Location: semantic-annotation @ 9286a595a0eb / SEDML / protocol6C_weinstein_1995.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-03-03 16:04:04+13:00
Desc:
moving protocol 13's files into the SEDML directory
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/9286a595a0eb88319f656462c58b038ab4ed3eab/SEDML/protocol6C_weinstein_1995.rdf

  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">

			<rdf:Description rdf:about="protocol6C_weinstein_1995.sedml#NHE3.C_ext_NH4">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_3">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_0">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_1">
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_280787" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_28938" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Concentration of ammonium in the portion of renal filtrate in proximal convoluted tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol6C_weinstein_1995.sedml#NHE3.C_int_NH4">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_4">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_2">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_3">
						  <ro:part_of>
							<rdf:Description rdf:about="#entity_4">
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
							</rdf:Description>
						  </ro:part_of>
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_28938" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Concentration of ammonium in the portion of cytosol in epithelial cell of proximal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol6C_weinstein_1995.sedml#Concentrations.pH_int">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_2">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_5">
					  <ro:part_of rdf:resource="#entity_3" />
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_9641" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Internal pH concentration in the portion of cytosol in epithelial cell of proximal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol6C_weinstein_1995.sedml#NHE3.J_NHE3_NH4">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_5">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#process_0">
					  <semsim:hasMediatorParticipant>
						<rdf:Description rdf:about="#mediator_0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_6">
							  <ro:part_of>
								<rdf:Description rdf:about="#entity_7">
								  <ro:part_of rdf:resource="#entity_4" />
								  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
								</rdf:Description>
							  </ro:part_of>
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
							</rdf:Description>
						  </semsim:hasPhysicalEntityReference>
						</rdf:Description>
					  </semsim:hasMediatorParticipant>
					  <semsim:hasSinkParticipant>
						<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_2" />
						</rdf:Description>
					  </semsim:hasSinkParticipant>
					  <semsim:hasSourceParticipant>
						<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
						</rdf:Description>
					  </semsim:hasSourceParticipant>
					  <semsim:name>Na+ flow through sodium/hydrogen exchanger 3</semsim:name>
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Flux of ammonium from portion of renal filtrate in proximal convoluted tubule to portion of cytosol in epithelial cell of proximal tubule through sodium/hydrogen exchanger 3</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol6C_weinstein_1995.sedml#weinstein_1995_7C">
			  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
			  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
			  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_280787" />
			  <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
			  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
			  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
			  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
			  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17693" />
			  <bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />
			</rdf:Description>		
  </rdf:RDF>