https://staging.physiomeproject.org/workspace/674 en-us BG_cAMP Bond graph formulation of cyclic AMP module , with effects from both Gs and Gi proteins on adenylyl cyclase Remove text https://staging.physiomeproject.org/workspace/674/@@file/83293df373c6041b4f12d26ee98b23acb22ce935 Remove text Shelley Fong 2025-05-13 Update pic and remove ADP https://staging.physiomeproject.org/workspace/674/@@file/9b691c419be3a24db9ae8bd8367e0419bf1dfc96 Update pic and remove ADP Shelley Fong 2025-05-13 Update pictures and text https://staging.physiomeproject.org/workspace/674/@@file/3b89f3e961a562cf8a64d715cc91d51611c51597 Update pictures and text Shelley Fong 2025-05-12 Updating diagram and adding rdf https://staging.physiomeproject.org/workspace/674/@@file/a2676635f2ff3f8d19c3f599efbdd0a1a82d0ba8 Updating diagram and adding rdf Shelley Fong 2025-04-07 Updating way cellml is written https://staging.physiomeproject.org/workspace/674/@@file/c68eb6e8bb923a34a47d383069914fe831c6e206 Updating way cellml is written Shelley Fong 2022-02-18 formatting 2 https://staging.physiomeproject.org/workspace/674/@@file/3bb9ea9284bd150c01d130c38291a851b7d0ac03 formatting 2 Shelley Fong 2022-01-20 formatting https://staging.physiomeproject.org/workspace/674/@@file/2c9e21d94212bf1a53df7045b2768a1f38de0ab1 formatting Shelley Fong 2022-01-19 fleshed rst https://staging.physiomeproject.org/workspace/674/@@file/780c7f29aeb60760195744236d1e0661fce71e71 fleshed rst Shelley Fong 2022-01-14 fleshed rst https://staging.physiomeproject.org/workspace/674/@@file/fa9b0dc5a19adca2aa290d3c3f402a045f3e576b fleshed rst Shelley Fong 2022-01-14 updating rst https://staging.physiomeproject.org/workspace/674/@@file/9642a25225c9a1fd1de97439849b86c9e72cf85e updating rst Shelley Fong 2022-01-14 updating rst https://staging.physiomeproject.org/workspace/674/@@file/ea49f618e0f66f0b21b447df47b043704f53773e updating rst Shelley Fong 2022-01-14 updating rst https://staging.physiomeproject.org/workspace/674/@@file/1aed66476635dc21c7a63e82cde4ddd17a7ad887 updating rst Shelley Fong 2022-01-14 init https://staging.physiomeproject.org/workspace/674/@@file/23630be5849862c087082d8a0c2413b0a398dd2a init Shelley Fong 2022-01-14 Updating names of GsaGTP and GiaGTP https://staging.physiomeproject.org/workspace/674/@@file/b2070ffa54db6cc707aaa0feaeee5c7f5f9cda7e Updating names of GsaGTP and GiaGTP Shelley Fong 2021-12-03 Updating Knames https://staging.physiomeproject.org/workspace/674/@@file/171913e3810bcb4c54d96316897798c6233e72e6 Updating Knames Shelley Fong 2021-11-26 Using sympy for rational nullspace https://staging.physiomeproject.org/workspace/674/@@file/aee62d9515c8ac80cb8542b1e25f565fbd2b674d Using sympy for rational nullspace Shelley Fong 2021-11-17 Finding rational nullspace https://staging.physiomeproject.org/workspace/674/@@file/5ca639e226a5252a3bbc32a965fb14f8662f8c3e Finding rational nullspace Shelley Fong 2021-11-16 Automating more https://staging.physiomeproject.org/workspace/674/@@file/caade9c58abee071caf35e28edcbbabcc80afddc Automating more Shelley Fong 2021-11-02 consolidating with local changes https://staging.physiomeproject.org/workspace/674/@@file/ff3824a183f77817dab311615ec322e2b7047106 consolidating with local changes Shelley Fong 2021-10-29 Renaming kinetic_parameters.py https://staging.physiomeproject.org/workspace/674/@@file/f2db4ae012e325cbb19242a5fc10bb5e55942ae8 Renaming kinetic_parameters.py Shelley Fong 2021-10-28 Renaming Kname https://staging.physiomeproject.org/workspace/674/@@file/4425ba143e761d93313296ab62a018b14ee548d5 Renaming Kname Shelley Fong 2021-10-27 Renaming Kname https://staging.physiomeproject.org/workspace/674/@@file/ded477fd290d93c16f1b29bb8b0202e22ad5c0bc Renaming Kname Shelley Fong 2021-10-27 Fixing bugs https://staging.physiomeproject.org/workspace/674/@@file/078430942511b629e45d55e54c479c1d490c9c8f Fixing bugs Shelley Fong 2021-10-22 Removing MATLAB files https://staging.physiomeproject.org/workspace/674/@@file/608d21603af9331cbc3090118e25eace9a046077 Removing MATLAB files Shelley Fong 2021-10-20 Adding remaining python files or modifications https://staging.physiomeproject.org/workspace/674/@@file/af6183948e98933aea48299449589dc9af0014a0 Adding remaining python files or modifications Shelley Fong 2021-10-20 Renaming folder https://staging.physiomeproject.org/workspace/674/@@file/28c100b6204864b2a7212e536699cfd6472fa1f7 Renaming folder Shelley Fong 2021-10-19 Adding conservation of chemostat mass check in environment. Fixing ICs to have negligible enzyme complexes