Location: semantic-annotation @ 7d009dbd6a09 / SEDML / protocol1E_weinstein_2000.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-02-08 00:50:50+13:00
Desc:
replaced J_NHE3_NH4 with J_NHE3_Na of the protocol4B
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/7d009dbd6a09f900520d31c3fe2c1d167b36e9aa/SEDML/protocol1E_weinstein_2000.rdf

  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">
	
			<rdf:Description rdf:about="protocol1E_weinstein_2000.sedml#AE1.Cl_e">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_3">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_3">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_4">
						  <ro:part_of>
							<rdf:Description rdf:about="#entity_2">
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70982" />
							</rdf:Description>
						  </ro:part_of>
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17996" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>concentration of chloride in the portion of tissue fluid in epithelial cell of collecting duct of renal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1E_weinstein_2000.sedml#AE1.Cl_i">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_2">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_0">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_1">
						  <ro:part_of rdf:resource="#entity_2" />
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17996" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>concentration of chloride in the portion of cytosol in epithelial cell of collecting duct of renal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1E_weinstein_2000.sedml#AE1.J_Cl">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_4">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#process_0" dcterms:description="">
					  <semsim:hasMediatorParticipant>
						<rdf:Description rdf:about="#mediator_0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_5">
							  <ro:part_of rdf:resource="#entity_2" />
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
							</rdf:Description>
						  </semsim:hasPhysicalEntityReference>
						</rdf:Description>
					  </semsim:hasMediatorParticipant>
					  <semsim:hasSinkParticipant>
						<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_3" />
						</rdf:Description>
					  </semsim:hasSinkParticipant>
					  <semsim:hasSourceParticipant>
						<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
						</rdf:Description>
					  </semsim:hasSourceParticipant>
					  <semsim:name>Cl- flow from across basolateral plasma membrane</semsim:name>
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>net flux (efflux) of chloride from portion of cytosol in epithelial cell of collecting duct of renal tubule to portion of tissue fluid in epithelial cell of collecting duct of renal tubule compartment across basolateral plasma membrane</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1E_weinstein_2000.sedml#environment.time">
				<bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023" />
			</rdf:Description>
			<rdf:Description rdf:about="protocol1E_weinstein_2000.sedml#weinstein_2000_1E">
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
				<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P23562" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
				<bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />    
			</rdf:Description>
  </rdf:RDF>