- Author:
- Alan Garny <agarny@hellix.com>
- Date:
- 2021-06-11 09:51:39+12:00
- Desc:
- Removed CSV that can be regenerated.
Figure1.csv and Figure2.csv can be generated by running Figure1.sedml and Figure2.sedml, respectively, and then exporting the simulation results to CSV. So, no need for those CSV files to be tracked.
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/648/rawfile/4e662cb87f8569d10d40251b876798d0d92f68f7/Figure1.sedml
<?xml version='1.0' encoding='UTF-8'?>
<sedML level="1" version="3" xmlns="http://sed-ml.org/sed-ml/level1/version3" xmlns:cellml="http://www.cellml.org/cellml/1.0#">
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0" numberOfPoints="1600" outputEndTime="1.6" outputStartTime="0">
<algorithm kisaoID="KISAO:0000019">
<listOfAlgorithmParameters>
<algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
<algorithmParameter kisaoID="KISAO:0000481" value="true"/>
<algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
<algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
<algorithmParameter kisaoID="KISAO:0000480" value="0"/>
<algorithmParameter kisaoID="KISAO:0000415" value="500"/>
<algorithmParameter kisaoID="KISAO:0000467" value="0"/>
<algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
<algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000479" value="0"/>
</listOfAlgorithmParameters>
</algorithm>
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model" language="urn:sedml:language:cellml.1_0" source="HumanSAN_Fabbri_Fantini_Wilders_Severi_2017.cellml"/>
</listOfModels>
<listOfTasks>
<repeatedTask id="repeatedTask" range="once" resetModel="true">
<listOfRanges>
<vectorRange id="once">
<value> 1 </value>
</vectorRange>
</listOfRanges>
<listOfSubTasks>
<subTask order="1" task="task1"/>
</listOfSubTasks>
</repeatedTask>
<task id="task1" modelReference="model" simulationReference="simulation1"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="xDataGenerator1_1">
<listOfVariables>
<variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_1">
<listOfVariables>
<variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='Membrane']/cellml:variable[@name='V']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator2_1">
<listOfVariables>
<variable id="xVariable2_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator2_1">
<listOfVariables>
<variable id="yVariable2_1" target="/cellml:model/cellml:component[@name='Ca_dynamics']/cellml:variable[@name='Cai']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable2_1 </ci>
</math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1">
<annotation>
<properties version="2" xmlns="http://www.opencor.ws/">
<backgroundColor>#ffffff</backgroundColor>
<fontSize>10</fontSize>
<foregroundColor>#000000</foregroundColor>
<height>1</height>
<gridLines>
<style>dot</style>
<width>1</width>
<color>#a0a0a4</color>
</gridLines>
<legend>
<fontSize>10</fontSize>
<visible>true</visible>
</legend>
<pointCoordinates>
<style>dash</style>
<width>1</width>
<color>#b0008080</color>
<fontColor>#ffffff</fontColor>
<fontSize>10</fontSize>
</pointCoordinates>
<surroundingArea>
<backgroundColor>#f0f0f0</backgroundColor>
<foregroundColor>#000000</foregroundColor>
</surroundingArea>
<title/>
<xAxis>
<fontSize>10</fontSize>
<logarithmicScale>false</logarithmicScale>
<title/>
</xAxis>
<yAxis>
<fontSize>10</fontSize>
<logarithmicScale>false</logarithmicScale>
<title/>
</yAxis>
<zoomRegion>
<style>solid</style>
<width>1</width>
<color>#b0800000</color>
<fontColor>#ffffff</fontColor>
<fontSize>10</fontSize>
<filled>true</filled>
<fillColor>#30ffff00</fillColor>
</zoomRegion>
</properties>
</annotation>
<listOfCurves>
<curve id="curve1_1" logX="false" logY="false" xDataReference="xDataGenerator1_1" yDataReference="yDataGenerator1_1">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<selected>true</selected>
<title>V</title>
<line>
<style>solid</style>
<width>2</width>
<color>#0072bd</color>
</line>
<symbol>
<style>none</style>
<size>8</size>
<color>#0072bd</color>
<filled>true</filled>
<fillColor>#ffffff</fillColor>
</symbol>
</properties>
</annotation>
</curve>
</listOfCurves>
</plot2D>
<plot2D id="plot2">
<annotation>
<properties version="2" xmlns="http://www.opencor.ws/">
<backgroundColor>#ffffff</backgroundColor>
<fontSize>10</fontSize>
<foregroundColor>#000000</foregroundColor>
<height>1</height>
<gridLines>
<style>dot</style>
<width>1</width>
<color>#a0a0a4</color>
</gridLines>
<legend>
<fontSize>10</fontSize>
<visible>true</visible>
</legend>
<pointCoordinates>
<style>dash</style>
<width>1</width>
<color>#b0008080</color>
<fontColor>#ffffff</fontColor>
<fontSize>10</fontSize>
</pointCoordinates>
<surroundingArea>
<backgroundColor>#f0f0f0</backgroundColor>
<foregroundColor>#000000</foregroundColor>
</surroundingArea>
<title/>
<xAxis>
<fontSize>10</fontSize>
<logarithmicScale>false</logarithmicScale>
<title/>
</xAxis>
<yAxis>
<fontSize>10</fontSize>
<logarithmicScale>false</logarithmicScale>
<title/>
</yAxis>
<zoomRegion>
<style>solid</style>
<width>1</width>
<color>#b0800000</color>
<fontColor>#ffffff</fontColor>
<fontSize>10</fontSize>
<filled>true</filled>
<fillColor>#30ffff00</fillColor>
</zoomRegion>
</properties>
</annotation>
<listOfCurves>
<curve id="curve2_1" logX="false" logY="false" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<selected>true</selected>
<title>Cai</title>
<line>
<style>solid</style>
<width>2</width>
<color>#0072bd</color>
</line>
<symbol>
<style>none</style>
<size>8</size>
<color>#0072bd</color>
<filled>true</filled>
<fillColor>#ffffff</fillColor>
</symbol>
</properties>
</annotation>
</curve>
</listOfCurves>
</plot2D>
</listOfOutputs>
</sedML>