https://staging.physiomeproject.org/workspace/6ba en-us BG_B1AR BG model of beta1 adrenergic receptor module of Saucerman2003 paper. Updating BG diagrams https://staging.physiomeproject.org/workspace/6ba/@@file/f93a81df89503de03ab8b54e7c34531f884aca75 Updating BG diagrams Shelley Fong 2022-01-13 Updating Knames https://staging.physiomeproject.org/workspace/6ba/@@file/b54d3822e5657cc96d359b66888984c3f85f25c7 Updating Knames Shelley Fong 2021-11-26 style fix https://staging.physiomeproject.org/workspace/6ba/@@file/3a8c75951d449610efa1a662c057357d908d545e style fix Shelley Fong 2021-11-18 style fix https://staging.physiomeproject.org/workspace/6ba/@@file/13053fca40db6e985b1b8fbfa7589f3a64721b90 style fix Shelley Fong 2021-11-18 style fix https://staging.physiomeproject.org/workspace/6ba/@@file/ff59f140bcdfed6bcbe9f963515fb1d94ec0e98f style fix Shelley Fong 2021-11-18 increase figure size https://staging.physiomeproject.org/workspace/6ba/@@file/93bf4a7b55e8ccce7411c76509e546fd94979ae8 increase figure size Shelley Fong 2021-11-18 more whitespace around figures https://staging.physiomeproject.org/workspace/6ba/@@file/91b8ce4a0f596f823e52f96f9e71a93ee1efd704 more whitespace around figures Shelley Fong 2021-11-18 more whitespace around figures https://staging.physiomeproject.org/workspace/6ba/@@file/6982114b56df787f77c7b4d7bce56390f4aeccd7 more whitespace around figures Shelley Fong 2021-11-18 fixing rst line spacing https://staging.physiomeproject.org/workspace/6ba/@@file/38d463d55136bf66b1f15471fc79cb2b5fc8c867 fixing rst line spacing Shelley Fong 2021-11-17 fixing rst line spacing https://staging.physiomeproject.org/workspace/6ba/@@file/fde6d713a682fcf5e90729d02fc10b0be9540300 fixing rst line spacing Shelley Fong 2021-11-17 fixing rst line spacing https://staging.physiomeproject.org/workspace/6ba/@@file/e756fe4787e5e48481c8a7b8286d5ef4d090d1d7 fixing rst line spacing Shelley Fong 2021-11-17 fixing rst formatting https://staging.physiomeproject.org/workspace/6ba/@@file/8853e4bdc7cfbd5660c9a4fa70314ab5b87e9db0 fixing rst formatting Shelley Fong 2021-11-17 fixing rst formatting https://staging.physiomeproject.org/workspace/6ba/@@file/ed332b415e545a84111ac7b16b25d0cc18c43dfe fixing rst formatting Shelley Fong 2021-11-17 fixing rst formatting https://staging.physiomeproject.org/workspace/6ba/@@file/87ac85c4d25ba0e0c96b743fc47b470bedd68aa9 fixing rst formatting Shelley Fong 2021-11-17 fixing rst https://staging.physiomeproject.org/workspace/6ba/@@file/ed855349c25182c772adbee49e1228912ea885d3 fixing rst Shelley Fong 2021-11-17 Adding pictures and updating rst file https://staging.physiomeproject.org/workspace/6ba/@@file/f9b631dc80ac141c1145412273cc189aeb7da47f Adding pictures and updating rst file Shelley Fong 2021-11-17 Fixing https://staging.physiomeproject.org/workspace/6ba/@@file/de4ddbbb49861208831b08beb6d545a7d281723b Fixing Shelley Fong 2021-11-17 Exposure rst file https://staging.physiomeproject.org/workspace/6ba/@@file/6fba2601af3873977fab9edfabb94fff57d52607 Exposure rst file Shelley Fong 2021-11-17 init https://staging.physiomeproject.org/workspace/6ba/@@file/ee2704ba6c5b654ea408dd6b0060906735c1d1c9 init Shelley Fong 2021-11-17 Using sympy for rational nullspace https://staging.physiomeproject.org/workspace/6ba/@@file/c32be022513dc4b620d74803a6ace6ca2d817e11 Using sympy for rational nullspace Shelley Fong 2021-11-17 Finding rational nullspace https://staging.physiomeproject.org/workspace/6ba/@@file/915ab06a088cfd92a95bafcadf0a8c0774778698 Finding rational nullspace Shelley Fong 2021-11-16 Automating more https://staging.physiomeproject.org/workspace/6ba/@@file/235a300c98807bb72592f29eb7d65f230cfbd218 Automating more Shelley Fong 2021-11-02 Renaming kinetic_parameters.py https://staging.physiomeproject.org/workspace/6ba/@@file/59a386dd0a397cf3131df2b11f50c1a34430c716 Renaming kinetic_parameters.py Shelley Fong 2021-10-28 Fixing bugs https://staging.physiomeproject.org/workspace/6ba/@@file/41ab199f7256d36b5eab20aab7b22f2fa6f3999a Fixing bugs Shelley Fong 2021-10-22 Removing MATLAB files https://staging.physiomeproject.org/workspace/6ba/@@file/e45509ac64443c657a0fd28765230a27045c4801 Removing MATLAB files Shelley Fong 2021-10-20 Adding remaining python files or modifications https://staging.physiomeproject.org/workspace/6ba/@@file/b88715bf1c5c19a602db091c251e96d146ebb376 Adding remaining python files or modifications Shelley Fong 2021-10-20 Rename folder and add new py solver file https://staging.physiomeproject.org/workspace/6ba/@@file/1f0c2c898c2f5ab384ee7b1cfbf2782f644e287c Rename folder and add new py solver file Shelley Fong 2021-10-20 Adding L and G to reaction stoichiometry with BARK. Reversing