https://staging.physiomeproject.org/workspace/608 en-us rat flatmap Files for the rat flatmap. Uses `mapmaker` (https://github.com/dbrnz/flatmap-maker) to generate map datasets for a flatmap server (https://github.com/dbrnz/flatmap-server) and viewer (https://github.com/ABI-Software/flatmap-viewer). forestomach-glandular stomach junction is fixed https://staging.physiomeproject.org/workspace/608/@@file/4b92ad68f7ce52bfadf22621ea6de7686342a718 forestomach-glandular stomach junction is fixed &#78;&#97;&#122;&#97;&#110;&#105;&#110;&#32;&#69;&#98;&#114;&#97;&#104;&#105;&#109;&#105; 2022-07-19 Don't show image of vagus cross-section when zooming in. https://staging.physiomeproject.org/workspace/608/@@file/323db7e3031ea8447e0c52b1d856744010b6d40f Don't show image of vagus cross-section when zooming in. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2022-03-22 Lamina VII of L4 wasn't being detected because lamina IX components weren't quite touching. https://staging.physiomeproject.org/workspace/608/@@file/a45b0b6f54410c74cab54a50f828ad287abb63a5 Lamina VII of L4 wasn't being detected because lamina IX components weren't quite touching. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-21 Fix type of `S36_S1`. https://staging.physiomeproject.org/workspace/608/@@file/2f80144c852ba2cd53bb295a9e0f8d9f8b4f7b53 Fix type of `S36_S1`. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-21 Fix typo of `P308`. https://staging.physiomeproject.org/workspace/608/@@file/bf6fb8beb72fd7ec75c3414a693c170e16b093bc Fix typo of `P308`. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-21 Merge remote-tracking branch 'dbrooks/master' https://staging.physiomeproject.org/workspace/608/@@file/fc43b9dd939f0ba17ada6594bc25a612774aafdd Merge remote-tracking branch 'dbrooks/master' &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-10 Fix typos in connectivity identifiers. https://staging.physiomeproject.org/workspace/608/@@file/cded2bc16e1b81f1fe79bd048761ae1450ec88b1 Fix typos in connectivity identifiers. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-10 Use EMAPA:31256 as the identifier for bladder nerves (keast_1). https://staging.physiomeproject.org/workspace/608/@@file/82eab5b824406b268c9889e004553ac3f9f606d3 Use EMAPA:31256 as the identifier for bladder nerves (keast_1). &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-07 Add a dataset description file. https://staging.physiomeproject.org/workspace/608/@@file/1018a30afc1a675fcc6aa504204a0652ca059dff Add a dataset description file. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-12-04 Add a list of publications for the Keast bladder model. https://staging.physiomeproject.org/workspace/608/@@file/10945c15868ed0c98c6ddd2d5f5ab287c2f92b13 Add a list of publications for the Keast bladder model. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-08-15 Use SublimeText to `prettify` JSON to a standard format. https://staging.physiomeproject.org/workspace/608/@@file/e821fd0837ec03e60f0fdaf072cc5594040d5d3e Use SublimeText to `prettify` JSON to a standard format. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-08-15 And missing sub-path `P68` to `ilxtr:neuron-type-keast-11`. https://staging.physiomeproject.org/workspace/608/@@file/8438adacdfe1118547a3331e9f3b406a4eff3c2d And missing sub-path `P68` to `ilxtr:neuron-type-keast-11`. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-08-14 Tweak boundaries of regions `S33_L1` and `S42_L2` so that they are closed. https://staging.physiomeproject.org/workspace/608/@@file/0eb08a8b25f9d986b0fb227dfc6a47334af2f77e Tweak boundaries of regions `S33_L1` and `S42_L2` so that they are closed. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-08-14 Add neuron group identifiers for paths. https://staging.physiomeproject.org/workspace/608/@@file/052df554e6007e1637e82bb1ecd930ea58281095 Add neuron group identifiers for paths. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-08-02 Routes involving `urinary_6`, `urinary_7` and `urinary_8` where incorrect (in the viewer the wrong node was highlighted). https://staging.physiomeproject.org/workspace/608/@@file/abf255d1e23cfc87ea34c5f3a90866ac310d8124 Routes involving `urinary_6`, `urinary_7` and `urinary_8` where incorrect (in the viewer the wrong node was highlighted). &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-08-02 The urethera must have a `boundary` attribute in order to contain regions. https://staging.physiomeproject.org/workspace/608/@@file/747db4fb6fcfdeb82404e7ab1220129d2c11b7a2 The urethera must have a `boundary` attribute in order to contain regions. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-06-04 Reapply commit 29785ad: added urethra to the flatmap using an invisible divider https://staging.physiomeproject.org/workspace/608/@@file/9379a9f6b7ba251c5a052722f6737b6985b1e70b Reapply commit 29785ad: added urethra to the flatmap using an invisible divider &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-06-04 Reapply commit 25946a0: gave right label to spinal cord segment S3 https://staging.physiomeproject.org/workspace/608/@@file/dc713063c8834c2a7e456fbd57784bb789abb12d Reapply commit 25946a0: gave right label to spinal cord segment S3 &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-06-04 Reapply commit 5a36c5d: Show intestine details from zoom level 7 instead of level 6 https://staging.physiomeproject.org/workspace/608/@@file/d5c09bdf15db3dfc486174973f7ffb636eef6873 Reapply commit 5a36c5d: Show intestine details from zoom level 7 instead of level 6 &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-06-04 Reapply commit dbfad6f: Remove fill from superior cervical ganglion grouping bracket https://staging.physiomeproject.org/workspace/608/@@file/aedbc1e637effe91e75247296aa4d52603c149aa Reapply commit dbfad6f: Remove fill from superior cervical ganglion grouping bracket &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-06-04 Move connectivity from `properties` file into separate JSON files, adding some annotation to the Keast bladder model. https://staging.physiomeproject.org/workspace/608/@@file/b35f726b87e99aa70a9c5242dbfdd37eb5305b28 Move connectivity from `properties` file into separate JSON files, adding some annotation to the Keast bladder model. