Location: Generic pig colon scaffold @ 9e2fb6a5edba / Input-settings.json

Author:
Mabelle Lin <mlin865@aucklanduni.ac.nz>
Date:
2020-11-27 15:05:02+13:00
Desc:
Update README
Permanent Source URI:
https://staging.physiomeproject.org/workspace/613/rawfile/9e2fb6a5edbaf95a5f276bdc9d7be6cabbf600a1/Input-settings.json

{
    "generator_settings": {
        "deleteElementRanges": "",
        "displayAxes": true,
        "displayElementAxes": false,
        "displayElementNumbers": false,
        "displayLines": true,
        "displayLinesExterior": false,
        "displayMarkerPoints": false,
        "displayModelRadius": false,
        "displayNodeDerivativeLabels": [
            "D3"
        ],
        "displayNodeDerivatives": false,
        "displayNodeNumbers": false,
        "displayNodePoints": false,
        "displaySurfaces": true,
        "displaySurfacesExterior": true,
        "displaySurfacesTranslucent": false,
        "displaySurfacesWireframe": false,
        "scaffoldPackage": {
            "_ScaffoldPackage": true,
            "rotation": [
                0.0,
                0.0,
                0.0
            ],
            "scaffoldSettings": {
                "Central path": {
                    "_ScaffoldPackage": true,
                    "meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n -7.200000000000000e+00 -6.520000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  8.330000000000000e+01 -8.100000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n -2.070000000000000e+01  7.600000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 2\n -6.850000000000000e+01 -4.010000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  5.280000000000000e+01 -3.610000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -9.600000000000000e+00  1.070000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 3\n -9.740000000000001e+01  1.800000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -2.630000000000000e+01 -9.320000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  5.700000000000000e+00  1.370000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 4\n -5.680000000000000e+01  6.550000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -9.050000000000000e+01 -4.140000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.410000000000000e+01  7.300000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 5\n  4.890000000000000e+01  1.122000000000000e+02  0.000000000000000e+00  0.000000000000000e+00\n -1.008000000000000e+02  4.010000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  2.400000000000000e+01  1.900000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 6\n  1.148000000000000e+02  8.199999999999999e+00  0.000000000000000e+00  0.000000000000000e+00\n -1.260000000000000e+01  9.609999999999999e+01  0.000000000000000e+00  0.000000000000000e+00\n  3.870000000000000e+01  1.420000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 7\n  6.030000000000000e+01 -1.087000000000000e+02  0.000000000000000e+00  0.000000000000000e+00\n  8.350000000000000e+01  5.410000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  4.370000000000000e+01  2.240000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 8\n -4.120000000000000e+01 -8.900000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  9.070000000000000e+01 -3.240000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  5.630000000000000e+01  1.440000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 9\n -1.079000000000000e+02  1.110000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -9.699999999999999e+00 -9.440000000000001e+01  0.000000000000000e+00  0.000000000000000e+00\n  7.659999999999999e+01  1.130000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 10\n -5.730000000000000e+01  7.120000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -9.190000000000001e+01 -3.120000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  8.130000000000000e+01  5.700000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 11\n  5.120000000000000e+01  9.909999999999999e+01  0.000000000000000e+00  0.000000000000000e+00\n -8.940000000000001e+01  5.540000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  9.720000000000000e+01  1.290000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 12\n  9.159999999999999e+01  4.700000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  9.300000000000001e+00  5.120000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.036000000000000e+02  3.400000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 13\n  6.160000000000000e+01 -8.520000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.118000000000000e+02  4.610000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.096000000000000e+02  2.600000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 14\n -5.460000000000000e+01 -9.270000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  9.190000000000001e+01 -5.500000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.294000000000000e+02  1.450000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 15\n -1.090000000000000e+02  2.360000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  5.600000000000000e+00 -1.082000000000000e+02  0.000000000000000e+00  0.000000000000000e+00\n  