https://staging.physiomeproject.org/workspace/25d en-us Models for the OpenCOR and PMR tutorial by Peter Hunter We provide here a collection of the models used in the OpenCOR and PMR tutorial written by Peter Hunter. The tutorial itself is available under https://www.cellml.org/getting-started/tutorials update Noble 62 SED-ML to match changes in the CellML https://staging.physiomeproject.org/workspace/25d/@@file/e3ef4cf57b9be0b9f5ccb72e98dac46f2381add5 update Noble 62 SED-ML to match changes in the CellML David Nickerson 2017-09-13 update HH IK SED-ML to match changes in OpenCOR. https://staging.physiomeproject.org/workspace/25d/@@file/c702d05c6a698b7b97dbb5b106600a16abfbff97 update HH IK SED-ML to match changes in OpenCOR. David Nickerson 2016-08-31 tweak the rdf now that we know what works https://staging.physiomeproject.org/workspace/25d/@@file/e5703023568b6c4320d43a3bddb4a7b0c13be5ed tweak the rdf now that we know what works David Nickerson 2016-03-22 typo in metadata https://staging.physiomeproject.org/workspace/25d/@@file/97073ce481e45394359a77373483e4c9cb8e4c8a typo in metadata David Nickerson 2016-03-22 adding a bit more metadata to see if it is picked up in PMR https://staging.physiomeproject.org/workspace/25d/@@file/00b1be3704a64b6d22a2a1b3ee165e4c42233266 adding a bit more metadata to see if it is picked up in PMR David Nickerson 2016-03-22 adding a bit more metadata to see if it is picked up in PMR https://staging.physiomeproject.org/workspace/25d/@@file/9fcdc0f49545c9fe3c027273ad749943aedc3b61 adding a bit more metadata to see if it is picked up in PMR David Nickerson 2016-03-22 typo in metadata https://staging.physiomeproject.org/workspace/25d/@@file/ce7704a8d48c9ad9c0b94660ff1c8b9983b830b4 typo in metadata David Nickerson 2016-03-22 adding a bit more metadata to see if it is picked up in PMR https://staging.physiomeproject.org/workspace/25d/@@file/edcfef6b91529dd86fbd10eaf601be1a1368d74d adding a bit more metadata to see if it is picked up in PMR David Nickerson 2016-03-22 adding a bit more metadata to see if it is picked up in PMR https://staging.physiomeproject.org/workspace/25d/@@file/58371cc0ada16d316be425112b38b779ed77cf6f adding a bit more metadata to see if it is picked up in PMR David Nickerson 2016-03-22 adding keyword to the HH potassium and sodium ion channels https://staging.physiomeproject.org/workspace/25d/@@file/1368c1579b759c5d50e3aa8de4dc3c69b567e8c0 adding keyword to the HH potassium and sodium ion channels David Nickerson 2016-03-22 moving potassium channel annotations to separate file to see if that works in PMR with keywords https://staging.physiomeproject.org/workspace/25d/@@file/0319be1b222392e93acb1a50b06c332a315cacdd moving potassium channel annotations to separate file to see if that works in PMR with keywords David Nickerson 2016-03-22 adding a keyword tag to try out the PMR indexing https://staging.physiomeproject.org/workspace/25d/@@file/26954df1266fd99cb760e997e5f44b8a87451e8b adding a keyword tag to try out the PMR indexing David Nickerson 2016-03-22 tidy up main exposure documentation https://staging.physiomeproject.org/workspace/25d/@@file/4a14d4176c9693626be5f2396176adb41e9d4d5a tidy up main exposure documentation David Nickerson 2016-03-21 adding docs for sodium channel example https://staging.physiomeproject.org/workspace/25d/@@file/aa2b4d93987036912c9b3699cabb2de4b6616961 adding docs for sodium channel example David Nickerson 2016-03-21 adding docs for potassium channel example https://staging.physiomeproject.org/workspace/25d/@@file/1ba3cf952aa12ead0d6c9c5706aab446495b9864 adding docs for potassium channel example David Nickerson 2016-03-21 adding the simple first order equation example documentation https://staging.physiomeproject.org/workspace/25d/@@file/7dbc82c7fe9ef996c59b9b92f16ed3c7b9058d71 adding the simple first order equation example documentation David Nickerson 2016-03-21 adding documentation for the lorenz attractor example https://staging.physiomeproject.org/workspace/25d/@@file/624d819080024432241ba46548e15069d3c86916 adding documentation for the lorenz attractor example David Nickerson 2016-03-21 trying to fix up hyperlink reference errors https://staging.physiomeproject.org/workspace/25d/@@file/2299296b88120e35bd9f5a17e434dafd1ea00688 trying to fix up hyperlink reference errors David Nickerson 2016-03-21 more work on documenation, now including the First order example https://staging.physiomeproject.org/workspace/25d/@@file/990498a498817b36dc4be70670c633d328a529ee more work on documenation, now including the First order example David Nickerson 