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-06-04 Get vagus section directly from `sparc.science`. https://staging.physiomeproject.org/workspace/608/@@file/e4dd253e346b31ccd1f293d6149cef53f15f54b6 Get vagus section directly from `sparc.science`. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-05-21 Save from Adobe Illustrator, reordering SVG, with coordinates to three decimal places. https://staging.physiomeproject.org/workspace/608/@@file/44bdf4f4588d064b1105ba789cea2d88450b71eb Save from Adobe Illustrator, reordering SVG, with coordinates to three decimal places. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-05-21 Revert `whole-rat.svg` to commit 7f8c4bb in order to reapply changes as Adobe Illustrator has lost decimal places... https://staging.physiomeproject.org/workspace/608/@@file/8797e235b2f7a8f29c6cbf60f31409c4e2e46505 Revert `whole-rat.svg` to commit 7f8c4bb in order to reapply changes as Adobe Illustrator has lost decimal places... &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-05-21 Keep style information with presentation elements instead of in a separate <style> block. This will simplify comparing different versions of a file. https://staging.physiomeproject.org/workspace/608/@@file/c6e35c65477871a378be7df866235e50d8250faa Keep style information with presentation elements instead of in a separate <style> block. This will simplify comparing different versions of a file. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-05-14 added urethra to the flatmap using an invisible divider https://staging.physiomeproject.org/workspace/608/@@file/29785adc5cbbdbd69cfb72950dcfc61b33817672 added urethra to the flatmap using an invisible divider &#78;&#97;&#122; 2021-04-16 gave right label to spinal cord segment S3 https://staging.physiomeproject.org/workspace/608/@@file/25946a0fe177c3baabaa11a4b8fa0cea6a91e151 gave right label to spinal cord segment S3 &#78;&#97;&#122; 2021-04-16 Show intestine details from zoom level 7 instead of level 6 https://staging.physiomeproject.org/workspace/608/@@file/5a36c5db64705bdc9c4e11fb22760a57e79166e2 Show intestine details from zoom level 7 instead of level 6 &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-01-12 Remove fill from superior cervical ganglion grouping bracket https://staging.physiomeproject.org/workspace/608/@@file/dbfad6fd340a6c6359ea75a98b39f14e186889b3 Remove fill from superior cervical ganglion grouping bracket &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-01-12 Save from Adobe Illustrator (which reorders SVG) https://staging.physiomeproject.org/workspace/608/@@file/ff682a436f689e4cc55a14ea9b4072f02ee311d5 Save from Adobe Illustrator (which reorders SVG) &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2021-01-12 Add vagus nerve cross section as an image. https://staging.physiomeproject.org/workspace/608/@@file/7f8c4bb76f2a1f23f0331bd898e22e0555bc45aa Add vagus nerve cross section as an image. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-17 Update converted SVGs with correct elliptical arcs. https://staging.physiomeproject.org/workspace/608/@@file/7437acfc04063f922068558096df791e910d625a Update converted SVGs with correct elliptical arcs. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-08 New SVGs with gradient fills and better fill colour conversion. https://staging.physiomeproject.org/workspace/608/@@file/4006cc379cfd40883c892e513bba14f100f255c6 New SVGs with gradient fills and better fill colour conversion. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-06 Use transparent white for when no fill type is given. https://staging.physiomeproject.org/workspace/608/@@file/a9b7e148a56b00dfb082ca837f41698645fd713d Use transparent white for when no fill type is given. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-02 Rat flatmap in SVG. https://staging.physiomeproject.org/workspace/608/@@file/28da967535b6036e8a81da33d8db7ff831b291fc Rat flatmap in SVG. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-02 Add a manifest file. https://staging.physiomeproject.org/workspace/608/@@file/c5abce313d9c4c933747bd6f8994752d580fb43f Add a manifest file. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-01 Use `boundary` to specify boundary feature of tissue layer. https://staging.physiomeproject.org/workspace/608/@@file/2bd581e0b94a0293c5691478bca69e38fe1dc90a Use `boundary` to specify boundary feature of tissue layer. &#68;&#97;&#118;&#105;&#100;&#32;&#66;&#114;&#111;&#111;&#107;&#115; 2020-12-01 rat flatmap files added. https://staging.physiomeproject.org/workspace/608/@@file/f2a6e0f8ee9f8bf5558b1ead9da5311ff0163c48 rat flatmap files added. &#78;&#97;&#122; 2020-11-16