Location: semantic-annotation @ ab4b213592f0 / SEDML / protocol1F_chang_fujita_b_1999.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-03-03 10:38:08+13:00
Desc:
adding protocol 11 in the protocolSEDML.xml
Permanent Source URI:
https://staging.physiomeproject.org/workspace/267/rawfile/ab4b213592f0e991f3806ae35d0bbda644652a58/SEDML/protocol1F_chang_fujita_b_1999.rdf

  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">
		   
			<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#mc_sodium_flux.C_m_Na">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_4">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#entity_0">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_1">
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_280791" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Concentration of sodium in the portion of renal filtrate in distal convoluted tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#mc_sodium_flux.J_mc_Na">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_3">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#process_0" dcterms:description="">
					  <semsim:hasMediatorParticipant>
						<rdf:Description rdf:about="#mediator_0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_5">
							  <ro:part_of>
								<rdf:Description rdf:about="#entity_6">
								  <ro:part_of>
									<rdf:Description rdf:about="#entity_4">
									  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70981" />
									</rdf:Description>
								  </ro:part_of>
								  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
								</rdf:Description>
							  </ro:part_of>
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P55018" />
							</rdf:Description>
						  </semsim:hasPhysicalEntityReference>
						</rdf:Description>
					  </semsim:hasMediatorParticipant>
					  <semsim:hasSinkParticipant>
						<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_2">
							  <ro:part_of>
								<rdf:Description rdf:about="#entity_3">
								  <ro:part_of rdf:resource="#entity_4" />
								  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
								</rdf:Description>
							  </ro:part_of>
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
							</rdf:Description>
						  </semsim:hasPhysicalEntityReference>
						</rdf:Description>
					  </semsim:hasSinkParticipant>
					  <semsim:hasSourceParticipant>
						<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
						</rdf:Description>
					  </semsim:hasSourceParticipant>
					  <semsim:name>Na+ flow across Na-Cl cotransporter</semsim:name>
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Flux of sodium from portion of renal filtrate in distal convoluted tubule compartment to portion of cytosol in epithelial cell of distal tubule compartment across Na-Cl cotransporter</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#mc_sodium_flux.C_c_Na">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_5">
				  <semsim:physicalPropertyOf rdf:resource="#entity_2" />
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of distal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#environment.time">
				<bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023" />
			</rdf:Description>
			<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#chang_fujita_b_1999_1F">
				<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000066" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17721" />
			</rdf:Description>
  </rdf:RDF>