Location: Generic mouse stomach scaffold @ 82a0c8a47a1d / README.rst

Mabelle Lin <mlin865@aucklanduni.ac.nz>
2021-07-21 10:20:52+12:00
Adding Y4Q4 version of mouse stomach scaffold
Permanent Source URI:

In this workspace we have the `Scaffold Maker <https://github.com/ABI-Software/scaffoldmaker>`_ workflow and configuration files needed to produce the generic mouse stomach scaffold for the `SPARC <https://commonfund.nih.gov/sparc>`_ project. 

.. image:: thumbnail.png
   :width: 50%
   :alt: Rendering of the generic mouse stomach scaffold.

An anatomically-based 3D scaffold of the mouse stomach is created to map nerve ending pathways. The stomach scaffold is generated with a configurable central path defined from the fundus apex to the duodenum. A user can annotate the fundus, body, antrum, pylorus, and duodenum along the central path and use that to define the respective regions of the stomach. The cross axes of the central path provide control of the major and minor radii of the stomach in different sections.

Please see the `SPARC Portal <https://sparc.science>`_ for more details about the SPARC project.