https://staging.physiomeproject.org/workspace/674/@@file/6ef773d793a7f6e466557b4b29d865c5c9769084 Adding conservation of chemostat mass check in environment. Fixing ICs to have negligible enzyme complexes Shelley Fong 2021-10-11 Adding PPi https://staging.physiomeproject.org/workspace/674/@@file/68596addf07910cee9973cfb622cda76dd15c802 Adding PPi Shelley Fong 2021-10-06 Adding pyrophosphate group https://staging.physiomeproject.org/workspace/674/@@file/e2b2c1a51f8fd69ee1f41aaaf30c73c622e3c244 Adding pyrophosphate group Shelley Fong 2021-10-04 Fixing allowance for GiAC routine https://staging.physiomeproject.org/workspace/674/@@file/d14443bc60c38bf717cd6184699193981385d36e Fixing allowance for GiAC routine Shelley Fong 2021-09-24 Using common PMR repo for units_and_constants https://staging.physiomeproject.org/workspace/674/@@file/abd7cace0d03c661c841af8853f3fec67e574c9f Using common PMR repo for units_and_constants Shelley Fong 2021-09-17 removing kinetic files https://staging.physiomeproject.org/workspace/674/@@file/ae7da83f2991a76a79910c5e0fd35c19b611f1d0 removing kinetic files Shelley Fong 2021-09-15 Adding Gi inhibition to adenylyl cyclase to network https://staging.physiomeproject.org/workspace/674/@@file/ce945cd491f25f069ba367c0770965a4c667a572 Adding Gi inhibition to adenylyl cyclase to network Shelley Fong 2021-09-15 Joining a_GTP and GsT as the same thing https://staging.physiomeproject.org/workspace/674/@@file/172ae7edb5c9e85b6252b63b0f8fabaa93e36c2f Joining a_GTP and GsT as the same thing Shelley Fong 2021-09-15 Updating name of a_GTP https://staging.physiomeproject.org/workspace/674/@@file/92f736218572ab631babc35781c051a41268a48c Updating name of a_GTP Shelley Fong 2021-09-15 updating cellml files https://staging.physiomeproject.org/workspace/674/@@file/0638ad8cc521adabcc15a354e05ada60d639dc9d updating cellml files Shelley Fong 2021-09-10 Adding units file https://staging.physiomeproject.org/workspace/674/@@file/8eeec8147b6981b78656a063cb74aa0b9179ec3c Adding units file Shelley Fong 2021-09-10 adding Pub: out https://staging.physiomeproject.org/workspace/674/@@file/d5b696eea9862ea916f0502dbcb27ed543edd8e5 adding Pub: out Shelley Fong 2021-09-07 Bug fixes https://staging.physiomeproject.org/workspace/674/@@file/c414e184e7cb7491f44d442b49775eb7eefff1f3 Bug fixes Shelley Fong 2021-09-06 Changing directory of main script https://staging.physiomeproject.org/workspace/674/@@file/49272be6036f8e33992029fdd8081091d0dba936 Changing directory of main script Shelley Fong 2021-08-25 Adjusted solver settings for sedml https://staging.physiomeproject.org/workspace/674/@@file/9baa1491c3934425ea95be1be4b62dae77d9f04b Adjusted solver settings for sedml Shelley Fong 2021-08-25 Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) https://staging.physiomeproject.org/workspace/674/@@file/3b4e9b848bf30fcd926aacbdcf226d68ad15e0de Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) Shelley Fong 2021-08-25 using constants_BG.cellml import https://staging.physiomeproject.org/workspace/674/@@file/4b0369f0aaf03b4042622388895ca4f40f17af8e using constants_BG.cellml import Shelley Fong 2021-07-26 Removing unnecessary file https://staging.physiomeproject.org/workspace/674/@@file/45dbee884dd9888b6623822ea226e0877d0fc426 Removing unnecessary file Shelley Fong 2021-07-26 Removing unnecessary file https://staging.physiomeproject.org/workspace/674/@@file/cd32910803956b96b66e32550e24b345d518c9ba Removing unnecessary file Shelley Fong 2021-07-26 Adding MATLAB script to call function to find kinetic parameters. One for each module. https://staging.physiomeproject.org/workspace/674/@@file/5d7ccd568c6d72e9dbf78403bee65d386f71eec5 Adding MATLAB script to call function to find kinetic parameters. One for each module. Shelley Fong 2021-07-26 Removing unnecessary files https://staging.physiomeproject.org/workspace/674/@@file/d29401fb021b702a4deac586d4d7ec0eb7717f24 Removing unnecessary files Shelley Fong 2021-07-22 Adding constraint of Gibbs free energy for PDE reaction https://staging.physiomeproject.org/workspace/674/@@file/807b1b4db76b95ba92b2cab7115970c165927585 Adding constraint of Gibbs free energy for PDE reaction Shelley Fong 2021-07-21 Renaming variables https://staging.physiomeproject.org/workspace/674/@@file/cd875ffb40aaefb17d7d2609b05efcc9a98ac286 Renaming variables Shelley Fong 2021-07-07 Codes to reproduce Saucerman Figs 2 and 3a https://staging.physiomeproject.org/workspace/674/@@file/348913e60cebcf090b62de195a8a13165b1512f7 Codes to reproduce Saucerman Figs 2 and 3a Shelley Fong 2021-06-21