Some test SED-ML to play with the nested proposal

https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting en-us Some test SED-ML to play with the nested proposal A place to store and track SED-ML documents which demonstrate various aspects of the various proposals to extend SED-ML with nested tasks and/or simulations (http://sourceforge.net/tracker/?func=detail&aid=3391860&group_id=293618&atid=2532228). also need to update the CellML namespace https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/9def2d7f03b8cd9a7b2471dba578106687bf5faf also need to update the CellML namespace David Nickerson 2015-05-25 change back to local model https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/b956df286af04c75b67ab47cf881131b0e9056db change back to local model David Nickerson 2015-05-25 testing repeated tasks https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/f20fe7a4f4c1f89b15db184e365350de725ee715 testing repeated tasks David Nickerson 2015-05-22 Add some unit test style simulations of a very simple single ODE model, in https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/0382d975a69edd8a34c13bbb8b57e47d6856f285 Add some unit test style simulations of a very simple single ODE model, in order to check that implementations are processing the proposed extension elements as expected. Jonathan Cooper 2012-09-05 adding an initial HTML page documenting the purpose of this workspace https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/b7a029b08a1f4929dde6aa20a0327606f0c78777 adding an initial HTML page documenting the purpose of this workspace David Nickerson 2012-05-25 adding screenshot showing results of 'repeated' simulation with the various cell types and stimulus times for the ORd model. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/6ee8fc48fc304bb27026c940d3bdfa584e4bdb09 adding screenshot showing results of 'repeated' simulation with the various cell types and stimulus times for the ORd model. David Nickerson 2012-05-25 adding initial SED-ML describing the nested tasks from nestedTask-cellType-stimulusTime-ORd.xml as 3*3=9 separate tasks with 9 different CellML models. Runs in SED-ML Web Tools to produce the expected action potentials. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/468e44fa073725dfbb7fa349f7ef61b42bc7ba38 adding initial SED-ML describing the nested tasks from nestedTask-cellType-stimulusTime-ORd.xml as 3*3=9 separate tasks with 9 different CellML models. Runs in SED-ML Web Tools to produce the expected action potentials. David Nickerson 2012-05-25 adding the different model configurations to duplicate the nested repeated tasks in nestedTask-cellType-stimulusTime-ORd, at least for a couple of steps in the inner sub task. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/d83657a1d7c40bdd9c6a7f8c2352f17f855f2919 adding the different model configurations to duplicate the nested repeated tasks in nestedTask-cellType-stimulusTime-ORd, at least for a couple of steps in the inner sub task. David Nickerson 2012-05-25 adding screenshot showing results of 'repeated' simulation with the various cell types for the ORd model. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/bfcbd92215ef231d1e3a12a396c6ff33f5314aa5 adding screenshot showing results of 'repeated' simulation with the various cell types for the ORd model. David Nickerson 2012-05-25 adding initial SED-ML describing the nested tasks from nestedTask-cellType-ORd.xml as three separate tasks with three different CellML models. Runs in SED-ML Web Tools to produce the expected action potentials. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/cbb19e3cc4ccd3e9ee72b4d7f51b13f77f8e8f61 adding initial SED-ML describing the nested tasks from nestedTask-cellType-ORd.xml as three separate tasks with three different CellML models. Runs in SED-ML Web Tools to produce the expected action potentials. David Nickerson 2012-05-25 adding three variants of the ORd model with the three different cell type values. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/07be036ad5f69b69b9ab38d433e3ca597a0936ba adding three variants of the ORd model with the three different cell type values. David Nickerson 2012-05-25 adding a second example using the ORd electrophysiology model with nested repeat tasks which now iterate over each of the three supported cell types and apply the stimulus current at multiple times. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/0b3ce74c3413037b50b32f6ce8a80d9ba9472662 adding a second example using the ORd electrophysiology model with nested repeat tasks which now iterate over each of the three supported cell types and apply the stimulus current at multiple times. David Nickerson 2012-05-24 adding an example which uses the repeated task variant of the nesting proposal to perform a simple 'parameter scan' which would perform the default simulation with the various cell types supported by the human cardiac cellular electrophysiology model used in this example. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/17f689beec7ebd72450b5c1e67f9e57bf4cce487 adding an example which uses the repeated task variant of the nesting proposal to perform a simple 'parameter scan' which would perform the default simulation with the various cell types supported by the human cardiac cellular electrophysiology model used in this example. David Nickerson 2012-05-24 adding nested test case using the nested/repeated task variant of the proposal which would offset the computed sine wave if computed. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/a60e745c1bd8017c31d3f81f427739dc0daa65d4 adding nested test case using the nested/repeated task variant of the proposal which would offset the computed sine wave if computed. David Nickerson 2012-05-24 adding nested test case using the nested simulation variant of the proposal which would offset the computed sine wave if computed. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/c4d3a9998e336b8e412055ef89f6731f067c7088 adding nested test case using the nested simulation variant of the proposal which would offset the computed sine wave if computed. David Nickerson 2012-05-24 adding a simple test SED-ML with multiple CellML models using the same simple sine test model https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/1021f64a2162ba0329ec3f09d430135d78d23fb7 adding a simple test SED-ML with multiple CellML models using the same simple sine test model David Nickerson 2012-05-24 adding Frank's demonstration parameter scan SED-ML from the Web Tools demonstration. https://staging.physiomeproject.org/w/andre/testing-Sed-ML-nesting/@@file/f2141253ab70627bb6497183f5304c1e81f01a15 adding Frank's demonstration parameter scan SED-ML from the Web Tools demonstration. David Nickerson 2012-05-24