Location: SVP Template Library @ 0bb70b3dfe70 / Template_Promoter_PartiallyInductive.cellml

Author:

Mike Cooling <m.cooling@auckland.ac.nz>

Date:

2011-06-10 16:03:55+12:00

Desc:

Initial adds

Permanent Source URI:

https://staging.physiomeproject.org/w/mcoo001/svp_templates/rawfile/0bb70b3dfe705d5e36f1aa0ef90c6208e3e6084d/Template_Promoter_PartiallyInductive.cellml

<?xml version="1.0" encoding="utf-8"?>

<model name="Template_Promoter_PartiallyInductive" cmeta:id="Template_Promoter_PartiallyInductive"
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:dc="http://purl.org/dc/elements/1.0/"
    xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
    >
        
    <rdf:RDF>
            <rdf:Description rdf:about="#Template_Promoter_PartiallyInductive">
            <dc:creator>
            <vCard:N rdf:parseType="Resource">
                <vCard:Family>Cooling</vCard:Family>
                <vCard:Given>Mike</vCard:Given>
            </vCard:N>
            <vCard:EMAIL rdf:parseType="Resource">
                <rdf:value>m.cooling@auckland.ac.nz</rdf:value>
                <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
            </vCard:EMAIL>
            <vCard:ORG rdf:parseType="Resource">
                <vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
                <vCard:Orgunit>University of Auckland</vCard:Orgunit>
            </vCard:ORG>
            </dc:creator>
            </rdf:Description>
   </rdf:RDF>
    
   <units name="per_s">
         <unit units="second" exponent="-1"/>
   </units>
   <units name="femtoliter">
      <unit units="liter" prefix="femto"/>
   </units>
   <units name="perfemto">
      <unit units="dimensionless" prefix="femto" exponent="-1"/>
   </units>
   <units name="M">
      <unit units="mole"/>
      <unit units="liter" exponent="-1"/>
   </units>
   <units name="nM">
      <unit units="M" prefix="nano"/>
   </units>
   <units name="nanos">
      <unit units="dimensionless" prefix="nano"/>
   </units>
   <units name="nM_per_s">
      <unit units="nM"/>
      <unit units="per_s"/>
   </units>
   <units name="per_mole">
      <unit units="mole" exponent="-1"/>
   </units>
   <units name="PoPs">
      <unit units="second" exponent="-1"/>
   </units>
  
   <component name="Template_Promoter_PartiallyInductive">
       <variable name="JRNA" units="nM_per_s" public_interface="out"/>
            <variable name="localVolume" units="femtoliter" public_interface="in"/>
            <variable name="avogadrosConstant" units="per_mole" initial_value="6.0221415e23"/>
            <variable name="k" units="PoPs" public_interface="in"/>
            <variable name="tFactor" units="nM" public_interface="in"/>
            <variable name="n" units="dimensionless" public_interface="in"/>
            <variable name="Km" units="nM" public_interface="in"/>
            <variable name="basalProportion" units="dimensionless" public_interface="in"/>
            <math xmlns="http://www.w3.org/1998/Math/MathML">
               <apply>
                  <eq/>
                  <ci>JRNA</ci>
                  <apply>
                     <divide/>
                     <apply>
                        <times/>
                        <apply>
                        	<plus/>
				<apply>
				   <divide/>
				   <apply>
				      <times/>
				      	<apply>
				      		<minus/>
				      		<cn cellml:units="dimensionless">1</cn>
				      		<ci>basalProportion</ci>
				      	</apply>
				        <ci>k</ci>
				        <apply>
					  <power/>
					    <ci>tFactor</ci>
					    <ci>n</ci>
				        </apply>
				   </apply>
				   <apply>
				      <plus/>
				      <apply>
					<power/>
					   <ci>Km</ci>
					   <ci>n</ci>
				      </apply>
				      <apply>
					<power/>
					   <ci>tFactor</ci>
					   <ci>n</ci>
				      </apply>
				   </apply>
				</apply>
				
				<apply>
					<times/>
					<ci>basalProportion</ci>
					<ci>k</ci>
				</apply>
				
			</apply>
                        <cn type="e-notation" cellml:units="nanos">1.0<sep/>9</cn>
                     </apply>
                     <apply>
                        <times/>
                        <ci>localVolume</ci>
                        <cn type="e-notation" cellml:units="perfemto">1.0<sep/>-15</cn>
                        <ci>avogadrosConstant</ci>
                     </apply>
                  </apply>
               </apply>
      	   </math>
   </component>
</model>