2016-03-21 tweak docs for exposure processing https://staging.physiomeproject.org/workspace/25d/@@file/01c7f74b762a5fc892b2c6fb18525340919f4fe8 tweak docs for exposure processing David Nickerson 2016-03-21 update van der pol documentation and start work on structuring the documentation for the full workspace. https://staging.physiomeproject.org/workspace/25d/@@file/91f187d0042511c1745d471d580ee7f0aaa6d57f update van der pol documentation and start work on structuring the documentation for the full workspace. David Nickerson 2016-03-21 adding preliminary documentation for the Van der Pol model. https://staging.physiomeproject.org/workspace/25d/@@file/8878d53cc3e109cf01369495c84e95d0e65e1f81 adding preliminary documentation for the Van der Pol model. David Nickerson 2016-03-21 adding a SED-ML for the Noble 1962 model example https://staging.physiomeproject.org/workspace/25d/@@file/c584eab55e20fdc9cffb9d20a5d548b9910e18fd adding a SED-ML for the Noble 1962 model example David Nickerson 2016-03-17 adding SED-ML for HH model, but there is a problem with the current version of the model. https://staging.physiomeproject.org/workspace/25d/@@file/c5b4363e629e0c364da0590ae7ae18a433311818 adding SED-ML for HH model, but there is a problem with the current version of the model. David Nickerson 2016-03-17 seems the maximum step size needs to be set for the SED-ML for the sodium channel example https://staging.physiomeproject.org/workspace/25d/@@file/31aa609fc5a976bb65b2803a4bc24776d4ef612b seems the maximum step size needs to be set for the SED-ML for the sodium channel example David Nickerson 2016-03-17 adding SED-ML for the Hodgkin-Huxley sodium current example https://staging.physiomeproject.org/workspace/25d/@@file/46ffa273c788e9de16b17d8da5bc1cea2e6f4f9a adding SED-ML for the Hodgkin-Huxley sodium current example David Nickerson 2016-03-17 adding SED-ML for the Hodgkin-Huxley potassium current example https://staging.physiomeproject.org/workspace/25d/@@file/66e44ef897fca3e513c077adfff0380acbdc9bf2 adding SED-ML for the Hodgkin-Huxley potassium current example David Nickerson 2016-03-17 adding SED-ML for the simple first order ODE model https://staging.physiomeproject.org/workspace/25d/@@file/c4b85039efecd603ee0b9d4ad46e3015b91fdef7 adding SED-ML for the simple first order ODE model David Nickerson 2016-03-17 update first order ODE model to match tutorial description and add SED-ML for it. https://staging.physiomeproject.org/workspace/25d/@@file/60ac9389285471a704f2f4be6e1a8ba5cbf45d1a update first order ODE model to match tutorial description and add SED-ML for it. David Nickerson 2016-03-17 adding SED-ML for the first part of the Blue Sky Catastrophy model https://staging.physiomeproject.org/workspace/25d/@@file/8b61448c7ea1b1aedc16931d97a3036fe298b0a3 adding SED-ML for the first part of the Blue Sky Catastrophy model David Nickerson 2016-03-17 adding SED-ML for the Lorenz simulation https://staging.physiomeproject.org/workspace/25d/@@file/f0e63e292ebb1d6798da08914b4217aec434af96 adding SED-ML for the Lorenz simulation David Nickerson 2016-03-17 adding SED-ML version to match tutorial use of van der pol model https://staging.physiomeproject.org/workspace/25d/@@file/8a37f2ca3961ff783c054b5763364c596caa66bc adding SED-ML version to match tutorial use of van der pol model David Nickerson 2016-03-17 update to expose variables of interest at top level so that they are visible in OpenCOR following snapshot 2015-11-15. https://staging.physiomeproject.org/workspace/25d/@@file/f12f9de2cd7c65b90b09cb5858d006b5ecf34470 update to expose variables of interest at top level so that they are visible in OpenCOR following snapshot 2015-11-15. David Nickerson 2015-11-16 Change filenames to use the cellml extension. https://staging.physiomeproject.org/workspace/25d/@@file/aec9dd2760d3512135605017226531ac1d4d0d0f Change filenames to use the cellml extension. Hugh Sorby 2015-11-12 Rationlise names of Noble62 model. https://staging.physiomeproject.org/workspace/25d/@@file/d8eb5aacdb65f5fc1d38cdcf190a1415ea07a262 Rationlise names of Noble62 model. Hugh Sorby 2015-11-11 Adding more models from Peter for the initial models in the tutorial https://staging.physiomeproject.org/workspace/25d/@@file/d444fa733767787c1508a43205fccd787ecd27cc Adding more models from Peter for the initial models in the tutorial David Nickerson 2015-08-20 adding initial set of model files from Peter https://staging.physiomeproject.org/workspace/25d/@@file/2524c34af1ecae85d78e46a6c9103082b3ef0da3 adding initial set of model files from Peter David Nickerson 2015-08-20