- Author:
- Michael Pan <mpan92@gmail.com>
- Date:
- 2020-08-27 08:39:13+10:00
- Desc:
- Fixed units
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/4ce/rawfile/6baaa1d0bfa1a0772c316ab59631b619df2601f4/Code/CellML/Terkildsen_NaK_kinetic_Fig2b.cellml
<?xml version='1.0' encoding='UTF-8'?>
<model name="Terkildsen_NaK_kinetic_Fig2a" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Terkildsen_NaK_kinetic_modular.cellml">
<units name="per_second" units_ref="per_second"/>
<units name="mV" units_ref="mV"/>
<units name="mV_per_sec" units_ref="mV_per_sec"/>
<units name="mM" units_ref="mM"/>
</import>
<import xlink:href="Terkildsen_NaK_kinetic_modular.cellml">
<component component_ref="environment" name="NaK_ATPase"/>
</import>
<import xlink:href="Terkildsen_NaK_kinetic_modular.cellml">
<component component_ref="environment" name="NaK_ATPase2"/>
</import>
<import xlink:href="Terkildsen_NaK_kinetic_modular.cellml">
<component component_ref="environment" name="NaK_ATPase3"/>
</import>
<units name="per_um2">
<unit exponent="-2.0" prefix="micro" units="metre"/>
</units>
<units name="uA_per_uF">
<unit prefix="micro" units="ampere"/>
<unit exponent="-1.0" prefix="micro" units="farad"/>
</units>
<units name="uF_per_um2">
<unit prefix="micro" units="farad"/>
<unit exponent="-2.0" prefix="micro" units="metre"/>
</units>
<units name="uC">
<unit prefix="micro" units="coulomb"/>
</units>
<component name="environment">
<variable initial_value="0" name="t" units="second"/>
<variable initial_value="50" name="Nae1" public_interface="out" units="mM"/>
<variable initial_value="100" name="Nae2" public_interface="out" units="mM"/>
<variable initial_value="150" name="Nae3" public_interface="out" units="mM"/>
<variable initial_value="-140" name="Vm" public_interface="out" units="mV"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>Vm</ci>
</apply>
<cn cellml:units="mV_per_sec">1</cn>
</apply>
</math>
<variable name="v_cyc_nak1" public_interface="in" units="per_second"/>
<variable name="v_cyc_nak2" public_interface="in" units="per_second"/>
<variable name="v_cyc_nak3" public_interface="in" units="per_second"/>
<variable initial_value="1360.2624" name="pump_density" units="per_um2"/>
<variable initial_value="1e-8" name="membrane_capacitance" units="uF_per_um2"/>
<variable initial_value="1.6e-13" name="elementary_charge" units="uC"/>
<variable name="current_density1" units="uA_per_uF"/>
<variable name="current_density2" units="uA_per_uF"/>
<variable name="current_density3" units="uA_per_uF"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>current_density1</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>v_cyc_nak1</ci>
<ci>pump_density</ci>
<ci>elementary_charge</ci>
</apply>
<ci>membrane_capacitance</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>current_density2</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>v_cyc_nak2</ci>
<ci>pump_density</ci>
<ci>elementary_charge</ci>
</apply>
<ci>membrane_capacitance</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>current_density3</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>v_cyc_nak3</ci>
<ci>pump_density</ci>
<ci>elementary_charge</ci>
</apply>
<ci>membrane_capacitance</ci>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="environment" component_2="NaK_ATPase"/>
<map_variables variable_1="Nae1" variable_2="Nae"/>
<map_variables variable_1="Vm" variable_2="Vm"/>
<map_variables variable_1="v_cyc_nak1" variable_2="v_cyc_nak"/>
</connection>
<connection>
<map_components component_1="environment" component_2="NaK_ATPase2"/>
<map_variables variable_1="Nae2" variable_2="Nae"/>
<map_variables variable_1="Vm" variable_2="Vm"/>
<map_variables variable_1="v_cyc_nak2" variable_2="v_cyc_nak"/>
</connection>
<connection>
<map_components component_1="environment" component_2="NaK_ATPase3"/>
<map_variables variable_1="Nae3" variable_2="Nae"/>
<map_variables variable_1="Vm" variable_2="Vm"/>
<map_variables variable_1="v_cyc_nak3" variable_2="v_cyc_nak"/>
</connection>
</model>
