- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2021-07-27 14:55:57+12:00
- Desc:
- 1. Move phiT to the gating_kinetics;
2. Add time constant (time_const) in the model gate_steady;
3. Import cellLib to reuse the modules unit, time, gating_kinetics, phiT (temperature_factor), protocols, etc
4. Move units, time, temperature_factor (renamed to phiT), periodic-IStim-protocol, Voltage_ramp_protocol, gating-variable and gate_steady to cellLib
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/64f/rawfile/eb2aeec4e8d211b62d370fd78bd1fa1174bb13ab/doc/experiments.rst
Experiments
---------------------
Following best practices, this model separates the mathematics from the parameterisation of the model. The mathematical model is imported into a specific parameterised instance in order to perform numerical simulations.
The parameterisation would include defining the stimulus protocol to be applied.
This workspace has three sets of experiment:
1. `Periodic stimulation <../experiments/periodic-stimulus.cellml/view>`_
2. `Voltage clamp experiment <../experiments/voltage_clamp_experiment.cellml/view>`_
3. `Action potential propagation along 1D cable model <../experiments/AP_propagation_experiment.cellml/view>`_
Simulation settings
-------------------
Simulation settings are encoded in SED-ML_ documents for experiment execution.
The python scripts to run simulation and reproduce the figures in the original paper are also included.
.. _SED-ML: http://sed-ml.org/
