Location: Latency correlates with period in a model for signal-induced Ca2+ oscillations based on Ca2+induced Ca2+ release @ ea41319bee6a / dupont_berridge_godbeter_1990.cellml

Author:
Mohammad Amin Adibi <madi566@aucklanduni.ac.nz>
Date:
2011-09-01 16:19:29+12:00
Desc:
Added Cell ML file and session fil
Permanent Source URI:
https://staging.physiomeproject.org/w/hnielsen/dupont_berridge_goldbeter_1990/rawfile/ea41319bee6a30c5132a9293d4e0024e3785074a/dupont_berridge_godbeter_1990.cellml

<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="dmvYMrSHn1w" name="Dupont_1990"><component name="environment"><variable cmeta:id="environment_time" name="time" public_interface="out" units="min"/></component><component name="flux"><variable cmeta:id="flux_Z" initial_value="0.2" name="Z" units="uM"/><variable cmeta:id="flux_Y" initial_value="0.2" name="Y" units="uM"/><variable initial_value="2.7" name="v0" units="uM_per_min"/><variable initial_value="4" name="v1" units="uM_per_min"/><variable name="v2" units="uM_per_min"/><variable name="v3" units="uM_per_min"/><variable name="Beta" units="dimensionless"/><variable initial_value="1" name="k_f" units="per_min"/><variable initial_value="10" name="k" units="per_min"/><variable initial_value="65" name="V_M2" units="uM_per_min"/><variable initial_value="500" name="V_M3" units="uM_per_min"/><variable initial_value="1" name="K_2" units="uM"/><variable initial_value="0.9" name="K_A" units="uM"/><variable initial_value="2" name="K_R" units="uM"/><variable initial_value="2" name="m" units="dimensionless"/><variable initial_value="4" name="p" units="dimensionless"/><variable initial_value="2" name="n" units="dimensionless"/><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq/><apply><diff/><bvar><ci>time</ci></bvar><ci>Z</ci></apply><apply><minus/><apply><plus/><apply><minus/><apply><plus/><ci>v0</ci><apply><times/><ci>v1</ci><ci>Beta</ci></apply></apply><ci>v2</ci></apply><ci>v3</ci><apply><times/><ci>k_f</ci><ci>Y</ci></apply></apply><apply><times/><ci>k</ci><ci>Z</ci></apply></apply></apply><apply><eq/><apply><diff/><bvar><ci>time</ci></bvar><ci>Y</ci></apply><apply><minus/><apply><minus/><ci>v2</ci><ci>v3</ci></apply><apply><times/><ci>k_f</ci><ci>Y</ci></apply></apply></apply><apply><eq/><ci>v2</ci><apply><times/><ci>V_M2</ci><apply><divide/><apply><power/><ci>Z</ci><ci>n</ci></apply><apply><plus/><apply><power/><ci>K_2</ci><ci>n</ci></apply><apply><power/><ci>Z</ci><ci>n</ci></apply></apply></apply></apply></apply><apply><eq/><ci>v3</ci><apply><times/><ci>V_M3</ci><apply><divide/><apply><power/><ci>Y</ci><ci>m</ci></apply><apply><plus/><apply><power/><ci>K_R</ci><ci>m</ci></apply><apply><power/><ci>Y</ci><ci>m</ci></apply></apply></apply><apply><divide/><apply><power/><ci>Z</ci><ci>p</ci></apply><apply><plus/><apply><power/><ci>K_A</ci><ci>p</ci></apply><apply><power/><ci>Z</ci><ci>p</ci></apply></apply></apply></apply></apply><apply><eq/><ci>Beta</ci><apply><times/><ci>Beta_f</ci><apply><minus/><cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">1</cn><apply><exp/><apply><divide/><apply><minus/><ci>time</ci></apply><ci>t_c</ci></apply></apply></apply></apply></apply></math><variable name="time" public_interface="in" units="min"/><variable initial_value="0.8" name="t_c" units="min"/><variable initial_value="0.15" name="Beta_f" units="dimensionless"/></component><units name="uM"><unit exponent="-6" units="mole"/><unit exponent="-1" units="litre"/></units><units name="min"><unit multiplier="60" units="second"/></units><units name="per_min"><unit exponent="-1" units="min"/></units><units name="uM_per_min"><unit units="uM"/><unit units="per_min"/></units><connection><map_components component_1="environment" component_2="flux"/><map_variables variable_1="time" variable_2="time"/></connection><rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"><rdf:Description rdf:about="#dmvYMrSHn1w"><simulation xmlns="http://www.cellml.org/metadata/simulation/1.0#"><rdf:Description rdf:nodeID="n1"/></simulation></rdf:Description><rdf:Description rdf:nodeID="n1"><boundIntervals xmlns="http://www.cellml.org/metadata/simulation/1.0#"><rdf:Description rdf:nodeID="n2"/></boundIntervals></rdf:Description><rdf:Description rdf:nodeID="n2"><rdf:first><rdf:Description rdf:nodeID="n3"/></rdf:first><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n3"><endingValue xmlns="http://www.cellml.org/metadata/simulation/1.0#" xml:lang="en">7</endingValue><maximumStepSize xmlns="http://www.cellml.org/metadata/simulation/1.0#" xml:lang="en">0.001</maximumStepSize></rdf:Description></rdf:RDF></model>