Location: VPH-MIP case study on CellML @ 25a4d94fdf14 / experiments / runAll.pl

Author:
David Nickerson <nickerso@users.sourceforge.net>
Date:
2010-08-26 10:43:31+12:00
Desc:
adding initial copy of related CellML models and supporting data from my HH reference description example (see: http://www.bioeng.nus.edu.sg/compbiolab/p3/)
Permanent Source URI:
https://staging.physiomeproject.org/w/andre/VPH-MIP/rawfile/25a4d94fdf146e3e5325a0250283ab25b4af010a/experiments/runAll.pl
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#!/usr/bin/perl

use strict;

my $exe = "$ENV{HOME}/sf.net/CellMLSimulator/build/release/CellMLSimulator";
my $output = "generated";

mkdir $output;

my @experiments = ("IK-gating-kinetics","INa-gating-kinetics",
                   "periodic-stimulus","voltage-clamp");

foreach my $exp (@experiments) {
  my $o = $output . "/" . $exp;
  my $g = $exp . "-graphs.xml";
  mkdir $o;
  system("$exe --graph-directory=$o --reference-description --data=$o/data.h5 $g");
}