- Author:
- Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
- Date:
- 2020-02-08 00:01:17+13:00
- Desc:
- updated the protocolSEDML.xml file
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/267/rawfile/00d5f4a8bfad4837a48a60ef3f8519ebf6bf8ebe/SEDML/protocol6A_weinstein_1995.rdf
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:semsim="http://www.bhi.washington.edu/SemSim#"
xmlns:dcterms="http://purl.org/dc/terms/">
<rdf:Description rdf:about="protocol6A_weinstein_1995.sedml#NHE3.C_ext_Na">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_3">
<semsim:physicalPropertyOf>
<rdf:Description rdf:about="#entity_0">
<ro:part_of>
<rdf:Description rdf:about="#entity_1">
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</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Concentration of sodium in the portion of renal filtrate in proximal convoluted tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol6A_weinstein_1995.sedml#NHE3.C_int_Na">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_4">
<semsim:physicalPropertyOf>
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<ro:part_of>
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<ro:part_of>
<rdf:Description rdf:about="#entity_4">
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
</rdf:Description>
</ro:part_of>
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</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of proximal tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol6A_weinstein_1995.sedml#Concentrations.pH_int">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_2">
<semsim:physicalPropertyOf>
<rdf:Description rdf:about="#entity_5">
<ro:part_of rdf:resource="#entity_3" />
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</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Internal pH concentration in the portion of cytosol in epithelial cell of proximal tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol6A_weinstein_1995.sedml#NHE3.J_NHE3_Na">
<semsim:isComputationalComponentFor>
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<semsim:physicalPropertyOf>
<rdf:Description rdf:about="#process_0">
<semsim:hasMediatorParticipant>
<rdf:Description rdf:about="#mediator_0">
<semsim:hasPhysicalEntityReference>
<rdf:Description rdf:about="#entity_6">
<ro:part_of>
<rdf:Description rdf:about="#entity_7">
<ro:part_of rdf:resource="#entity_4" />
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasMediatorParticipant>
<semsim:hasSinkParticipant>
<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
<semsim:hasPhysicalEntityReference rdf:resource="#entity_2" />
</rdf:Description>
</semsim:hasSinkParticipant>
<semsim:hasSourceParticipant>
<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
<semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
</rdf:Description>
</semsim:hasSourceParticipant>
<semsim:name>Na+ flow through sodium/hydrogen exchanger 3</semsim:name>
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Flux of sodium from portion of renal filtrate in proximal convoluted tubule to portion of cytosol in epithelial cell of proximal tubule through sodium/hydrogen exchanger 3</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol6A_weinstein_1995.sedml#weinstein_1995_7A">
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_280787" />
<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17693" />
<bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />
</rdf:Description>
</rdf:RDF>
