Location: Metabolic Component Library @ e0e2c28e2dfd / CellML-source / CellMLTools / src / componentlibrary / cis / CodeGeneratorTest.java

Author:

Tommy Yu <tommy.yu@auckland.ac.nz>

Date:

2015-02-12 19:28:32+13:00

Desc:

Merging to remove the extra head - Since the title is changed and in the interest of maintaining the current structure we keep it as is.

Permanent Source URI:

https://staging.physiomeproject.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/e0e2c28e2dfdfe37ea2cae3390a6ae26c28a3393/CellML-source/CellMLTools/src/componentlibrary/cis/CodeGeneratorTest.java

package componentlibrary.cis;

import tools.CellMLReader;
import cellml_api.CellMLBootstrap;
import cellml_api.Model;
import cellml_services.CodeGenerator;
import cellml_services.CodeGeneratorBootstrap;
import cellml_services.CodeInformation;
import cellml_services.IDACodeGenerator;

/** Generate C & Python Code from a given model */
public class CodeGeneratorTest {

	/* Use CCGS to generate code analog to 
	* 		CellML2C.cpp
	* 		CellML2Python.cpp
	*/
	private static void generateCode(Model model, boolean useida){
		System.loadLibrary("java_ccgs");
		CodeGeneratorBootstrap cgBootstrap = cellml_bootstrap.CCGSBootstrap.createCodeGeneratorBootstrap();
		
		model.fullyInstantiateImports();
		CodeInformation codeInfo = null;
		if (useida){
			CodeGenerator cg = cgBootstrap.createCodeGenerator();
			codeInfo = cg.generateCode(model);
		} else {
			IDACodeGenerator cgida = cgBootstrap.createIDACodeGenerator();
			codeInfo = cgida.generateCode(model);
		}
		
		// print errors
		String error = codeInfo.getErrorMessage();
		if (error!=null && error.length()>0){
			System.err.println("Code generation error: " + error);
			return;
		}
		
		//the usenames stuff form CellML2C & VellML2Python
		// -> doNameAnnotations()
		
		// How to write the code ???
		System.out.println("*** Code Generated ***");
		System.out.println("NONE: " +  codeInfo.toString());
		
		// String code = ??	
		// uses the -> WriteCode() functions in CellML2C & CellML2Python
		// but not accessible via the API ?
	}
	
	
	public static void main (String[] args){
		System.loadLibrary("java_cellml");
	    CellMLBootstrap bootstrap =  cellml_bootstrap.CellMLBootstrap.createCellMLBootstrap();
		Model model = CellMLReader.loadFromURL(bootstrap, "MassActionBiBiRev.cellml");
		generateCode(model, true);
	}
}