Experiments protocols
---------------------

Following best practices, this model separates the mathematics from the parameterisation of the model. The mathematical model is imported into a specific parameterised instance in order to perform numerical simulations. 
The parameterisation would include defining the stimulus protocol to be applied.

This workspace has three sets of experiments:

1. `Periodic stimulation <../experiments/periodic-stimulus.cellml/view>`_:     

2. `Voltage clamp experiment <../experiments/voltage_clamp_experiment.cellml/view>`_: 

3. `Action potential propagation along 1D cable model <../experiments/AP_propagation_experiment.cellml/view>`_ (please see :ref:`issues-label`): 

Simulation settings 
-------------------
Simulation settings are encoded in SED-ML_ documents for experiment execution. 
The python scripts to run simulation and reproduce the figures in the original paper are also included.

.. _SED-ML: http://sed-ml.org/