Location: Mitochondria regulate the amplitude of simple and complex calcium oscillations @ f78690e2f464 / grubelnik_2001_2a.session.xml

Author:
Hanne Nielsen <hnie010@aucklanduni.ac.nz>
Date:
2011-09-26 13:51:05+13:00
Desc:
Added cellML models for 2a, 2b, 3a, 3b, 4a and 4b and clickable sessions.
Permanent Source URI:
https://staging.physiomeproject.org/w/hnielsen/grubelnik_2001/rawfile/f78690e2f46454aa4ef277c8a5e8eabda2b8759c/grubelnik_2001_2a.session.xml
Compare... Download Source 

<?xml version="1.0"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph3"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n1"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n2"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n3"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n4"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n5"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour></rdf:Description><rdf:Description rdf:about="grubelnik_2001_2a.cellml"><derivedmodels xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n6"/></derivedmodels><modelname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">grubelnik_2001_2a</modelname><modelfrozen xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</modelfrozen><modelfrozen xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</modelfrozen><derivedmodels xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n6"/></derivedmodels><modelname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">grubelnik_2001_2a</modelname></rdf:Description><rdf:Description rdf:nodeID="n7"><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Traces against Time</graphname><decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Traces against Time</graphname><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n8"/></traces></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/displayGraphs"><rdf:first><rdf:Description rdf:nodeID="n9"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph1"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n10"><rdf:rest><rdf:Description rdf:nodeID="n1"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n11"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n12"><rdf:rest><rdf:Description rdf:nodeID="n13"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n14"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n15"><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Clickable SVG</graphname>

<externalurl xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">grubelnik_2001.xul</externalurl>
<externalurl xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">grubelnik_2001.xul</externalurl>

<decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Clickable SVG</graphname><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n16"/></traces></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph3"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n17"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n18"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n3"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n19"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n20"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n21"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour></rdf:Description><rdf:Description rdf:nodeID="n22"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/loadedModels"><rdf:_1><rdf:Description rdf:about="grubelnik_2001_2a.cellml"/></rdf:_1></rdf:Description><rdf:Description rdf:nodeID="n23"><rdf:rest><rdf:Description rdf:nodeID="n12"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n24"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n25"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#J_ERpump_J_ERpump"/></variable></rdf:Description><rdf:Description rdf:nodeID="n11"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n26"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n27"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#1940ef</colour></rdf:Description><rdf:Description rdf:nodeID="n20"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n28"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n2"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n29"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n30"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#290029</colour></rdf:Description><rdf:Description rdf:nodeID="n31"><rdf:rest><rdf:Description rdf:nodeID="n10"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n32"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/displayGraphs"><rdf:first><rdf:Description rdf:nodeID="n9"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n33"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n16"><rdf:first><rdf:Description rdf:nodeID="n18"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n24"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n28"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n34"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#c824e3</colour></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/modlayoutsplit"><splitterState_nextWidth xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">1047</splitterState_nextWidth><splitterState_nextWidth xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">1047</splitterState_nextWidth><splitterState_prevWidth xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">211</splitterState_prevWidth></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph3"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n35"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#J_ERleak_J_ERleak"/></variable></rdf:Description><rdf:Description rdf:nodeID="n36"><rdf:first><rdf:Description rdf:nodeID="n37"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n32"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n22"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n35"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#fa15c3</colour></rdf:Description><rdf:Description rdf:nodeID="n34"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#Ca_ER_Ca_ER"/></variable></rdf:Description><rdf:Description rdf:nodeID="n38"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n13"><rdf:rest><rdf:Description rdf:nodeID="n31"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n39"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/intergraph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n14"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n33"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n40"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#fde36a</colour></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph1"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n7"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n37"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n41"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n21"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#Ca_cyt_Ca_cyt"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/loadedModels"><rdf:_2><rdf:Description rdf:about="grubelnik_2001_2a.cellml"/></rdf:_2></rdf:Description><rdf:Description rdf:nodeID="n17"><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Untitled</graphname><decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Untitled</graphname><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n36"/></traces></rdf:Description><rdf:Description rdf:nodeID="n29"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph3"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n17"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n39"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n38"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n25"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#b4e379</colour></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph2"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n15"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n27"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#J_in_J_in"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph2"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n15"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n26"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n8"><rdf:first><rdf:Description rdf:nodeID="n42"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph1"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n7"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n30"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#J_out_J_out"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph2"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n40"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="grubelnik_2001_2a.cellml#J_ERch_J_ERch"/></variable></rdf:Description><rdf:Description rdf:nodeID="n41"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n43"/></variable><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n44"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour></rdf:Description><rdf:Description rdf:nodeID="n45"><rdf:rest><rdf:Description rdf:nodeID="n46"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n15"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph1"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/modlayoutsplit"><splitterState_prevWidth xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">211</splitterState_prevWidth></rdf:Description><rdf:Description rdf:nodeID="n9"><rdf:rest><rdf:Description rdf:nodeID="n45"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n17"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n46"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n7"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n42"><rdf:rest><rdf:Description rdf:nodeID="n23"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n19"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/intergraph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description></rdf:RDF>