Location: semantic-annotation @ 2e124c3a0cfe / SEDML / protocol1F_chang_fujita_b_1999.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-01-31 18:26:22+13:00
Desc:
testing a SEDML-based weinstein model
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/2e124c3a0cfe559786f29f28e8d78b9da4f798df/SEDML/protocol1F_chang_fujita_b_1999.rdf

  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">
		   
	<rdf:Description rdf:about="./protocol1F_chang_fujita_b_1999">
		<ro:Protocol>
			<rdf:Description rdf:about="#mc_sodium_flux.C_m_Na">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_4">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_0">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_1">
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="https://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Concentration of sodium in the portion of renal filtrate in distal convoluted tubule compartment</dcterms:description>
			</rdf:Description>
		</ro:Protocol>
		<ro:Protocol>
			<rdf:Description rdf:about="#mc_sodium_flux.J_mc_Na">
			  <semsim:isComputationalComponentFor>
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				  <semsim:physicalPropertyOf>
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					  <semsim:hasMediatorParticipant>
						<rdf:Description rdf:about="#mediator_0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_5">
							  <ro:part_of>
								<rdf:Description rdf:about="#entity_6">
								  <ro:part_of>
									<rdf:Description rdf:about="#entity_4">
									  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70981" />
									</rdf:Description>
								  </ro:part_of>
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							</rdf:Description>
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					  </semsim:hasMediatorParticipant>
					  <semsim:hasSinkParticipant>
						<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_2">
							  <ro:part_of>
								<rdf:Description rdf:about="#entity_3">
								  <ro:part_of rdf:resource="#entity_4" />
								  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
								</rdf:Description>
							  </ro:part_of>
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
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						  </semsim:hasPhysicalEntityReference>
						</rdf:Description>
					  </semsim:hasSinkParticipant>
					  <semsim:hasSourceParticipant>
						<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
						</rdf:Description>
					  </semsim:hasSourceParticipant>
					  <semsim:name>Na+ flow across Na-Cl cotransporter</semsim:name>
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="https://identifiers.org/opb/OPB_00593" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Flux of Na+ from portion of renal filtrate in distal convoluted tubule compartment to portion of cytosol in epithelial cell of distal tubule compartment across Na-Cl cotransporter</dcterms:description>
			</rdf:Description>
		</ro:Protocol>
		<ro:Protocol>
			<rdf:Description rdf:about="#mc_sodium_flux.C_c_Na">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_5">
				  <semsim:physicalPropertyOf rdf:resource="#entity_2" />
				  <semsim:hasPhysicalDefinition rdf:resource="https://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of distal tubule compartment</dcterms:description>
			</rdf:Description>
		</ro:Protocol>
		<ro:Protocol>
			<rdf:Description rdf:about="#chang_fujita_b_1999_1F">
				<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000066" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
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				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17721" />
			</rdf:Description>
		</ro:Protocol>
	</rdf:Description>
  </rdf:RDF>