Location: Model of Human Jejunal Smooth Muscle Cell Electrophysiology @ b98a10f69ee7 / Doc / Experiments.rst

WeiweiAi <wai484@aucklanduni.ac.nz>
2021-07-06 11:22:35+12:00
Change the figures size to fit the Physiome paper; Adjust the solver setting to remove the notch in Fig6. Minor editting in README.
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Following best practices, this model separates the mathematics from the parameterisation of the model. The mathematical model is imported into a specific parameterised instance in order to perform numerical simulations. 
The parameterisation would include defining the stimulus protocol to be applied.

This workspace has three sets of experiments and corresponding simulation results:

1. `Periodic stimulation experiment <Experiments/Periodic_stimulation.cellml/view>`_     

2. `Voltage clamp experiment <Experiments/Patch_clampXi_experiment.cellml/view>`_ 
3. `Sensitivity analysis experiment <Experiments/Periodic_stimulation_SA.cellml/view>`_ 

Simulation settings 
Simulation settings are encoded in SED-ML_ documents for experiment execution. 
The python scripts to run simulation and reproduce the figures in the original paper are also included.

.. _SED-ML: http://sed-ml.org/