reaction of R and PKACI. Making R as the only substrate of PKACI instead of B1AR_tot https://staging.physiomeproject.org/workspace/6ba/@@file/9828ba32dd2cdb7e98b0a8688eb272e89148df20 Adding L and G to reaction stoichiometry with BARK. Reversing reaction of R and PKACI. Making R as the only substrate of PKACI instead of B1AR_tot Shelley Fong 2021-10-05 test https://staging.physiomeproject.org/workspace/6ba/@@file/000f6dcb749648a9e1b135e7fbed412ce8feb6e2 test Shelley Fong 2021-10-05 Using common PMR repo for units_and_constants https://staging.physiomeproject.org/workspace/6ba/@@file/dcd09e817a01dfe8d711c7e7889c5b45b2fc64d6 Using common PMR repo for units_and_constants Shelley Fong 2021-09-17 Fixing names and write out from matlab https://staging.physiomeproject.org/workspace/6ba/@@file/80cb85f329c819b4cf6f640c823cfc48aed7d09a Fixing names and write out from matlab Shelley Fong 2021-09-17 renaming https://staging.physiomeproject.org/workspace/6ba/@@file/c3e254c4b881f3c32e241d76a081b3b448421e13 renaming Shelley Fong 2021-09-16 Rename https://staging.physiomeproject.org/workspace/6ba/@@file/c49fb7e8eeaa4bccb831134567e636453935e4e6 Rename Shelley Fong 2021-09-16 Try again https://staging.physiomeproject.org/workspace/6ba/@@file/e11aba04601cc0263df45cd8c0f544264ba7d0da Try again Shelley Fong 2021-09-15 Readding data https://staging.physiomeproject.org/workspace/6ba/@@file/fe009052422c0d5dfb791b9bdeada1bfb19c59e3 Readding data Shelley Fong 2021-09-15 Fixing pub: out https://staging.physiomeproject.org/workspace/6ba/@@file/edc6abb3bb4425ee9f8807ac16f655b07a678f64 Fixing pub: out Shelley Fong 2021-09-07 Changing ICs https://staging.physiomeproject.org/workspace/6ba/@@file/5851ec2a52ae594d769462b4d8e086c44e67f301 Changing ICs Shelley Fong 2021-09-06 Bug fixes https://staging.physiomeproject.org/workspace/6ba/@@file/c39a56c811501dfdf686da89f98bedd99f538a3b Bug fixes Shelley Fong 2021-09-06 Fixing directionality in stoichiometric matrixc of Sig/LRGbinding module https://staging.physiomeproject.org/workspace/6ba/@@file/054ecf28ef47f90c026a8a0982035cbfce11b067 Fixing directionality in stoichiometric matrixc of Sig/LRGbinding module Shelley Fong 2021-09-02 Separating LRG module into its own file to be imported into main B1AR module https://staging.physiomeproject.org/workspace/6ba/@@file/20a1369279e10616dea5053c903b32244072b8b9 Separating LRG module into its own file to be imported into main B1AR module Shelley Fong 2021-09-01 Tidying up files https://staging.physiomeproject.org/workspace/6ba/@@file/fbe25826de0eb70060cc2c5c9aa82396c50ff205 Tidying up files Shelley Fong 2021-08-30 Fixing maths of L and LR https://staging.physiomeproject.org/workspace/6ba/@@file/466a0fdda47f284d5fe87a82aeeaf3492cd6ead4 Fixing maths of L and LR Shelley Fong 2021-08-26 Adding scheme4 (sig) submodule https://staging.physiomeproject.org/workspace/6ba/@@file/826e541b9830a1629f6a3c78be33a504fdb00b4b Adding scheme4 (sig) submodule Shelley Fong 2021-08-25 Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) https://staging.physiomeproject.org/workspace/6ba/@@file/7e3bfcdcb344c0271198e1829b3282977164526f Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) Shelley Fong 2021-08-25 using constants_BG.cellml import https://staging.physiomeproject.org/workspace/6ba/@@file/47694b8f711b353699c389455b6ef97fa61a71b8 using constants_BG.cellml import Shelley Fong 2021-07-26 Consolidating imports of units and constants https://staging.physiomeproject.org/workspace/6ba/@@file/ecf0954aca9181e18116103ad18d43a3051035e0 Consolidating imports of units and constants Shelley Fong 2021-07-26 Adding MATLAB script to call function to find kinetic parameters. One for each module. https://staging.physiomeproject.org/workspace/6ba/@@file/edb0b8416dcda0a15d7330deb506341ecb5bdfed Adding MATLAB script to call function to find kinetic parameters. One for each module. Shelley Fong 2021-07-26 Adding constraint of Gibbs free energy for R+L binding https://staging.physiomeproject.org/workspace/6ba/@@file/d4ede2c913ae89ecfd962290fc5c536c82836840 Adding constraint of Gibbs free energy for R+L binding Shelley Fong 2021-07-21 Solving for only B1AR module, without G activation https://staging.physiomeproject.org/workspace/6ba/@@file/8429ef98dcd5946a457d5ba9d1b38c521d448520 Solving for only B1AR module, without G activation Shelley Fong 2021-07-19 Making various adjustments for thermodynamic consistency which are not part of original kinetic model https://staging.physiomeproject.org/workspace/6ba/@@file/209c5d96543a21996fdc1dd0038da700a2bbdcd6 Making various adjustments for thermodynamic consistency which are not part of original kinetic model Shelley Fong 2021-07-15