- Author:
- ssu655 <ssu655@aucklanduni.ac.nz>
- Date:
- 2020-03-12 17:56:24+13:00
- Desc:
- Added Parameter86v3.cellml which contains different proximal and distal radii for all vessels, taken from Hemolab. It also combined the vessel components that were previously split to modules ABCD
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/4ac/rawfile/ccb8b4951703b4d9fbac21a3cdcf5cd0877a9204/BG_ADV.cellml
<?xml version='1.0' encoding='UTF-8'?>
<model name="BG_ADV" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Units.cellml">
<units name="m3" units_ref="m3"/>
<units name="m3_per_s" units_ref="m3_per_s"/>
<units name="m3_per_s2" units_ref="m3_per_s2"/>
<units name="m6_per_J" units_ref="m6_per_J"/>
<units name="per_m" units_ref="per_m"/>
<units name="J_per_m3" units_ref="J_per_m3"/>
<units name="Js_per_m6" units_ref="Js_per_m6"/>
<units name="Js2_per_m6" units_ref="Js2_per_m6"/>
<units name="Js2_per_m5" units_ref="Js2_per_m5"/>
<units name="J_per_s" units_ref="J_per_s"/>
<units name="J_per_m6" units_ref="J_per_m6"/>
<units name="Js_per_m3" units_ref="Js_per_m3"/>
<units name="UnitValve" units_ref="UnitValve"/>
</import>
<import xlink:href="Parameters86.cellml">
<component component_ref="Parameters_Test" name="Parameters_Test"/>
</import>
<import xlink:href="BG_Modules.cellml">
<component component_ref="pv_jII_type" name="parent_vessel_module"/>
</import>
<import xlink:href="BG_Modules.cellml">
<component component_ref="pv_type" name="first_vessel_module"/>
</import>
<import xlink:href="BG_Modules.cellml">
<component component_ref="pv_type" name="second_vessel_module"/>
</import>
<component name="environment">
<variable name="time" public_interface="out" units="second"/>
</component>
<component name="main">
<variable name="t" private_interface="out" public_interface="in" units="second"/>
<variable name="u_in" private_interface="out" units="J_per_m3"/>
<variable name="v_in" private_interface="in" units="m3_per_s"/>
<variable initial_value="1.0e-6" name="v_out_1" private_interface="out" units="m3_per_s"/>
<variable initial_value="0.5e-6" name="v_out_2" private_interface="out" units="m3_per_s"/>
<variable name="conc" private_interface="in" units="dimensionless"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>u_in</ci>
<apply>
<plus/>
<cn cellml:units="dimensionless">1</cn>
<apply>
<times/>
<cn cellml:units="dimensionless">1</cn>
<apply>
<sin/>
<apply>
<times/>
<cn cellml:units="dimensionless">5</cn>
<ci>t</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="main" component_2="environment"/>
<map_variables variable_1="t" variable_2="time"/>
</connection>
<connection>
<map_components component_1="main" component_2="parent_vessel_module"/>
<map_variables variable_1="t" variable_2="t"/>
<map_variables variable_1="v_in" variable_2="v"/>
<map_variables variable_1="u_in" variable_2="u_in"/>
<map_variables variable_1="conc" variable_2="c_in"/>
</connection>
<connection>
<map_components component_1="main" component_2="first_vessel_module"/>
<map_variables variable_1="t" variable_2="t"/>
<map_variables variable_1="v_out_1" variable_2="v_out"/>
</connection>
<connection>
<map_components component_1="main" component_2="second_vessel_module"/>
<map_variables variable_1="t" variable_2="t"/>
<map_variables variable_1="v_out_2" variable_2="v_out"/>
</connection>
<connection>
<map_components component_1="parent_vessel_module" component_2="first_vessel_module"/>
<map_variables variable_1="v_out_1" variable_2="v"/>
<map_variables variable_1="u" variable_2="u_in"/>
<map_variables variable_1="c_out" variable_2="c_in"/>
</connection>
<connection>
<map_components component_1="parent_vessel_module" component_2="second_vessel_module"/>
<map_variables variable_1="v_out_2" variable_2="v"/>
<map_variables variable_1="u" variable_2="u_in"/>
