- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2013-10-07 22:20:12+13:00
- Desc:
- defining a common units map which maps the actual units we define to common names for use in all our models, this allows single changes to trickle through to all the models easily; updating all the small-molecule models to use these units; couple more correction in the default passive cell model picked up in the process
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/19f/rawfile/1efa664910786269c8ea26391e689f789f542850/units/units.xml
<?xml version="1.0" encoding="iso-8859-1"?>
<model name="units" cmeta:id="units" xmlns="http://www.cellml.org/cellml/1.1#"
xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="">
<dc:creator rdf:parseType="Resource">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet" />
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</dc:creator>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2004-12-27</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Bioengineering Institute, The University of Auckland
</dc:publisher>
</rdf:Description>
<rdf:Description rdf:about="#units">
<dc:title>
Some useful units.
</dc:title>
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
A CellML description of some of the common units used in whole cell
models.
</rdf:value>
<dc:creator rdf:parseType="Resource">
<vCard:FN>David Nickerson</vCard:FN>
</dc:creator>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<units name="mm">
<unit units="metre" prefix="milli" />
</units>
<units name="cm">
<unit units="metre" prefix="centi" />
</units>
<units name="ng">
<unit units="gram" prefix="nano" />
</units>
<units name="ms">
<unit units="second" prefix="milli" />
</units>
<units name="uA">
<unit units="ampere" prefix="micro" />
</units>
<units name="pA">
<unit units="ampere" prefix="pico" />
</units>
<units name="K">
<unit units="kelvin" />
</units>
<units name="nmol">
<unit units="mole" prefix="nano" />
</units>
<units name="mmsq">
<unit units="mm" exponent="2" />
</units>
<units name="mmcu">
<unit units="mm" exponent="3" />
</units>
<units name="cmsq">
<unit units="cm" exponent="2" />
</units>
<units name="cmcu">
<unit units="cm" exponent="2" />
</units>
<units name="cmsq_per_cmsq">
<unit units="cmsq"/>
<unit units="cmsq" exponent="-1"/>
</units>
<units name="cmcu_per_cmsq">
<unit units="cmcu"/>
<unit units="cmsq" exponent="-1"/>
</units>
<units name="mssq">
<unit units="ms" exponent="2" />
</units>
<units name="mscu">
<unit units="ms" exponent="3" />
</units>
<units name="mV">
<unit units="volt" prefix="milli" />
</units>
<units name="mVsq">
<unit units="mV" exponent="2" />
</units>
<units name="mV_per_ms">
<unit units="mV" />
<unit units="ms" exponent="-1" />
</units>
<units name="mS">
<unit units="siemens" prefix="milli" />
</units>
<units name="mS_per_mmsq">
<unit units="mS" />
<unit units="mm" exponent="-2" />
</units>
<units name="mS_per_mm">
<unit units="mS" />
<unit units="mm" exponent="-1" />
</units>
<units name="uA_per_mmsq">
<unit units="uA" />
<unit units="mm" exponent="-2" />
</units>
<units name="uA_per_mmcu">
<unit units="uA" />
<unit units="mm" exponent="-3" />
</units>
<units name="nC">
<unit units="coulomb" prefix="nano" />
</units>
<units name="uF">
<unit units="farad" prefix="micro" />
</units>
<units name="uF_per_mmsq">
<unit units="uF" />
<unit units="mm" exponent="-2" />
</units>
<units name="mM">
<unit units="nmol" />
<unit units="mm" exponent="-3" />
</units>
<units name="mM_per_ms">
<unit units="mM" />
<unit units="ms" exponent="-1" />
</units>
<units name="nN">
<unit units="newton" prefix="nano" />
</units>
<units name="mPa">
<unit units="pascal" prefix="milli" />
</units>
<units name="pJ">
<unit units="joule" prefix="pico" />
</units>
<units name="nW">
<unit units="watt" prefix="nano" />
</units>
<units name="nS">
<unit units="siemens" prefix="nano" />
</units>
<units name="per_ms">
<unit units="ms" exponent="-1" />
</units>
<units name="per_mm">
<unit units="mm" exponent="-1" />
</units>
<units name="per_mV">
<unit units="mV" exponent="-1" />
</units>
<units name="per_mV_per_ms">
<unit units="mV" exponent="-1" />
<unit units="per_ms" />
</units>
<units name="per_mM_per_ms">
<unit units="mM" exponent="-1" />
<unit units="per_ms" />
</units>
<units name="uA_per_mmsq_per_mM">
<unit units="uA" />
<unit units="mm" exponent="-2" />
<unit units="mM" exponent="-1" />
</units>
<units name="mm_per_ms">
<unit units="mm" />
<unit units="per_ms" />
</units>
<units name="cm_per_ms">
<unit units="cm" />
<unit units="per_ms" />
</units>
<units name="gas_constant">
<unit units="pJ" />
<unit units="nmol" exponent="-1" />
<unit units="K" exponent="-1" />
</units>
<units name="faradays_constant">
<unit units="nC" />
<unit units="nmol" exponent="-1" />
</units>
<!-- These are some dodgy units from the ten Tusscher model -->
<units name="pA_per_pF">
<unit units="ampere" prefix="pico" />
<unit units="farad" prefix="pico" exponent="-1" />
</units>
<units name="nS_per_pF">
<unit units="siemens" prefix="nano" />
<unit units="farad" prefix="pico" exponent="-1" />
</units>
<units name="uF_per_cmsq">
<unit units="farad" prefix="micro" />
<unit units="metre" prefix="centi" exponent="-2" />
</units>
<units name="um">
<unit units="metre" prefix="micro" />
</units>
<units name="umsq">
<unit units="metre" prefix="micro" exponent="2" />
</units>
<units name="umcu">
<unit units="metre" prefix="micro" exponent="3" />
</units>
<units name="cmcu_per_uF_per_s">
<unit units="metre" prefix="centi" exponent="3" />
<unit units="farad" prefix="micro" exponent="-1" />
<unit units="second" exponent="-1" />
</units>
<units name="mmcu_per_uF_per_ms">
<unit units="metre" prefix="milli" exponent="3" />
<unit units="farad" prefix="micro" exponent="-1" />
<unit units="second" prefix="milli" exponent="-1" />
</units>
<units name="mM_per_s">
<unit units="mM" />
<unit units="second" exponent="-1" />
</units>
<units name="dyne">
<unit units="gram"/>
<unit units="cm"/>
<unit units="second" exponent="-2"/>
</units>
<units name="cmcu_per_dyne_per_s">
<unit units="cmcu"/>
<unit units="dyne" exponent="-1"/>
<unit units="second" exponent="-1"/>
</units>
<units name="s">
<unit units="second"/>
</units>
</model>