1.569000000000000e+02  2.770000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 16\n -5.910000000000000e+01  7.400000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -6.250000000000000e+01 -2.010000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.708000000000000e+02  1.440000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 17\n  2.350000000000000e+01  8.459999999999999e+01  0.000000000000000e+00  0.000000000000000e+00\n -5.320000000000000e+01  4.700000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.797000000000000e+02  6.900000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 18\n  6.230000000000000e+01 -1.280000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  3.010000000000000e+01  5.800000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.875000000000000e+02  8.000000000000000e-01  5.000000000000000e+00  5.000000000000000e-01\nNode: 19\n  2.240000000000000e+01 -2.360000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  4.520000000000000e+01 -3.450000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.811000000000000e+02 -7.400000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 20\n -1.900000000000000e+00 -4.130000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  4.900000000000000e+00 -3.090000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.805000000000000e+02  7.500000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 21\n -4.510000000000000e+01 -4.050000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -1.260000000000000e+01 -4.600000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  1.944000000000000e+02  6.900000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 22\n -7.170000000000000e+01 -2.520000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -2.200000000000000e+00  3.580000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.972000000000000e+02 -6.800000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 23\n -6.580000000000000e+01  2.660000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  4.210000000000000e+01  3.760000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.823000000000000e+02 -1.560000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 24\n -1.410000000000000e+01  4.100000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  8.120000000000000e+01  1.030000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.635000000000000e+02 -9.500000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 25\n  6.170000000000000e+01  7.790000000000001e+01  0.000000000000000e+00  0.000000000000000e+00\n  8.609999999999999e+01 -4.070000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.564000000000000e+02  8.900000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 26\n  9.290000000000001e+01  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  2.050000000000000e+01 -7.330000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.503000000000000e+02 -5.200000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 27\n  4.890000000000000e+01 -8.280000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -6.500000000000000e+01 -8.000000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.428000000000000e+02 -1.900000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 28\n -5.430000000000000e+01 -6.010000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -9.080000000000000e+01  2.640000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.340000000000000e+02 -8.199999999999999e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 29\n -8.990000000000001e+01  3.490000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  1.120000000000000e+01  1.251000000000000e+02  0.000000000000000e+00  0.000000000000000e+00\n  1.150000000000000e+02 -2.790000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 30\n -1.740000000000000e+01  7.880000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  7.420000000000000e+01  1.910000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  9.109999999999999e+01 -1.540000000000000e+01  5.000000000000000e+00  5.000000000000000e-01\nNode: 31\n  4.340000000000000e+01  3.020000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  5.020000000000000e+01 -3.600000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  7.330000000000000e+01 -9.900000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 32\n  6.240000000000000e+01  1.090000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -5.100000000000000e+00 -5.420000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  6.350000000000000e+01 -2.700000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 33\n  3.270000000000000e+01 -3.860000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n -5.170000000000000e+01 -2.980000000000000e+01  0.000000000000000e+00  0.000000000000000e+00\n  5.610000000000000e+01 -8.100000000000000e+00  5.000000000000000e+00  5.000000000000000e-01\nNode: 34\n -3.810000000000000e+01 -6.250000000000000e+01  4.000000000000000e+00  0.000000000000000e+00\n -2.860000000000000e+01  8.259999999999999e+01  6.800000000000000e+00  0.000000000000000e+00\n  4.680000000000000e+01 -1.920000000000000e+01  1.320000000000000e+01  5.000000000000000e-01\nNode: 35\n  5.700000000000000e+00  1.448000000000000e+02  