Location: Metabolic Component Library @ c7ae7a1000a5 / components.html
- Author:
- Matthias K?nig <matthias.koenig@charite.de>
- Date:
- 2013-04-18 16:08:50+02:00
- Desc:
- Changes in Ingegrator and file hierarchy.
- Permanent Source URI:
- https://staging.physiomeproject.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/c7ae7a1000a5a0abf70a966b6228c623fc30ae50/components.html
Metabolic Component Library for CellML
Matthias Koenig [1] & Randall Britten [2][1] Charite Berlin, matthias.koenig@charite.de
[2] Auckland Bioengineering Institute
Implementation of standardized reaction kinetics in CellML for reuse in metabolic models. The library covers the metabolic function definitions for processes from COPASI 4.8 (Bulid 35).
Components
Substrate(s) : S (S1, S2, ...)Product(s) : P (P1, P2, ... )
Inhibitor(s) : I (I1, I2, ...)
Activator(s) : A (A1, A2, ...)
Modifier(s) : M (M1, M2, ...)
AllostericInhibitionEmpirical
![]() J [mM_per_second] S [mM] P [mM] I [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] n [dimensionless] Ki [mM] |
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Mechanisms UniUniRev_I |
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AllostericInhibitionMWC
![]() J [mM_per_second] S [mM] I [mM] V [mM_per_second] Km_S [mM] n [dimensionless] L [dimensionless] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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BiIrrev
![]() J [mM_per_second] S1 [mM] S2 [mM] V [mM_per_second] Km_S1 [mM] Km_S2 [mM] |
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Mechanisms BiNullIrrev BiBiIrrev BiUniIrrev |
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CatalyticActivationIrrev
![]() J [mM_per_second] S [mM] A [mM] V [mM_per_second] Km_S [mM] Km_A [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
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CatalyticActivationRev
![]() J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Km_A [mM] |
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Mechanisms UniUniRev_A |
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CompetitiveInhibitionIrrev
![]() J [mM_per_second] S [mM] I [mM] V [mM_per_second] Km_S [mM] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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CompetitiveInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] I [mM] Km_S [mM] Km_P [mM] Ki [mM] |
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Mechanisms UniUniRev_I |
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ConstantFluxIrrev
![]() J [mM_per_second] V [mM_per_second] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev BiBiIrrev BiUniIrrev |
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Hill1ModifierRev
![]() J [mM_per_second] S [mM] P [mM] M [mM] V [mM_per_second] Keq [dimensionless] Km_S [mM] Km_P [mM] Km_M [mM] a [dimensionless] h [dimensionless] |
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Mechanisms UniUniRev_M |
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Hill2ModifierRev
HillIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] n [dimensionless] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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HillRev
![]() J [mM_per_second] S [mM] P [mM] V [mM_per_second] Keq [dimensionless] Km_S [mM] Km_P [mM] h [dimensionless] |
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Mechanisms UniUniRev |
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HyperbolicModifierIrrev
![]() J [mM_per_second] S [mM] M [mM] V [mM_per_second] Kd [mM] Km_S [mM] a [dimensionless] b [dimensionless] |
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Mechanisms UniNullIrrev_M UniUniIrrev_M UniBiIrrev_M |
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HyperbolicModifierRev
![]() J [mM_per_second] S [mM] P [mM] M [mM] V_f [mM_per_second] V_b [mM_per_second] Kd [mM] Km_S [mM] Km_P [mM] a [dimensionless] b [dimensionless] |
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Mechanisms UniUniRev_M |
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IsoUniUni
![]() J [mM_per_second] S [mM] P [mM] V [mM_per_second] Keq [dimensionless] Ki [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev |
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MassActionBiBiRev
![]() J [mM_per_second] S1 [mM] S2 [mM] P1 [mM] P2 [mM] k_f [per_mM_per_second] k_b [per_mM_per_second] |
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Mechanisms BiBiRev |
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MassActionBiIrrev
![]() J [mM_per_second] S1 [mM] S2 [mM] k_f [per_mM_per_second] |
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Mechanisms BiNullIrrev BiBiIrrev BiUniIrrev |
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MassActionBiUniRev
![]() J [mM_per_second] S1 [mM] S2 [mM] P [mM] k_f [per_mM_per_second] k_b [per_second] |
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Mechanisms BiUniRev |
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MassActionUniBiRev
![]() J [mM_per_second] S [mM] P1 [mM] P2 [mM] k_f [per_second] k_b [per_mM_per_second] |
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Mechanisms UniBiRev |
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MassActionUniIrrev
![]() J [mM_per_second] S [mM] k_f [per_second] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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MassActionUniUniRev
![]() J [mM_per_second] S [mM] P [mM] k_f [per_second] k_b [per_second] |
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Mechanisms UniUniRev |
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MichaelisMentenIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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MichaelisMentenRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev |
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MixedActivationIrrev
![]() J [mM_per_second] S [mM] A [mM] V [mM_per_second] Kac [mM] Kas [mM] Km_S [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
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MixedActivationRev
![]() J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Kac [mM] Kas [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev_A |
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MixedInhibitionIrrev
![]() J [mM_per_second] S [mM] I [mM] V [mM_per_second] Kis [mM] Kic [mM] Km_S [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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MixedInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] I [mM] V_f [mM_per_second] V_b [mM_per_second] Kis [mM] Kic [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev_I |
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NoncompetitiveInhibitionIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] I [mM] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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NoncompetitiveInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] I [mM] Ki [mM] |
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Mechanisms UniUniRev_I |
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OrderedBiBi
OrderedBiUni
![]() J [mM_per_second] S1 [mM] S2 [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Keq [per_mM] Km_S1 [mM] Km_S2 [mM] Km_P [mM] Ki_S1 [mM] |
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Mechanisms BiUniRev |
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OrderedUniBi
![]() J [mM_per_second] S [mM] P1 [mM] P2 [mM] V_f [mM_per_second] V_b [mM_per_second] Keq [mM] Km_S [mM] Km_P1 [mM] Km_P2 [mM] Ki_P1 [mM] |
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Mechanisms UniBiRev |
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PingPongBiBi
SpecificActivationIrrev
![]() J [mM_per_second] S [mM] A [mM] V [mM_per_second] Km_S [mM] Km_A [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
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SpecificActivationRev
![]() J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Km_A [mM] |
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Mechanisms UniUniRev_A |
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SubstrateActivationIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] K_sa [mM] K_sc [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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SubstrateInhibitionIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] I [mM] Km_S [mM] Ki [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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SubstrateInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Ki [mM] |
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Mechanisms UniUniRev |
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UncompetitiveInhibitionIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] I [mM] Km_S [mM] K_I [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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