Location: semantic-annotation @ 92367a08b2bb / SEDML / backup / protocol3_weinstein_1995.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-06-25 21:17:52+12:00
Desc:
annotations changed for mackenzie model
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/92367a08b2bb9612257ef3f32b6823adf5e0d53b/SEDML/backup/protocol3_weinstein_1995.rdf
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  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">
		   
	<rdf:Description rdf:about="./protocol3_weinstein_1995.sedml">
	  <ro:Protocol>	   		   		   		   		   
		<rdf:Description rdf:about="#NHE3.C_ext_Na">
		  <semsim:isComputationalComponentFor>
			<rdf:Description rdf:about="#property_2">
			  <semsim:physicalPropertyOf>
				<rdf:Description rdf:about="#entity_0">
				  <ro:part_of>
					<rdf:Description rdf:about="#entity_1">
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
					</rdf:Description>
				  </ro:part_of>
				  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
				</rdf:Description>
			  </semsim:physicalPropertyOf>
			  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
			</rdf:Description>
		  </semsim:isComputationalComponentFor>
		  <dcterms:description>Concentration of Na+ in the portion of renal filtrate in proximal convoluted tubule compartment</dcterms:description>
		</rdf:Description>
	  </ro:Protocol>	   		   		   		   		   
	  <ro:Protocol>	   		   		   		   		   
		<rdf:Description rdf:about="#NHE3.C_int_Na">
		  <semsim:isComputationalComponentFor>
			<rdf:Description rdf:about="#property_3">
			  <semsim:physicalPropertyOf>
				<rdf:Description rdf:about="#entity_2">
				  <ro:part_of>
					<rdf:Description rdf:about="#entity_3">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_4">
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
					</rdf:Description>
				  </ro:part_of>
				  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
				</rdf:Description>
			  </semsim:physicalPropertyOf>
			  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
			</rdf:Description>
		  </semsim:isComputationalComponentFor>
		  <dcterms:description>Concentration of Na+ in the portion of cytosol in epithelial cell of proximal tubule compartment</dcterms:description>
		</rdf:Description>
	  </ro:Protocol>	   		   		   		   		   
	  <ro:Protocol>	   		   		   		   		   
		<rdf:Description rdf:about="#NHE3.J_NHE3_Na">
		  <semsim:isComputationalComponentFor>
			<rdf:Description rdf:about="#property_4">
			  <semsim:physicalPropertyOf>
				<rdf:Description rdf:about="#process_0" dcterms:description="">
				  <semsim:hasMediatorParticipant>
					<rdf:Description rdf:about="#mediator_0">
					  <semsim:hasPhysicalEntityReference>
						<rdf:Description rdf:about="#entity_5">
						  <ro:part_of>
							<rdf:Description rdf:about="#entity_6">
							  <ro:part_of rdf:resource="#entity_4" />
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
							</rdf:Description>
						  </ro:part_of>
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
						</rdf:Description>
					  </semsim:hasPhysicalEntityReference>
					</rdf:Description>
				  </semsim:hasMediatorParticipant>
				  <semsim:hasSinkParticipant>
					<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
					  <semsim:hasPhysicalEntityReference rdf:resource="#entity_2" />
					</rdf:Description>
				  </semsim:hasSinkParticipant>
				  <semsim:hasSourceParticipant>
					<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
					  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
					</rdf:Description>
				  </semsim:hasSourceParticipant>
				  <semsim:name>Na+ flow through sodium/hydrogen exchanger 3</semsim:name>
				</rdf:Description>
			  </semsim:physicalPropertyOf>
			  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
			</rdf:Description>
		  </semsim:isComputationalComponentFor>
		  <dcterms:description>Flux of Na+ from portion of renal filtrate in proximal convoluted tubule to portion of cytosol in epithelial cell of proximal tubule through sodium/hydrogen exchanger 3</dcterms:description>
		</rdf:Description>
	  </ro:Protocol>	   		   		   		   		   
	  <ro:Protocol>	   		   		   		   		   
		<rdf:Description rdf:about="#weinstein_1995">
		  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
		  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
		  <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
		  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
		  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
		  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
		  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17693" />
		  <bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />
		</rdf:Description>
	  </ro:Protocol>
	</rdf:Description>	  
  </rdf:RDF>