4.300000000000000e+00  0.000000000000000e+00\n  4.040000000000000e+01  1.860000000000000e+01 -1.330000000000000e+01  0.000000000000000e+00\n  2.240000000000000e+01 -2.050000000000000e+01  1.230000000000000e+01  5.000000000000000e-01\nNode: 36\n  5.300000000000000e+01 -6.000000000000000e+00 -1.350000000000000e+01  0.000000000000000e+00\n -1.470000000000000e+01 -2.570000000000000e+01 -1.940000000000000e+01  0.000000000000000e+00\n -4.100000000000000e+00 -4.670000000000000e+01  4.000000000000000e+00  5.000000000000000e-01\nNode: 37\n  2.480000000000000e+01 -1.340000000000000e+01 -1.740000000000000e+01  0.000000000000000e+00\n -4.000000000000000e-01  2.390000000000000e+01 -1.510000000000000e+01  0.000000000000000e+00\n -4.880000000000000e+01 -3.060000000000000e+01  6.400000000000000e+00  5.000000000000000e-01\nNode: 38\n -2.090000000000000e+01 -5.120000000000000e+01  7.100000000000000e+00  0.000000000000000e+00\n  1.530000000000000e+01 -3.060000000000000e+01 -7.700000000000000e+00  0.000000000000000e+00\n -7.790000000000001e+01  2.110000000000000e+01  1.220000000000000e+01  5.000000000000000e-01\nNode: 39\n -4.760000000000000e+01  3.260000000000000e+01 -1.280000000000000e+01  0.000000000000000e+00\n  3.390000000000000e+01  3.070000000000000e+01 -5.000000000000000e-01  0.000000000000000e+00\n -1.122000000000000e+02 -2.780000000000000e+01 -1.600000000000000e+00  5.000000000000000e-01\nNode: 40\n  1.960000000000000e+01  1.990000000000000e+01 -1.260000000000000e+01  0.000000000000000e+00\n  9.600000000000000e+01  1.910000000000000e+01  1.300000000000000e+00  0.000000000000000e+00\n -1.675000000000000e+02 -1.840000000000000e+01 -8.100000000000000e+00  5.000000000000000e-01\n",
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Coordinate dimensions": 3,
                        "D2 derivatives": true,
                        "D3 derivatives": false,
                        "Length": 1.0,
                        "Number of elements": 39
                    },
                    "scaffoldTypeName": "1D Path 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Distal inner radius": 8.0,
                "Distal length": 200.0,
                "Distal tenia coli width": 1.5,
                "Number of segments": 120,
                "Proximal inner radius": 38.0,
                "Proximal length": 3000.0,
                "Proximal tenia coli width": 5.0,
                "Proximal-transverse inner radius": 14.0,
                "Proximal-transverse tenia coli width": 4.0,
                "Refine": false,
                "Refine number of elements along": 1,
                "Refine number of elements around": 1,
                "Refine number of elements through wall": 1,
                "Segment profile": {
                    "_ScaffoldPackage": true,
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Corner inner radius factor": 0.0,
                        "End inner radius": 20.0,
                        "End inner radius derivative": 0.0,
                        "End tenia coli width": 5.0,
                        "End tenia coli width derivative": 0.0,
                        "Haustrum inner radius factor": 0.2,
                        "Number of elements along segment": 4,
                        "Number of elements around haustrum": 8,
                        "Number of elements around tenia coli": 2,
                        "Number of elements through wall": 1,
                        "Number of tenia coli": 2,
                        "Refine": false,
                        "Refine number of elements along segment": 1,
                        "Refine number of elements around": 1,
                        "Refine number of elements through wall": 1,
                        "Segment length": 25.0,
                        "Segment length end derivative factor": 0.8,
                        "Segment length mid derivative factor": 2.0,
                        "Start inner radius": 20.0,
                        "Start inner radius derivative": 0.0,
                        "Start phase": 0.0,
                        "Start tenia coli width": 5.0,
                        "Start tenia coli width derivative": 0.0,
                        "Tenia coli thickness": 0.5,
                        "Use cross derivatives": false,
                        "Use linear through wall": true,
                        "Wall thickness": 2.0
                    },
                    "scaffoldTypeName": "3D Colon Segment 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Start phase": 0.0,
                "Transverse length": 200.0,
                "Transverse-distal inner radius": 10.5,
                "Transverse-distal tenia coli width": 3.0
            },
            "scaffoldTypeName": "3D Colon 1",
            "scale": [
                1.0,
                1.0,
                1.0
            ],
            "translation": [
                0.0,
                0.0,
                0.0
            ]
        }
    },
    "segmentation_data_settings": {
        "displayDataContours": true,
        "displayDataMarkerNames": true,
        "displayDataMarkerPoints": true,
        "displayDataPoints": false,
        "displayDataRadius": false
    }
}