<!-- vars c_out and c_in;-->
</connection>
<component name="parent_vessel">
<variable name="u" public_interface="in" units="J_per_m3"/>
<variable name="v" public_interface="in" units="m3_per_s"/>
<variable name="E" public_interface="in" units="J_per_m3"/>
<variable name="r" public_interface="in" units="metre"/>
<variable name="h" public_interface="in" units="metre"/>
<variable name="l" public_interface="in" units="metre"/>
</component>
<component name="first_vessel">
<variable name="u" public_interface="in" units="J_per_m3"/>
<variable name="v" public_interface="in" units="m3_per_s"/>
<variable name="E" public_interface="in" units="J_per_m3"/>
<variable name="r" public_interface="in" units="metre"/>
<variable name="h" public_interface="in" units="metre"/>
<variable name="l" public_interface="in" units="metre"/>
</component>
<component name="second_vessel">
<variable name="u" public_interface="in" units="J_per_m3"/>
<variable name="v" public_interface="in" units="m3_per_s"/>
<variable name="E" public_interface="in" units="J_per_m3"/>
<variable name="r" public_interface="in" units="metre"/>
<variable name="h" public_interface="in" units="metre"/>
<variable name="l" public_interface="in" units="metre"/>
</component>
<connection>
<map_components component_1="parent_vessel" component_2="parent_vessel_module"/>
<map_variables variable_1="u" variable_2="u"/>
<map_variables variable_1="v" variable_2="v"/>
<map_variables variable_1="E" variable_2="E_m"/>
<map_variables variable_1="r" variable_2="radius"/>
<map_variables variable_1="h" variable_2="thickness"/>
<map_variables variable_1="l" variable_2="length"/>
</connection>
<connection>
<map_components component_1="first_vessel" component_2="first_vessel_module"/>
<map_variables variable_1="u" variable_2="u"/>
<map_variables variable_1="v" variable_2="v"/>
<map_variables variable_1="E" variable_2="E_m"/>
<map_variables variable_1="r" variable_2="radius"/>
<map_variables variable_1="h" variable_2="thickness"/>
<map_variables variable_1="l" variable_2="length"/>
</connection>
<connection>
<map_components component_1="second_vessel" component_2="second_vessel_module"/>
<map_variables variable_1="u" variable_2="u"/>
<map_variables variable_1="v" variable_2="v"/>
<map_variables variable_1="E" variable_2="E_m"/>
<map_variables variable_1="r" variable_2="radius"/>
<map_variables variable_1="h" variable_2="thickness"/>
<map_variables variable_1="l" variable_2="length"/>
</connection>
<connection>
<map_components component_1="Parameters_Test" component_2="parent_vessel_module"/>
<map_variables variable_1="l_parent_vessel" variable_2="l"/>
<map_variables variable_1="E_parent_vessel" variable_2="E"/>
<map_variables variable_1="r_parent_vessel" variable_2="r"/>
</connection>
<connection>
<map_components component_1="Parameters_Test" component_2="first_vessel_module"/>
<map_variables variable_1="l_first_vessel" variable_2="l"/>
<map_variables variable_1="E_first_vessel" variable_2="E"/>
<map_variables variable_1="r_first_vessel" variable_2="r"/>
</connection>
<connection>
<map_components component_1="Parameters_Test" component_2="second_vessel_module"/>
<map_variables variable_1="l_second_vessel" variable_2="l"/>
<map_variables variable_1="E_second_vessel" variable_2="E"/>
<map_variables variable_1="r_second_vessel" variable_2="r"/>
</connection>
<group>
<relationship_ref relationship="encapsulation"/>
<component_ref component="main">
<component_ref component="Parameters_Test"/>
<component_ref component="first_vessel_module"/>
<component_ref component="second_vessel_module"/>
<component_ref component="parent_vessel_module"/>
<component_ref component="first_vessel"/>
<component_ref component="second_vessel"/>
<component_ref component="parent_vessel"/>
</component_ref>
</group>
</model>
