https://staging.physiomeproject.org/w/andre/VPH-MIP en-us VPH-MIP case study on CellML Models used in the VPH-MIP standards and ontologies module for the CellML case study. adding CellML 2.0 version of this model generated using the CellML1to2 XSL https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/bd1651a373bbed124d4bd763a86c32c2bf2f3ff0 adding CellML 2.0 version of this model generated using the CellML1to2 XSL David Nickerson 2019-11-04 updating documentation to better reflect the VPH-MIP slides and mention how to reproduce the simulation results; adding plot of gating variables added to the SED-ML https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/58e44de10bed7fbc87fd1d437f3001c7b653a738 updating documentation to better reflect the VPH-MIP slides and mention how to reproduce the simulation results; adding plot of gating variables added to the SED-ML David Nickerson 2012-10-05 updating SED-ML to point to the new workspace URL for this stipped down version of the HH model and experiment; added a plot for the gating variables which are now also exposed. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/864d147e9782221b03086ae6700acf3e95cb83d4 updating SED-ML to point to the new workspace URL for this stipped down version of the HH model and experiment; added a plot for the gating variables which are now also exposed. David Nickerson 2012-10-04 tidy up this stipped down version of my HH model to match the VPH-MIP slides; moving time to its own model; removing all cmeta's from the documents; exposing time and the gating variables via the outputs component in the periodic-stimulus experiment. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/30ab778d03a1aac5f3d62594a11c1757f5e35198 tidy up this stipped down version of my HH model to match the VPH-MIP slides; moving time to its own model; removing all cmeta's from the documents; exposing time and the gating variables via the outputs component in the periodic-stimulus experiment. David Nickerson 2012-10-04 forgot to remove this one too.. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/0d7a161fd0a7d4ee7ef3ed7a7ab3aaecab77f561 forgot to remove this one too.. David Nickerson 2012-10-04 cleaning up this fork of my original HH workspace to start bringing it in line with the VPH-MIP powerpoint slides https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/ab33c33041885516eb1ee83dbc9d1fab2b37dcb8 cleaning up this fork of my original HH workspace to start bringing it in line with the VPH-MIP powerpoint slides David Nickerson 2012-10-04 fixing up references to the tutorial to match what the exposure on the live site wants to used. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/930166f28bc386e6ad7611a3a8ee5ffd5a3490df fixing up references to the tutorial to match what the exposure on the live site wants to used. David Nickerson 2012-09-26 fixing up references to the tutorial to match what the exposure wants to used. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/4e4d6040a3c6df519d3106bbb61297b93c9c47bc fixing up references to the tutorial to match what the exposure wants to used. David Nickerson 2012-09-26 adding more information to the main documentation page for the workspace, including some useful direct links to various documents. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/6b9447fa179ec6c4ec0418f82b985750ce7fc2b7 adding more information to the main documentation page for the workspace, including some useful direct links to various documents. David Nickerson 2012-09-26 renaming the tutorial web page to work around a bug in making PMR2 exposures with files named index.html https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/eeb193d348e735266eae6b9948908adc88bc4c00 renaming the tutorial web page to work around a bug in making PMR2 exposures with files named index.html David Nickerson 2012-09-26 adding a bit more to the tutorial regarding instantiation in a simulation experiment. Adding a basic SED-ML for the action potential simulation and images of the results calculated using the SED-ML web tools. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/8ab1ec7d863da476b8ab55a47eac203ade558a60 adding a bit more to the tutorial regarding instantiation in a simulation experiment. Adding a basic SED-ML for the action potential simulation and images of the results calculated using the SED-ML web tools. David Nickerson 2012-09-26 adding a top-level HTML index page to use with the exposure https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/1c1b86d99e354143412d753df2ed80d9e92dcaf2 adding a top-level HTML index page to use with the exposure David Nickerson 2012-09-25 updates with more information from the presentation https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/1f279bed1a35a70dcac0f000174185f827c5cc91 updates with more information from the presentation David Nickerson 2012-09-25 starting to add a bit of documentation following the slides I put together for the VPH-MIP standardisation and ontologies module. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/036dadde90835505fa089b9d33be0bf5b4e6db24 starting to add a bit of documentation following the slides I put together for the VPH-MIP standardisation and ontologies module. David Nickerson 2012-09-25 moving all metadata to external files to clean up the CellML code for tutorial purposes. Using my new rdfExtrator tool to do the work. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/6e2bed224b4a37b5a92f3e5031f8917f4c69fc8f moving all metadata to external files to clean up the CellML code for tutorial purposes. Using my new rdfExtrator tool to do the work. David Nickerson 2012-09-24 replacing CellML simulation metadata with CSim summary description; bubbling up membrane currents and potential to allow output/referencing via SED-ML. https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/a29bfba242e747b82657c6d2d782937d0a01be79 replacing CellML simulation metadata with CSim summary description; bubbling up membrane currents and potential to allow output/referencing via SED-ML. David Nickerson 2012-08-28 adding initial copy of related CellML models and supporting data from my HH reference description example (see: http://www.bioeng.nus.edu.sg/compbiolab/p3/) https://staging.physiomeproject.org/w/andre/VPH-MIP/@@file/25a4d94fdf146e3e5325a0250283ab25b4af010a adding initial copy of related CellML models and supporting data from my HH reference description example (see: http://www.bioeng.nus.edu.sg/compbiolab/p3/) David Nickerson 2010-08-26