Location: semantic-annotation @ 92367a08b2bb / SEDML / 1J_chang_fujita_b_1999.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-06-25 21:17:52+12:00
Desc:
annotations changed for mackenzie model
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/92367a08b2bb9612257ef3f32b6823adf5e0d53b/SEDML/1J_chang_fujita_b_1999.rdf

<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
         xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
         xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
         xmlns:semsim="http://www.bhi.washington.edu/SemSim#"
         xmlns:dcterms="http://purl.org/dc/terms/">

    <rdf:Description rdf:about="protocol1J_chang_fujita_b_1999.sedml#mc_sodium_flux.C_m_Na">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_4">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#entity_0">
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                                <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_280791"/>
                            </rdf:Description>
                        </ro:part_of>
                        <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101"/>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Concentration of sodium in the portion of renal filtrate in distal convoluted tubule
            compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1J_chang_fujita_b_1999.sedml#mc_sodium_flux.J_mc_Na">
        <semsim:isComputationalComponentFor>
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                <semsim:physicalPropertyOf>
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                                <semsim:hasPhysicalEntityReference>
                                    <rdf:Description rdf:about="#entity_5">
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                                            <rdf:Description rdf:about="#entity_6">
                                                <ro:part_of>
                                                    <rdf:Description rdf:about="#entity_4">
                                                        <semsim:hasPhysicalDefinition
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                                                    </rdf:Description>
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                                                <semsim:hasPhysicalDefinition
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                                        <semsim:hasPhysicalDefinition
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                        </semsim:hasMediatorParticipant>
                        <semsim:hasSinkParticipant>
                            <rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
                                <semsim:hasPhysicalEntityReference>
                                    <rdf:Description rdf:about="#entity_2">
                                        <ro:part_of>
                                            <rdf:Description rdf:about="#entity_3">
                                                <ro:part_of rdf:resource="#entity_4"/>
                                                <semsim:hasPhysicalDefinition
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                                            </rdf:Description>
                                        </ro:part_of>
                                        <semsim:hasPhysicalDefinition
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                                </semsim:hasPhysicalEntityReference>
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                        </semsim:hasSinkParticipant>
                        <semsim:hasSourceParticipant>
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                                <semsim:hasPhysicalEntityReference rdf:resource="#entity_0"/>
                            </rdf:Description>
                        </semsim:hasSourceParticipant>
                        <semsim:name>Na+ flow across Na-Cl cotransporter</semsim:name>
                    </rdf:Description>
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                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Flux of sodium from portion of renal filtrate in distal convoluted tubule compartment to
            portion of cytosol in epithelial cell of distal tubule compartment across Na-Cl cotransporter
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1J_chang_fujita_b_1999.sedml#mc_sodium_flux.C_c_Na">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_5">
                <semsim:physicalPropertyOf rdf:resource="#entity_2"/>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of distal tubule
            compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1J_chang_fujita_b_1999.sedml#environment.time">
        <bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023"/>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1J_chang_fujita_b_1999.sedml#chang_fujita_b_1999_1J">
        <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000066"/>
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        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669"/>
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        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550"/>
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        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17721"/>
    </rdf:Description>
</rdf:RDF>