Location: semantic-annotation @ 92367a08b2bb / protocolSEDML.xml

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-06-25 21:17:52+12:00
Desc:
annotations changed for mackenzie model
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/92367a08b2bb9612257ef3f32b6823adf5e0d53b/protocolSEDML.xml
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<?xml version='1.0' encoding='UTF-8'?>
    <listOfProtocols>
        <Protocol id="protocol1A" 
                  nameX="Time" 
				  nameY="Extracellular sodium concentration" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_280787" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1AX" 
				  sparqlY="protocol1AY"/>
		<Protocol id="protocol1B" 
                  nameX="Time" 
				  nameY="Portion of tissue fluid chloride concentration" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1BX" 
				  sparqlY="protocol1BY"/>
		<Protocol id="protocol1C" 
                  nameX="Time" 
				  nameY="Portion of tissue fluid bicarbonate concentration" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1CX" 
				  sparqlY="protocol1CY"/>
		<Protocol id="protocol1D" 
                  nameX="Time" 
				  nameY="Bicarbonate flux" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparqlX="protocol1DX" 
				  sparqlY="protocol1DY"/>
		<Protocol id="protocol1E" 
                  nameX="Time" 
				  nameY="Chloride flux" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparqlX="protocol1EX" 
				  sparqlY="protocol1EY"/>
		<Protocol id="protocol1F" 
                  nameX="Time" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1FX" 
				  sparqlY="protocol1FY"/>
		<Protocol id="protocol1G" 
                  nameX="Time" 
				  nameY="Bicarbonate influx" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1GX" 
				  sparqlY="protocol1GY"/>
		<Protocol id="protocol1H" 
                  nameX="Time" 
				  nameY="Chloride influx" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1HX" 
				  sparqlY="protocol1HY"/>
        <Protocol id="protocol1I" 
                  nameX="Time" 
				  nameY="Extracellular sodium concentration" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_280791" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1IX" 
				  sparqlY="protocol1IY"/>
		<Protocol id="protocol1J" 
                  nameX="Time" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280791"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1JX" 
				  sparqlY="protocol1JY"/>
		<Protocol id="protocol2A" 
                  nameX="External pH concentration" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_82715" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol2AX" 
				  sparqlY="protocol2AY"/>
		<Protocol id="protocol2B" 
                  nameX="Extracellular hydrogen concentration" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_15378" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol2BX" 
				  sparqlY="protocol2BY"/>
        <Protocol id="protocol3" 
                  nameX="Extracellular sodium concentration" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol3X" 
				  sparqlY="protocol3Y"/>
        <Protocol id="protocol4" 
                  nameX="Extracellular ammonium concentration" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_28938" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol4X" 
				  sparqlY="protocol4Y"/>
        <Protocol id="protocol5" 
                  nameX="Internal pH concentration" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol5X" 
				  sparqlY="protocol5Y"/>
        <Protocol id="protocol6A" 
                  nameX="Internal pH concentration" 
				  nameY="Sodium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol6AX" 
				  sparqlY="protocol6AY"/>
        <Protocol id="protocol6B" 
                  nameX="Internal pH concentration" 
				  nameY="Hydrogen flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_15378" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol6BX" 
				  sparqlY="protocol6BY"/>
		<Protocol id="protocol6C" 
                  nameX="Internal pH concentration" 
				  nameY="Ammonium flux" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_28938" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol6CX" 
				  sparqlY="protocol6CY"/>
		<Protocol id="protocol10" 
                  nameX="Chloride concentration" 
				  nameY="Sodium influx" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol10X" 
				  sparqlY="protocol10Y"/>
		<Protocol id="protocol11" 
                  nameX="Time" 
				  nameY="Transmembrane potential" 
				  opbX="http://identifiers.org/opb/OPB_00340" 
				  opbY="http://identifiers.org/opb/OPB_00506" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo" 
				  fmaX="http://purl.obolibrary.org/obo"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo" 
				  fmaYsrc="http://purl.obolibrary.org/obo"
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol11X" 
				  sparqlY="protocol11Y"/>
		<Protocol id="protocol12" 
                  nameX="Transmembrane potential" 
				  nameY="Sodium current" 
				  opbX="http://identifiers.org/opb/OPB_00506" 
				  opbY="http://identifiers.org/opb/OPB_00318" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo" 
				  fmaX="http://purl.obolibrary.org/obo"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_74550"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol12X" 
				  sparqlY="protocol12Y"/>
		<Protocol id="protocol13" 
                  nameX="Transmembrane potential" 
				  nameY="Calcium current" 
				  opbX="http://identifiers.org/opb/OPB_00506" 
				  opbY="http://identifiers.org/opb/OPB_00318" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo" 
				  fmaX="http://purl.obolibrary.org/obo"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol13X" 
				  sparqlY="protocol13Y"/>
		<Protocol id="protocol14" 
                  nameX="Transmembrane potential" 
				  nameY="Steady potassium current" 
				  opbX="http://identifiers.org/opb/OPB_00506" 
				  opbY="http://identifiers.org/opb/OPB_00318" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo" 
				  fmaX="http://purl.obolibrary.org/obo"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_67394" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_74550"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparqlX="protocol14X" 
				  sparqlY="protocol14Y"/>
    </listOfProtocols>