Location: semantic-annotation @ 92367a08b2bb / SEDML / 5A_weinstein_1995.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-06-25 21:17:52+12:00
Desc:
annotations changed for mackenzie model
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/92367a08b2bb9612257ef3f32b6823adf5e0d53b/SEDML/5A_weinstein_1995.rdf

<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
         xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
         xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
         xmlns:semsim="http://www.bhi.washington.edu/SemSim#"
         xmlns:dcterms="http://purl.org/dc/terms/">

    <rdf:Description rdf:about="protocol5A_weinstein_1995.sedml#NHE3.C_ext_Na">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_3">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#entity_0">
                        <ro:part_of>
                            <rdf:Description rdf:about="#entity_1">
                                <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_280787"/>
                            </rdf:Description>
                        </ro:part_of>
                        <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101"/>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Concentration of sodium in the portion of renal filtrate in proximal convoluted tubule
            compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol5A_weinstein_1995.sedml#NHE3.C_int_Na">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_4">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#entity_2">
                        <ro:part_of>
                            <rdf:Description rdf:about="#entity_3">
                                <ro:part_of>
                                    <rdf:Description rdf:about="#entity_4">
                                        <semsim:hasPhysicalDefinition
                                                rdf:resource="http://purl.obolibrary.org/obo/FMA_70973"/>
                                    </rdf:Description>
                                </ro:part_of>
                                <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
                            </rdf:Description>
                        </ro:part_of>
                        <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101"/>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of proximal tubule
            compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol5A_weinstein_1995.sedml#Concentrations.pH_int">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_2">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#entity_5">
                        <ro:part_of rdf:resource="#entity_3"/>
                        <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_9641"/>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Internal pH concentration in the portion of cytosol in epithelial cell of proximal tubule
            compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol5A_weinstein_1995.sedml#NHE3.J_NHE3_Na">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_5">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#process_0">
                        <semsim:hasMediatorParticipant>
                            <rdf:Description rdf:about="#mediator_0">
                                <semsim:hasPhysicalEntityReference>
                                    <rdf:Description rdf:about="#entity_6">
                                        <ro:part_of>
                                            <rdf:Description rdf:about="#entity_7">
                                                <ro:part_of rdf:resource="#entity_4"/>
                                                <semsim:hasPhysicalDefinition
                                                        rdf:resource="http://purl.obolibrary.org/obo/FMA_84666"/>
                                            </rdf:Description>
                                        </ro:part_of>
                                        <semsim:hasPhysicalDefinition
                                                rdf:resource="http://purl.obolibrary.org/obo/PR_P26433"/>
                                    </rdf:Description>
                                </semsim:hasPhysicalEntityReference>
                            </rdf:Description>
                        </semsim:hasMediatorParticipant>
                        <semsim:hasSinkParticipant>
                            <rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
                                <semsim:hasPhysicalEntityReference rdf:resource="#entity_2"/>
                            </rdf:Description>
                        </semsim:hasSinkParticipant>
                        <semsim:hasSourceParticipant>
                            <rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
                                <semsim:hasPhysicalEntityReference rdf:resource="#entity_0"/>
                            </rdf:Description>
                        </semsim:hasSourceParticipant>
                        <semsim:name>Na+ flow through sodium/hydrogen exchanger 3</semsim:name>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>Flux of sodium from portion of renal filtrate in proximal convoluted tubule to portion of
            cytosol in epithelial cell of proximal tubule through sodium/hydrogen exchanger 3
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol5A_weinstein_1995.sedml#weinstein_1995_5A">
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84666"/>
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_70973"/>
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_280787"/>
        <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P26433"/>
        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550"/>
        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666"/>
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17693"/>
        <bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023"/>
    </rdf:Description>
</rdf:RDF>