- Author:
- Soroush Safaei <ssaf006@aucklanduni.ac.nz>
- Date:
- 2018-03-12 20:05:34+13:00
- Desc:
- convert to bg
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/4bd/rawfile/778f87972db2ce4cd94b41a154e877ade7bdb3dc/coupling/Neuron.cellml
<?xml version='1.0'?>
<model name="Neuron_module" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Units.cellml">
<units name="mM" units_ref="mM"/>
<units name="per_s" units_ref="per_s"/>
<units name="mM_per_s" units_ref="mM_per_s"/>
<units name="per_mM" units_ref="per_mM"/>
<units name="per_mM_s" units_ref="per_mM_s"/>
</import>
<component name="environment">
<variable name="time" public_interface="out" units="second"/>
</component>
<component name="Neuron">
<variable name="t" public_interface="in" units="second"/>
<variable name="q_Glu" public_interface="in" units="mM"/>
<variable initial_value="2885.394" name="q_Ca_Neuro" public_interface="out" units="mM"/>
<variable initial_value="127.6935" name="q_NO" public_interface="out" units="mM"/>
<variable initial_value="15.2797" name="q_cGMP" public_interface="out" units="mM"/>
<variable initial_value="2.1419" name="q_S1_cGMP" public_interface="out" units="mM"/>
<variable initial_value="0.4667" name="q_S2_cGMP" public_interface="out" units="mM"/>
<variable initial_value="1.3953" name="q_S3_cGMP" public_interface="out" units="mM"/>
<variable initial_value="9279.94197" name="v_Ca_Nbas" public_interface="out" units="mM_per_s"/>
<variable initial_value="7.39467132" name="k_3" public_interface="out" units="per_s"/>
<variable initial_value="0.17179358" name="k_10" public_interface="out" units="per_s"/>
<variable initial_value="5.88395274" name="k_11" public_interface="out" units="per_s"/>
<variable initial_value="350.783338" name="k_21" public_interface="out" units="per_s"/>
<variable initial_value="1609.96028" name="k_22" public_interface="out" units="per_s"/>
<variable initial_value="538.467776" name="k_23" public_interface="out" units="per_s"/>
<variable initial_value="3.88188977" name="k_NO_sink" public_interface="out" units="per_s"/>
<variable initial_value="3.21617846" name="k_sink_N" public_interface="out" units="per_s"/>
<variable initial_value="49.1725342" name="k_sink_C" public_interface="out" units="per_s"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_Ca_Neuro</ci>
</apply>
<apply>
<plus/>
<apply>
<minus/>
<apply>
<times/>
<ci>k_3</ci>
<ci>q_Glu</ci>
</apply>
<apply>
<times/>
<ci>q_Ca_Neuro</ci>
<ci>k_sink_N</ci>
</apply>
</apply>
<ci>v_Ca_Nbas</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_NO</ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci>k_10</ci>
<ci>q_Ca_Neuro</ci>
</apply>
<apply>
<times/>
<ci>k_NO_sink</ci>
<ci>q_NO</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_cGMP</ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci>k_23</ci>
<ci>q_S3_cGMP</ci>
</apply>
<apply>
<times/>
<ci>k_sink_C</ci>
<ci>q_cGMP</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S1_cGMP</ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci>k_11</ci>
<ci>q_NO</ci>
</apply>
<apply>
<times/>
<ci>k_21</ci>
<ci>q_S1_cGMP</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S2_cGMP</ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci>k_21</ci>
<ci>q_S1_cGMP</ci>
</apply>
<apply>
<times/>
<ci>k_22</ci>
<ci>q_S2_cGMP</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S3_cGMP</ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci>k_22</ci>
<ci>q_S2_cGMP</ci>
</apply>
<apply>
<times/>
<ci>k_23</ci>
<ci>q_S3_cGMP</ci>
</apply>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="environment" component_2="Neuron"/>
<map_variables variable_1="time" variable_2="t"/>
</connection>
</model>
