Location: semantic-annotation @ 365b24f7c4bd / protocolSEDML.xml

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-02-01 18:26:13+13:00
Desc:
adding some SEDML-based protocols for the model verification platform
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/365b24f7c4bd35542064805f8f97c885bce4f490/protocolSEDML.xml
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<?xml version='1.0' encoding='UTF-8'?>
    <listOfProtocols>
        <Protocol id="1A" 
                  nameX="Time" 
				  nameY="Extracellular sodium concentration" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_280787" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparql="protocol1A"/>
		<Protocol id="1B" 
                  nameX="Time" 
				  nameY="Extracellular chloride concentration" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparql="protocol1B"/>
		<Protocol id="1C" 
                  nameX="Time" 
				  nameY="Extracellular bicarbonate concentration" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparql="protocol1C"/>
		<Protocol id="1D" 
                  nameX="Time" 
				  nameY="Bicarbonate flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparql="protocol1D"/>
		<Protocol id="1E" 
                  nameX="Time" 
				  nameY="Chloride flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparql="protocol1E"/>
		<Protocol id="1F" 
                  nameX="Time" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol1F"/>
		<Protocol id="1G" 
                  nameX="Time" 
				  nameY="Bicarbonate influx" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol1G"/>
		<Protocol id="1H" 
                  nameX="Time" 
				  nameY="Chloride influx" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol1H"/>
        <Protocol id="2A" 
                  nameX="External pH" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_82715" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol2A"/>
		<Protocol id="2B" 
                  nameX="Extracellular hydrogen concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_15378" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol2B"/>
        <Protocol id="3" 
                  nameX="Extracellular sodium concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol3"/>
        <Protocol id="4" 
                  nameX="Extracellular ammonium concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_28938" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol4"/>
        <Protocol id="5" 
                  nameX="Internal pH" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol5"/>
        <Protocol id="6A" 
                  nameX="Internal pH" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol6A"/>
        <Protocol id="6B" 
                  nameX="Internal pH" 
				  nameY="Hydrogen flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_15378" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol6B"/>
		<Protocol id="6C" 
                  nameX="Internal pH" 
				  nameY="Ammonium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_28938" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol6C"/>
		<Protocol id="10" 
                  nameX="Chloride concentration" 
				  nameY="Sodium influx" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparql="protocol10"/>
    </listOfProtocols>