https://staging.physiomeproject.org/workspace/6cb en-us Bond graph model of Gs protein coupled receptor activation module, based on model in Dupont et al. 2016 (LR is the substrate. Reaction act is the activation of G protein by LR.) https://staging.physiomeproject.org/workspace/6cb/@@file/afab6426d3eeb0eb82b4eda04e980cd5a059bfec Using sympy for rational nullspace Shelley Fong 2021-11-17 https://staging.physiomeproject.org/workspace/6cb/@@file/9be2a69405124e99f4949fcb62e5aaf29855076f Finding rational nullspace Shelley Fong 2021-11-16 https://staging.physiomeproject.org/workspace/6cb/@@file/4b036b466d788fee08d93fed8c87933cbf2bf86d Fixing bugs Shelley Fong 2021-10-22 https://staging.physiomeproject.org/workspace/6cb/@@file/522f5be7e3e5f86d17bca9cfd6901b1f32c0a77a Updating equations to reflect GEF action and remove wrong phosphate bindings Shelley Fong 2021-10-22 https://staging.physiomeproject.org/workspace/6cb/@@file/da26a2e282da7cb1c001d9f00cb0de38efc776a0 Changing stoichiometry of reactions and show exchange of GDP for GTP, not phosphorylation of GDP alone when bonded to alpha-G Shelley Fong 2021-10-21 https://staging.physiomeproject.org/workspace/6cb/@@file/9df51f9eb6efac59230c6994080ce4551a655834 Removing MATLAB files Shelley Fong 2021-10-20 https://staging.physiomeproject.org/workspace/6cb/@@file/156400ed27957ba10fd60d897d6c716b118f099b Adding remaining python files or modifications Shelley Fong 2021-10-20 https://staging.physiomeproject.org/workspace/6cb/@@file/13e2b10e353cd75021210de27c926674c020cb75 Renaming folder Shelley Fong 2021-10-19 https://staging.physiomeproject.org/workspace/6cb/@@file/74b4d73d4b08a5d9ee28e4a9e805051fad37c4f9 adding mu_Pi to reaction velocities Shelley Fong 2021-10-04 https://staging.physiomeproject.org/workspace/6cb/@@file/a1d8a65db2d3a722f936fa8e65851a06464fc81d Adding phosphate group Shelley Fong 2021-10-04 https://staging.physiomeproject.org/workspace/6cb/@@file/8d347daf1cd6ac9b470863dbda0a4e461a38d021 Updating reaction equations with new stoichiometry for Act reaction Shelley Fong 2021-10-01 https://staging.physiomeproject.org/workspace/6cb/@@file/10812b238ff378774a18c7bb38c6163b81f2d01a Separate G from R in stoichiometry Shelley Fong 2021-10-01 https://staging.physiomeproject.org/workspace/6cb/@@file/ef307199e53616e395685c7de8e2373b9bd8654b Change stoichiometry to separate G from R, and to conserve R in product of ACT reaction Shelley Fong 2021-10-01 https://staging.physiomeproject.org/workspace/6cb/@@file/255e7ddc7ac990eddfd325dda65ee8351061f5db Updating closed loops in G protein metabolism Shelley Fong 2021-09-28 https://staging.physiomeproject.org/workspace/6cb/@@file/53affd8fdcb61253785301c5087b793371bb4936 Using common PMR repo for units_and_constants Shelley Fong 2021-09-17 https://staging.physiomeproject.org/workspace/6cb/@@file/3dc2940d267b5e8738852a650ae6bc29572bcb28 adding Pub: out Shelley Fong 2021-09-07 https://staging.physiomeproject.org/workspace/6cb/@@file/49f98f0dd2d4bea43ed5cdc9614e22ef2a0a42c8 Renaming 'GPCR' to 'GsProtein' as the former name is wrong Shelley Fong 2021-08-31 https://staging.physiomeproject.org/workspace/6cb/@@file/323b8195f980ce2bb1432dc0532a7a9d1245a359 Tidying up files Shelley Fong 2021-08-30 https://staging.physiomeproject.org/workspace/6cb/@@file/a49a5c3db55972ea84a81b002f53b21f4739e28e Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) Shelley Fong 2021-08-25 https://staging.physiomeproject.org/workspace/6cb/@@file/411ca84a409a6547ea7c04403233d45e96e0f152 Rename file; use constants_BG.cellml import Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6cb/@@file/5c1390117dceaede46debd5f51af280f5bf5887a Consolidating imports of units and constants Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6cb/@@file/579c3eafb150c243ed14e5abd3dde53932a1fee4 Removing unnecessary file Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6cb/@@file/388451396a719f4944f3bdbc3b121ce2855589df Adding MATLAB script to call function to find kinetic parameters. One for each module. Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6cb/@@file/9b5f31178365f22c5a7e7c2f23cfbc64e674048f Initial commit Shelley Fong 2021-07-22 https://staging.physiomeproject.org/workspace/6cb/@@file/209c5d96543a21996fdc1dd0038da700a2bbdcd6 Making various adjustments for thermodynamic consistency which are not part of original kinetic model Shelley Fong 2021-07-15 https://staging.physiomeproject.org/workspace/6cb/@@file/810eac117f2e040ef6f0932bcbc09346888139ac Adding scheme for making LRG from L,R,G Shelley Fong 2021-07-08 https://staging.physiomeproject.org/workspace/6cb/@@file/3a1148e2a1e6d81f3921764f22b31f3a669ac390 Comparing BG version against kinetic Saucerman03 model Shelley Fong 2021-07-07 https://staging.physiomeproject.org/workspace/6cb/@@file/7007271f759c14360b3ece7c36f74605289f606e Initial commit Shelley Fong 2021-07-05