellML 1.0 encoding of the ORd model contributed by Steven Niederer. This encoding is based on the Matlab code provided by the authors under the http://rudylab.wustl.edu/research/cell/ website. While the units in the CellML encoding are not yet perfect, it is a match for the Matlab code and matches the simulation output for a single beat perfectly. https://staging.physiomeproject.org/w/andre/SAN-ORd/@@file/c9e21a14ed7ec5532842e29146e8c2c3f0aea7c3 Original CellML 1.0 encoding of the ORd model contributed by Steven Niederer. This encoding is based on the Matlab code provided by the authors under the http://rudylab.wustl.edu/research/cell/ website. While the units in the CellML encoding are not yet perfect, it is a match for the Matlab code and matches the simulation output for a single beat perfectly. David Nickerson 2011-08-25